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Hay E, Hill S, Schürmann F, Markram H, Segev I. (2011). Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS computational biology. 7 [PubMed]

See more from authors: Hay E · Hill S · Schürmann F · Markram H · Segev I

References and models cited by this paper

Adams PR, Brown DA, Constanti A. (1982). M-currents and other potassium currents in bullfrog sympathetic neurones. The Journal of physiology. 330 [PubMed]

Amitai Y, Friedman A, Connors BW, Gutnick MJ. (1993). Regenerative activity in apical dendrites of pyramidal cells in neocortex. Cerebral cortex (New York, N.Y. : 1991). 3 [PubMed]

Archie KA, Mel BW. (2000). A model for intradendritic computation of binocular disparity. Nature neuroscience. 3 [PubMed]

Avery RB, Johnston D. (1996). Multiple channel types contribute to the low-voltage-activated calcium current in hippocampal CA3 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 16 [PubMed]

Bar Ilan L, Gidon A, Segev I. (2011). Interregional synaptic competition in neurons with multiple STDP-inducing signals. Journal of neurophysiology. 105 [PubMed]

Berger T, Senn W, Lüscher HR. (2003). Hyperpolarization-activated current Ih disconnects somatic and dendritic spike initiation zones in layer V pyramidal neurons. Journal of neurophysiology. 90 [PubMed]

Beume N, Naujoks B, Emmerich M. (2007). SMS-EMOA: Multiobjective selection based on dominated hypervolume. Eur J Oper Res. 181

Brecht M, Schneider M, Sakmann B, Margrie TW. (2004). Whisker movements evoked by stimulation of single pyramidal cells in rat motor cortex. Nature. 427 [PubMed]

Colbert CM, Pan E. (2002). Ion channel properties underlying axonal action potential initiation in pyramidal neurons. Nature neuroscience. 5 [PubMed]

Deb K. (2001). Multi-objective optimization using evolutionary algorithms. xix

Deb K, Pratap A, Agarwal S, Meyarivan T. (2002). A fast and elitist multiobjective genetic algorithm: NSGA-II Nsga-ii Ieee Transactions On Evolutionary Computation. 6

Destexhe A, Mainen ZF, Sejnowski TJ. (1994). Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. Journal of computational neuroscience. 1 [PubMed]

Druckmann S et al. (2007). A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data. Frontiers in neuroscience. 1 [PubMed]

Fleidervish IA, Lasser-Ross N, Gutnick MJ, Ross WN. (2010). Na+ imaging reveals little difference in action potential-evoked Na+ influx between axon and soma. Nature neuroscience. 13 [PubMed]

Gentet LJ, Avermann M, Matyas F, Staiger JF, Petersen CC. (2010). Membrane potential dynamics of GABAergic neurons in the barrel cortex of behaving mice. Neuron. 65 [PubMed]

Goaillard JM, Taylor AL, Schulz DJ, Marder E. (2009). Functional consequences of animal-to-animal variation in circuit parameters. Nature neuroscience. 12 [PubMed]

Goldstein SS, Rall W. (1974). Changes of action potential shape and velocity for changing core conductor geometry. Biophysical journal. 14 [PubMed]

Hattox AM, Nelson SB. (2007). Layer V neurons in mouse cortex projecting to different targets have distinct physiological properties. Journal of neurophysiology. 98 [PubMed]

Hille B. (1996). A K+ channel worthy of attention. Science (New York, N.Y.). 273 [PubMed]

Hines ML, Carnevale NT. (2006). The NEURON Book.

Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM. (2004). ModelDB: A Database to Support Computational Neuroscience. Journal of computational neuroscience. 17 [PubMed]

Holmes WR, Rall W. (1992). Estimating the electrotonic structure of neurons with compartmental models. Journal of neurophysiology. 68 [PubMed]

Houweling AR, Brecht M. (2008). Behavioural report of single neuron stimulation in somatosensory cortex. Nature. 451 [PubMed]

Hu W et al. (2009). Distinct contributions of Na(v)1.6 and Na(v)1.2 in action potential initiation and backpropagation. Nature neuroscience. 12 [PubMed]

Keren N, Bar-Yehuda D, Korngreen A. (2009). Experimentally guided modelling of dendritic excitability in rat neocortical pyramidal neurones. The Journal of physiology. 587 [PubMed]

Keren N, Peled N, Korngreen A. (2005). Constraining compartmental models using multiple voltage recordings and genetic algorithms. Journal of neurophysiology. 94 [PubMed]

Kim HG, Connors BW. (1993). Apical dendrites of the neocortex: correlation between sodium- and calcium-dependent spiking and pyramidal cell morphology. The Journal of neuroscience : the official journal of the Society for Neuroscience. 13 [PubMed]

Koch C, Segev I. (2000). The role of single neurons in information processing. Nature neuroscience. 3 Suppl [PubMed]

Kole MH, Hallermann S, Stuart GJ. (2006). Single Ih channels in pyramidal neuron dendrites: properties, distribution, and impact on action potential output. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

Kole MH et al. (2008). Action potential generation requires a high sodium channel density in the axon initial segment. Nature neuroscience. 11 [PubMed]

Korngreen A, Sakmann B. (2000). Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients. The Journal of physiology. 525 Pt 3 [PubMed]

Larkman AU. (1991). Dendritic morphology of pyramidal neurones of the visual cortex of the rat: III. Spine distributions. The Journal of comparative neurology. 306 [PubMed]

Larkum ME, Kaiser KM, Sakmann B. (1999). Calcium electrogenesis in distal apical dendrites of layer 5 pyramidal cells at a critical frequency of back-propagating action potentials. Proceedings of the National Academy of Sciences of the United States of America. 96 [PubMed]

Larkum ME, Nevian T, Sandler M, Polsky A, Schiller J. (2009). Synaptic integration in tuft dendrites of layer 5 pyramidal neurons: a new unifying principle. Science (New York, N.Y.). 325 [PubMed]

Larkum ME, Senn W, Lüscher HR. (2004). Top-down dendritic input increases the gain of layer 5 pyramidal neurons. Cerebral cortex (New York, N.Y. : 1991). 14 [PubMed]

Larkum ME, Zhu JJ. (2002). Signaling of layer 1 and whisker-evoked Ca2+ and Na+ action potentials in distal and terminal dendrites of rat neocortical pyramidal neurons in vitro and in vivo. The Journal of neuroscience : the official journal of the Society for Neuroscience. 22 [PubMed]

Larkum ME, Zhu JJ, Sakmann B. (1999). A new cellular mechanism for coupling inputs arriving at different cortical layers. Nature. 398 [PubMed]

Larkum ME, Zhu JJ, Sakmann B. (2001). Dendritic mechanisms underlying the coupling of the dendritic with the axonal action potential initiation zone of adult rat layer 5 pyramidal neurons. The Journal of physiology. 533 [PubMed]

Le Bé JV, Silberberg G, Wang Y, Markram H. (2007). Morphological, electrophysiological, and synaptic properties of corticocallosal pyramidal cells in the neonatal rat neocortex. Cerebral cortex (New York, N.Y. : 1991). 17 [PubMed]

Magee JC, Cook EP. (2000). Somatic EPSP amplitude is independent of synapse location in hippocampal pyramidal neurons. Nature neuroscience. 3 [PubMed]

Magistretti J, Alonso A. (1999). Biophysical properties and slow voltage-dependent inactivation of a sustained sodium current in entorhinal cortex layer-II principal neurons: a whole-cell and single-channel study. The Journal of general physiology. 114 [PubMed]

Mainen ZF, Sejnowski TJ. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 382 [PubMed]

Markram H. (2006). The blue brain project. Nature reviews. Neuroscience. 7 [PubMed]

Markram H, Lübke J, Frotscher M, Roth A, Sakmann B. (1997). Physiology and anatomy of synaptic connections between thick tufted pyramidal neurones in the developing rat neocortex. The Journal of physiology. 500 ( Pt 2) [PubMed]

Markram H, Lübke J, Frotscher M, Sakmann B. (1997). Regulation of synaptic efficacy by coincidence of postsynaptic APs and EPSPs. Science (New York, N.Y.). 275 [PubMed]

Mel BW, Ruderman DL, Archie KA. (1998). Translation-invariant orientation tuning in visual "complex" cells could derive from intradendritic computations. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Menon V, Spruston N, Kath WL. (2009). A state-mutating genetic algorithm to design ion-channel models. Proceedings of the National Academy of Sciences of the United States of America. 106 [PubMed]

Meyer HS et al. (2010). Cell type-specific thalamic innervation in a column of rat vibrissal cortex. Cerebral cortex (New York, N.Y. : 1991). 20 [PubMed]

Murayama M, Larkum ME. (2009). Enhanced dendritic activity in awake rats. Proceedings of the National Academy of Sciences of the United States of America. 106 [PubMed]

Murayama M et al. (2009). Dendritic encoding of sensory stimuli controlled by deep cortical interneurons. Nature. 457 [PubMed]

Nevian T, Larkum ME, Polsky A, Schiller J. (2007). Properties of basal dendrites of layer 5 pyramidal neurons: a direct patch-clamp recording study. Nature neuroscience. 10 [PubMed]

Okun M, Lampl I. (2008). Instantaneous correlation of excitation and inhibition during ongoing and sensory-evoked activities. Nature neuroscience. 11 [PubMed]

Palmer LM, Stuart GJ. (2006). Site of action potential initiation in layer 5 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

Poirazi P, Brannon T, Mel BW. (2003). Arithmetic of subthreshold synaptic summation in a model CA1 pyramidal cell. Neuron. 37 [PubMed]

Polsky A, Mel B, Schiller J. (2009). Encoding and decoding bursts by NMDA spikes in basal dendrites of layer 5 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

Polsky A, Mel BW, Schiller J. (2004). Computational subunits in thin dendrites of pyramidal cells. Nature neuroscience. 7 [PubMed]

RALL W. (1959). Branching dendritic trees and motoneuron membrane resistivity. Experimental neurology. 1 [PubMed]

Randall AD, Tsien RW. (1997). Contrasting biophysical and pharmacological properties of T-type and R-type calcium channels. Neuropharmacology. 36 [PubMed]

Rapp M, Yarom Y, Segev I. (1996). Modeling back propagating action potential in weakly excitable dendrites of neocortical pyramidal cells. Proceedings of the National Academy of Sciences of the United States of America. 93 [PubMed]

Remme MW, Lengyel M, Gutkin BS. (2009). The role of ongoing dendritic oscillations in single-neuron dynamics. PLoS computational biology. 5 [PubMed]

Remy S, Csicsvari J, Beck H. (2009). Activity-dependent control of neuronal output by local and global dendritic spike attenuation. Neuron. 61 [PubMed]

Rettig J et al. (1992). Characterization of a Shaw-related potassium channel family in rat brain. The EMBO journal. 11 [PubMed]

Reuveni I, Friedman A, Amitai Y, Gutnick MJ. (1993). Stepwise repolarization from Ca2+ plateaus in neocortical pyramidal cells: evidence for nonhomogeneous distribution of HVA Ca2+ channels in dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 13 [PubMed]

Schaefer AT, Larkum ME, Sakmann B, Roth A. (2003). Coincidence detection in pyramidal neurons is tuned by their dendritic branching pattern. Journal of neurophysiology. 89 [PubMed]

Schiller J, Major G, Koester HJ, Schiller Y. (2000). NMDA spikes in basal dendrites of cortical pyramidal neurons. Nature. 404 [PubMed]

Schiller J, Schiller Y, Stuart G, Sakmann B. (1997). Calcium action potentials restricted to distal apical dendrites of rat neocortical pyramidal neurons. The Journal of physiology. 505 ( Pt 3) [PubMed]

Shen GY, Chen WR, Midtgaard J, Shepherd GM, Hines ML. (1999). Computational analysis of action potential initiation in mitral cell soma and dendrites based on dual patch recordings. Journal of neurophysiology. 82 [PubMed]

Stuart G, Schiller J, Sakmann B. (1997). Action potential initiation and propagation in rat neocortical pyramidal neurons. The Journal of physiology. 505 ( Pt 3) [PubMed]

Stuart G, Spruston N. (1998). Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Stuart GJ, Häusser M. (2001). Dendritic coincidence detection of EPSPs and action potentials. Nature neuroscience. 4 [PubMed]

Stuart GJ, Sakmann B. (1994). Active propagation of somatic action potentials into neocortical pyramidal cell dendrites. Nature. 367 [PubMed]

Toledo-Rodriguez M et al. (2004). Correlation maps allow neuronal electrical properties to be predicted from single-cell gene expression profiles in rat neocortex. Cerebral cortex (New York, N.Y. : 1991). 14 [PubMed]

Tsay D, Dudman JT, Siegelbaum SA. (2007). HCN1 channels constrain synaptically evoked Ca2+ spikes in distal dendrites of CA1 pyramidal neurons. Neuron. 56 [PubMed]

Van Geit W, De Schutter E, Achard P. (2008). Automated neuron model optimization techniques: a review. Biological cybernetics. 99 [PubMed]

Vanier MC, Bower JM. (1999). A comparative survey of automated parameter-search methods for compartmental neural models. Journal of computational neuroscience. 7 [PubMed]

Vetter P, Roth A, Häusser M. (2001). Propagation of action potentials in dendrites depends on dendritic morphology. Journal of neurophysiology. 85 [PubMed]

Williams SR, Stuart GJ. (2000). Site independence of EPSP time course is mediated by dendritic I(h) in neocortical pyramidal neurons. Journal of neurophysiology. 83 [PubMed]

Zhu JJ. (2000). Maturation of layer 5 neocortical pyramidal neurons: amplifying salient layer 1 and layer 4 inputs by Ca2+ action potentials in adult rat tuft dendrites. The Journal of physiology. 526 Pt 3 [PubMed]

Zitzler E, Kunzli S. (2004). Indicator-based selection in multiobjective search Parallel Problem Solving From Nature-ppsn Viii. 3242

References and models that cite this paper

Almog M, Korngreen A. (2014). A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

Anwar H et al. (2014). Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models. Frontiers in cellular neuroscience. 8 [PubMed]

Bahl A, Stemmler MB, Herz AV, Roth A. (2012). Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. Journal of neuroscience methods. 210 [PubMed]

Balbi P, Martinoia S, Massobrio P. (2015). Axon-somatic back-propagation in detailed models of spinal alpha motoneurons. Frontiers in computational neuroscience. 9 [PubMed]

Barlow BSM, Longtin A, Joós B. (2024). Impact on backpropagation of the spatial heterogeneity of sodium channel kinetics in the axon initial segment. PLoS computational biology. 20 [PubMed]

Ben-Shalom R et al. (2022). NeuroGPU: Accelerating multi-compartment, biophysically detailed neuron simulations on GPUs Journal of neuroscience methods. 366 [PubMed]

Bird AD, Cuntz H. (2016). Optimal Current Transfer in Dendrites. PLoS computational biology. 12 [PubMed]

Cohen MX. (2014). Fluctuations in oscillation frequency control spike timing and coordinate neural networks. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

Doron M, Chindemi G, Muller E, Markram H, Segev I. (2017). Timed Synaptic Inhibition Shapes NMDA Spikes, Influencing Local Dendritic Processing and Global I/O Properties of Cortical Neurons. Cell reports. 21 [PubMed]

Ebner C, Clopath C, Jedlicka P, Cuntz H. (2019). Unifying Long-Term Plasticity Rules for Excitatory Synapses by Modeling Dendrites of Cortical Pyramidal Neurons. Cell reports. 29 [PubMed]

Egger R et al. (2020). Cortical Output Is Gated by Horizontally Projecting Neurons in the Deep Layers Neuron. 105

Einevoll GT, Ness TV, Miceli S. (2017). Impedance Spectrum in Cortical Tissue: Implications for Propagation of LFP Signals on the Microscopic Level Eneuro. 4

Eyal G et al. (2018). Human Cortical Pyramidal Neurons: From Spines to Spikes via Models. Frontiers in cellular neuroscience. 12 [PubMed]

Eyal G et al. (2016). Unique membrane properties and enhanced signal processing in human neocortical neurons. eLife. 5 [PubMed]

Friedrich P, Vella M, Gulyás AI, Freund TF, Káli S. (2014). A flexible, interactive software tool for fitting the parameters of neuronal models. Frontiers in neuroinformatics. 8 [PubMed]

Galloni AR, Laffere A, Rancz E. (2020). Apical length governs computational diversity of layer 5 pyramidal neurons. eLife. 9 [PubMed]

Gidon A, Segev I. (2012). Principles governing the operation of synaptic inhibition in dendrites. Neuron. 75 [PubMed]

Grossman N et al. (2013). The spatial pattern of light determines the kinetics and modulates backpropagation of optogenetic action potentials. Journal of computational neuroscience. 34 [PubMed]

Guet-McCreight A, Camiré O, Topolnik L, Skinner FK. (2016). Using a Semi-Automated Strategy to Develop Multi-Compartment Models That Predict Biophysical Properties of Interneuron-Specific 3 (IS3) Cells in Hippocampus. eNeuro. 3 [PubMed]

Halnes G et al. (2016). Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue. PLoS computational biology. 12 [PubMed]

Hass J, Hertäg L, Durstewitz D. (2016). A Detailed Data-Driven Network Model of Prefrontal Cortex Reproduces Key Features of In Vivo Activity. PLoS computational biology. 12 [PubMed]

Hay E, Pruszynski JA. (2020). Orientation processing by synaptic integration across first-order tactile neurons. PLoS computational biology. 16 [PubMed]

Hay E, Schürmann F, Markram H, Segev I. (2013). Preserving axosomatic spiking features despite diverse dendritic morphology. Journal of neurophysiology. 109 [PubMed]

Hay E, Segev I. (2015). Dendritic Excitability and Gain Control in Recurrent Cortical Microcircuits. Cerebral cortex (New York, N.Y. : 1991). 25 [PubMed]

Jȩdrzejewski-Szmek Z, Abrahao KP, Jȩdrzejewska-Szmek J, Lovinger DM, Blackwell KT. (2018). Parameter Optimization Using Covariance Matrix Adaptation-Evolutionary Strategy (CMA-ES), an Approach to Investigate Differences in Channel Properties Between Neuron Subtypes. Frontiers in neuroinformatics. 12 [PubMed]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

Mäki-Marttunen T et al. (2019). Computational modeling of genetic contributions to excitability and neural coding in layer V pyramidal cells: applications to schizophrenia pathology Front. Comput. Neurosci.. 13

Mäki-Marttunen T et al. (2018). A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. Journal of neuroscience methods. 293 [PubMed]

Mäki-Marttunen T et al. (2016). Functional Effects of Schizophrenia-Linked Genetic Variants on Intrinsic Single-Neuron Excitability: A Modeling Study. Biological psychiatry. Cognitive neuroscience and neuroimaging. 1 [PubMed]

Mäki-Marttunen T et al. (2019). Alterations in Schizophrenia-Associated Genes Can Lead to Increased Power in Delta Oscillations. Cerebral cortex (New York, N.Y. : 1991). 29 [PubMed]

Mäki-Marttunen T et al. (2017). Pleiotropic effects of schizophrenia-associated genetic variants in neuron firing and cardiac pacemaking revealed by computational modeling. Translational psychiatry. 7 [PubMed]

Mäki-Marttunen T, Mäki-Marttunen V. (2022). Excitatory and inhibitory effects of HCN channel modulation on excitability of layer V pyramidal cells PLoS computational biology. 18 [PubMed]

Ness TV, Remme MW, Einevoll GT. (2016). Active subthreshold dendritic conductances shape the local field potential. The Journal of physiology. 594 [PubMed]

Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW. (2016). Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Frontiers in pharmacology. 7 [PubMed]

Neymotin SA et al. (2016). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neuroscience. 316 [PubMed]

Neymotin SA et al. (2017). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. Journal of neurophysiology. 117 [PubMed]

Podlaski WF et al. (2017). Mapping the function of neuronal ion channels in model and experiment. eLife. 6 [PubMed]

Rich S, Moradi Chameh H, Sekulic V, Valiante TA, Skinner FK. (2021). Modeling Reveals Human-Rodent Differences in H-Current Kinetics Influencing Resonance in Cortical Layer 5 Neurons. Cerebral cortex (New York, N.Y. : 1991). 31 [PubMed]

Rumbell T, Kozloski J. (2019). Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons PLOS Computational Biology. 15

Rumbell TH et al. (2016). Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons. Journal of computational neuroscience. 41 [PubMed]

Schwarzacher SW, Cuntz H, Jedlicka P, Beining M, Mongiat LA. (2017). T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells eLife.

Shai AS, Anastassiou CA, Larkum ME, Koch C. (2015). Physiology of layer 5 pyramidal neurons in mouse primary visual cortex: coincidence detection through bursting. PLoS computational biology. 11 [PubMed]

Solbrå A et al. (2018). A Kirchhoff-Nernst-Planck framework for modeling large scale extracellular electrodiffusion surrounding morphologically detailed neurons. PLoS computational biology. 14 [PubMed]

Spratt PWE et al. (2021). Paradoxical hyperexcitability from NaV1.2 sodium channel loss in neocortical pyramidal cells Cell reports. 36 [PubMed]

Wilmes KA, Sprekeler H, Schreiber S. (2016). Inhibition as a Binary Switch for Excitatory Plasticity in Pyramidal Neurons. PLoS computational biology. 12 [PubMed]

Zang Y, Marder E. (2023). Neuronal morphology enhances robustness to perturbations of channel densities Proceedings of the National Academy of Sciences of the United States of America. 120 [PubMed]

Zylbertal A, Yarom Y, Wagner S. (2017). The Slow Dynamics of Intracellular Sodium Concentration Increase the Time Window of Neuronal Integration: A Simulation Study Frontiers in computational neuroscience. 11 [PubMed]

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