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Suzanna Lewis
Suzanna E. Lewis
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- affiliation: Lawrence Berkeley National Laboratory, CA, USA
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2020 – today
- 2021
- [j32]Rebecca C. Jackson
, Nicolas Matentzoglu
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021) - 2020
- [j31]Kent A. Shefchek
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 48(Database-Issue): D704-D715 (2020)
2010 – 2019
- 2019
- [j30]Nathan A. Dunn
Apollo: Democratizing genome annotation. PLoS Comput. Biol. 15(2) (2019) - 2018
- [j29]Kristoffer Forslund
Gearing up to handle the mosaic nature of life in the quest for orthologs. Bioinform. 34(2): 323-329 (2018) - 2017
- [j28]Christopher J. Mungall, Julie A. McMurry
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 45(Database-Issue): D712-D722 (2017) - [i3]Philippa C. Griffin, Jyoti Khadake, Kate S. LeMay, Suzanna E. Lewis, Sandra E. Orchard
Best practice data life cycle approaches for the life sciences. F1000Research 6: 1618- (2017) - 2016
- [j27]Marc Feuermann, Pascale Gaudet
Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes. Database J. Biol. Databases Curation 2016 (2016) - [j26]Guy Yachdav, Sebastian Wilzbach, Benedikt Rauscher, Robert Sheridan, Ian Sillitoe, James B. Procter
MSAViewer: interactive JavaScript visualization of multiple sequence alignments. Bioinform. 32(22): 3501-3503 (2016) - [j25]Pier Luigi Buttigieg
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. J. Biomed. Semant. 7: 57 (2016) - 2015
- [j24]Frederic B. Bastian
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations. Database J. Biol. Databases Curation 2015 (2015) - 2014
- [j23]Marcus C. Chibucos
Standardized description of scientific evidence using the Evidence Ontology (ECO). Database J. Biol. Databases Curation 2014 (2014) - [j22]Melissa A. Haendel
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. J. Biomed. Semant. 5: 21 (2014) - [j21]Anika Oellrich, Sebastian Köhler
The influence of disease categories on gene candidate predictions from model organism phenotypes. J. Biomed. Semant. 5(S-1): S4 (2014) - [j20]Sebastian Köhler
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res. 42(Database-Issue): 966-974 (2014) - [i2]Manuel Corpas
BioJS: an open source standard for biological visualisation - its status in 2014. F1000Research 3: 55 (2014) - 2013
- [j19]Damian Smedley, Anika Oellrich, Sebastian Köhler
PhenoDigm: analyzing curated annotations to associate animal models with human diseases. Database J. Biol. Databases Curation 2013 (2013) - [j18]Pier Luigi Buttigieg
The environment ontology: contextualising biological and biomedical entities. J. Biomed. Semant. 4: 43 (2013) - [j17]Sarah Maynard, Christopher J. Mungall
A knowledge based approach to matching human neurodegenerative disease and animal models. Frontiers Neuroinformatics 7: 7 (2013) - 2012
- [j16]Sergio Contrino
modMine: flexible access to modENCODE data. Nucleic Acids Res. 40(Database-Issue): 1082-1088 (2012) - [j15]Paul D. Thomas
On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report. PLoS Comput. Biol. 8(2) (2012) - 2011
- [j14]Pascale Gaudet, Michael S. Livstone
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings Bioinform. 12(5): 449-462 (2011) - [j13]Pascale Gaudet, Amos Bairoch
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011) - [j12]Nicole L. Washington
The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details. Database J. Biol. Databases Curation 2011 (2011) - [j11]Pascale Gaudet, Amos Bairoch
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39(Database-Issue): 7-10 (2011) - 2010
- [j10]Huaiyu Mi, Qing Dong, Anushya Muruganujan, Pascale Gaudet
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. Nucleic Acids Res. 38(Database-Issue): 204-210 (2010)
2000 – 2009
- 2009
- [j9]Seth Carbon, Amelia Ireland, Christopher J. Mungall
AmiGO: online access to ontology and annotation data. Bioinform. 25(2): 288-289 (2009) - [j8]Ed Lee, Nomi L. Harris
Apollo: a community resource for genome annotation editing. Bioinform. 25(14): 1836-1837 (2009) - [j7]Daniel Schober
Survey-based naming conventions for use in OBO Foundry ontology development. BMC Bioinform. 10 (2009) - [j6]Lisa Matthews
Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res. 37(Database-Issue): 619-622 (2009) - 2008
- [i1]Nicole L. Washington, M. Gibson, Chris Mungall, Michael Ashburner, Georgios V. Gkoutos, Monte Westerfield, Melissa A. Haendel, Suzanna E. Lewis:
NLP and Phenotypes: using Ontologies to link Human Diseases to Animal Models. Ontologies and Text Mining for Life Sciences 2008 - 2007
- [j5]John Day-Richter, Midori A. Harris
OBO-Edit - an ontology editor for biologists. Bioinform. 23(16): 2198-2200 (2007) - [j4]Bernard de Bono, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Gopal Gopinath, David Croft, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein:
Reactome: An integrated expert model of human molecular processes and access toolkit. J. Integr. Bioinform. 4(3) (2007) - 2006
- [j3]Mark Yandell, Chris Mungall
Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes. PLoS Comput. Biol. 2(3) (2006) - [c3]Esther Schmidt, Ewan Birney, David Croft, Bernard de Bono, Peter D'Eustachio, Marc Gillespie
Reactome - A Knowledgebase of Biological Pathways. OTM Workshops (1) 2006: 710-719 - 2005
- [j2]G. Joshi-Tope, Marc Gillespie, Imre Vastrik
Reactome: a knowledgebase of biological pathways. Nucleic Acids Res. 33(Database-Issue): 428-432 (2005) - 2004
- [j1]Michael Bada, Robert Stevens, Carole A. Goble
A short study on the success of the Gene Ontology. J. Web Semant. 1(2): 235-240 (2004) - 2000
- [c2]Robin McEntire, Peter D. Karp, Neil F. Abernethy, David Benton, Gregg Helt, Matt DeJongh, Robert Kent, Anthony Kosky, Suzanna Lewis, Dan Hodnett, Eric P. Neumann, Frank Olken, Dhiraj K. Pathak, Peter Tarczy-Hornoch, Luca Toldo, Thodoros Topaloglou:
An Evaluation of Ontology Exchange Languages for Bioinformatics. ISMB 2000: 239-250
1990 – 1999
- 1992
- [c1]Victor M. Markowitz, Suzanna Lewis, John L. McCarthy, Frank Olken, Manfred Zorn:
Data Management for Genomic Mapping Applications: A Case Study. SSDBM 1992: 45-57
Coauthor Index
Chris Mungall
aka: Christopher J. Mungall
aka: Christopher J. Mungall
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