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Toni Gabaldón
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2020 – today
- 2023
- [i1]Robert M. Waterhouse
, Anne-Françoise Adam-Blondon, Bachir Balech
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. F1000Research 12: 499 (2023) - 2022
- [j30]Leandro A Bugnon, Alejandro A. Edera, Santiago Prochetto
Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches. Briefings Bioinform. 23(4) (2022) - [j29]Diego Fuentes
PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies. Nucleic Acids Res. 50(D1): 1062-1068 (2022) - [j28]Yannis Nevers, Tamsin E. M. Jones
The Quest for Orthologs orthology benchmark service in 2022. Nucleic Acids Res. 50(W1): 623-632 (2022) - 2021
- [j27]Ahmed Ibrahem Hafez
SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files. Bioinform. 37(11): 1610-1612 (2021) - 2020
- [j26]Hrant Hovhannisyan
CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies. Bioinform. 36(3): 925-927 (2020) - [j25]Marina Marcet-Houben
EvolClust: automated inference of evolutionary conserved gene clusters in eukaryotes. Bioinform. 36(4): 1265-1266 (2020) - [j24]Cinta Pegueroles
HaploTypo: a variant-calling pipeline for phased genomes. Bioinform. 36(8): 2569-2571 (2020) - [j23]Uciel Chorostecki
MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life. Nucleic Acids Res. 48(Webserver-Issue): W553-W557 (2020)
2010 – 2019
- 2018
- [j22]Kristoffer Forslund
Gearing up to handle the mosaic nature of life in the quest for orthologs. Bioinform. 34(2): 323-329 (2018) - 2016
- [j21]Patrice Baa-Puyoulet, Nicolas Parisot
ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. Database J. Biol. Databases Curation 2016 (2016) - [j20]Pedro Furió-Tarí, Sonia Tarazona, Toni Gabaldón, Anton J. Enright
spongeScan: A web for detecting microRNA binding elements in lncRNA sequences. Nucleic Acids Res. 44(Webserver-Issue): W176-W180 (2016) - 2014
- [j19]Erik L. L. Sonnhammer
Big data and other challenges in the quest for orthologs. Bioinform. 30(21): 2993-2998 (2014) - [j18]Sean Powell
eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Res. 42(Database-Issue): 231-239 (2014) - [j17]Jaime Huerta-Cepas
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome. Nucleic Acids Res. 42(Database-Issue): 897-902 (2014) - [j16]Juliane C. Dohm
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) Open. Nat. 505(7484): 546-549 (2014) - 2013
- [j15]Salvador Capella-Gutiérrez
Measuring guide-tree dependency of inferred gaps in progressive aligners. Bioinform. 29(8): 1011-1017 (2013) - 2012
- [j14]Christophe Dessimoz
Toward community standards in the quest for orthologs. Bioinform. 28(6): 900-904 (2012) - 2011
- [j13]Jaime Huerta-Cepas
Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication. Briefings Bioinform. 12(5): 442-448 (2011) - [j12]Augusto F. Vellozo, Amélie S. Véron, Patrice Baa-Puyoulet, Jaime Huerta-Cepas
CycADS: an annotation database system to ease the development and update of BioCyc databases. Database J. Biol. Databases Curation 2011 (2011) - [j11]Jaime Huerta-Cepas
Assigning duplication events to relative temporal scales in genome-wide studies. Bioinform. 27(1): 38-45 (2011) - [j10]Jaime Huerta-Cepas
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions. Nucleic Acids Res. 39(Database-Issue): 556-560 (2011) - [j9]Rubén Sánchez
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Res. 39(Web-Server-Issue): 470-474 (2011) - 2010
- [j8]Jaime Huerta-Cepas
ETE: a python Environment for Tree Exploration. BMC Bioinform. 11: 24 (2010) - [j7]Thomas Lingner, Stefanie Mühlhausen
Predicting phenotypic traits of prokaryotes from protein domain frequencies. BMC Bioinform. 11: 481 (2010) - [j6]Agatha Schlüter
PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome. Nucleic Acids Res. 38(Database-Issue): 800-805 (2010)
2000 – 2009
- 2009
- [j5]Salvador Capella-Gutiérrez
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinform. 25(15): 1972-1973 (2009) - [c2]Mateus Patricio, Jaime Huerta-Cepas, Toni Gabaldón, Rafael Zardoya
Automatic Prediction of the Genetic Code. IWANN (2) 2009: 1125-1129 - 2008
- [j4]Jaime Huerta-Cepas
PhylomeDB: a database for genome-wide collections of gene phylogenies. Nucleic Acids Res. 36(Database-Issue): 491-496 (2008) - 2007
- [j3]Agatha Schlüter
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. Nucleic Acids Res. 35(Database-Issue): 815-822 (2007) - [j2]Joaquín Tárraga, Ignacio Medina
Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Res. 35(Web-Server-Issue): 38-42 (2007) - [j1]Toni Gabaldón
From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial Protein Synthesis and Metabolism. PLoS Comput. Biol. 3(11) (2007) - 2005
- [c1]Toni Gabaldón
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes. ECCB/JBI 2005: 150
Coauthor Index
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