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14th eScience 2018: Amsterdam, Netherlands
- 14th IEEE International Conference on e-Science, e-Science 2018, Amsterdam, The Netherlands, October 29 - November 1, 2018. IEEE Computer Society 2018, ISBN 978-1-5386-9156-4
International Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE 6.1, 2018)
Talks I
- Maria J. Cruz, Shalini Kurapati, Yasemin Turkyilmaz-van der Velden
:
The Role of Data Stewardship in Software Sustainability and Reproducibility. 1-8 - Reed Milewicz, Elaine M. Raybourn:
Talk to Me: A Case Study on Coordinating Expertise in Large-Scale Scientific Software Projects. 9-18 - Mateusz Kuzak, Jen Harrow, Rafael C. Jiménez, Paula Andrea Martínez
Lesson Development for Open Source Software Best Practices Adoption. 19-20
Talks II
- Catherine Jones
Reflections from a Decade of Running CCPForge. 21-22 - Jurriaan H. Spaaks, Tom Klaver, Stefan Verhoeven, Jason Maassen
Painting the Picture of Software Impact with the Research Software Directory. 23-24
Talks III
- Stephan Druskat
Mapping the Research Software Sustainability Space. 25-30 - Jeremy Cohen
Building a Sustainable Structure for Research Software Engineering Activities. 31-32 - Alexander Struck
Research Software Discovery: An Overview. 33-37 - Ben van Werkhoven, Tom Bakker, Olivier Philippe
Survey on Research Software Engineering in the Netherlands. 38-39
Workshop on Research Objects (RO2018)
- Stian Soiland-Reyes
The Archive and Package (arcp) URI Scheme. 40-44 - Bryce D. Mecum, Matthew B. Jones, David Vieglais, Craig Willis
Preserving Reproducibility: Provenance and Executable Containers in DataONE Data Packages. 45-49 - Raúl Palma, Andrés García-Silva, José Manuél Gómez-Pérez, Marcin Krystek:
A Research Object-Based Toolkit to Support the Earth Science Research Lifecycle. 50-57
Plenary Session
- Daan de Leeuw, Mike Bryant
Digital Methods in Holocaust Studies: The European Holocaust Research Infrastructure. 58-66 - Paul Roe, Meriem Ferroudj, Michael Towsey, Lin Schwarzkopf:
Catching Toad Calls in the Cloud: Commodity Edge Computing for Flexible Analysis of Big Sound Data. 67-74 - Daniyal Kazempour, Anna Beer
FATBIRD: A Tool for Flight and Trajectories Analyses of Birds. 75-82 - Tobias Kuhn
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. 83-92 - Gonzalo P. Rodrigo, Matthew L. Henderson, Gunther H. Weber
ScienceSearch: Enabling Search through Automatic Metadata Generation. 93-104 - Lasse Wollatz
Curation of Image Data for Medical Research. 105-113 - Tobias Weber
How FAIR Can you Get? Image Retrieval as a Use Case to Calculate FAIR Metrics. 114-124 - Nicky Nicolson, Alan Paton, Sarah Phillips, Allan Tucker:
Specimens as Research Objects: Reconciliation Across Distributed Repositories to Enable Metadata Propagation. 125-135 - Alexandar P. Mechev
Fast and Reproducible LOFAR Workflows with AGLOW. 136-144 - Jose Luis Fuertes Castro, Luis Fernando Gonzalez Alvaran, Loic Antonio Martinez Normand:
Visual Programming Languages for Programmers with Dyslexia: An Experiment. 145-155 - Nicholas L. Hazekamp, Douglas Thain
An Algebra for Robust Workflow Transformations. 156-167 - Adrien Coulier, Andreas Hellander:
Orchestral: A Lightweight Framework for Parallel Simulations of Cell-Cell Communication. 168-176 - Georgios Chantzialexiou, André Luckow
Pilot-Streaming: A Stream Processing Framework for High-Performance Computing. 177-188 - Jumana Dakka, Kristof Farkas-Pall, Matteo Turilli
Concurrent and Adaptive Extreme Scale Binding Free Energy Calculations. 189-200 - David P. Randall, Drew Paine
Educational Outreach & Stakeholder Role Evolution in a Cyberinfrastructure Project. 201-211 - Nasir U. Eisty
A Survey of Software Metric Use in Research Software Development. 212-222 - Kunal Lillaney, Dean Kleissas, Alexander Eusman, Eric A. Perlman, William R. Gray Roncal, Joshua T. Vogelstein, Randal C. Burns
Building NDStore Through Hierarchical Storage Management and Microservice Processing. 223-233 - Karima Rafes, Serge Abiteboul, Sarah Cohen Boulakia, Bastien Rance:
Designing Scientific SPARQL Queries Using Autocompletion by Snippets. 234-244 - Isuru Suriarachchi, Sachith Withana
Big Provenance Stream Processing for Data Intensive Computations. 245-255 - Tyler J. Skluzacek, Rohan Kumar, Ryan Chard, Galen Harrison, Paul G. Beckman, Kyle Chard
Skluma: An Extensible Metadata Extraction Pipeline for Disorganized Data. 256-266
Focused Sessions
Weather & Climate Science in the Digital Era
- Peter Bauer, Martine de Vos:
Message from the eScience 2018 Program Committee Chairs for the Focused Session on Weather & Climate Science in the Digital Era. 267 - Marc Stringer, Colin Jones, Richard Hill, Mohit Dalvi, Colin Johnson, Jeremy Walton
A Hybrid-Resolution Earth System Model. 268-269 - Fredrik Jansson, Gijs van den Oord, Pier Siebesma, Daan Crommelin
Resolving Clouds in a Global Atmosphere Model - A Multiscale Approach with Nested Models. 270 - Jorg Behrens, Joachim Biercamp, Hendryk Bockelmann, Philipp Neumann
Increasing Parallelism in Climate Models Via Additional Component Concurrency. 271 - Etienne Brangbour, Pierrick Bruneau
Extracting Flood Maps from Social Media for Assimilation. 272-273 - Mohan Ramamurthy:
Toward a Cloud Ecosystem for Modeling as a Service. 274-275 - Sue Ellen Haupt, Jim Cowie, Seth Linden, Tyler C. McCandless
Machine Learning for Applied Weather Prediction. 276-277 - Driss Bari
Visibility Prediction Based on Kilometric NWP Model Outputs Using Machine-Learning Regression. 278 - Ronald van Haren, Sytse Koopmans
Weather Reanalysis on an Urban Scale using WRF. 279-280 - Irene Garcia Martí, Gerard van der Schrier, Jan Willem Noteboom, Paul Diks:
Detecting Probability of Ice Formation on Overhead Lines of the Dutch Railway Network. 281-282 - Martin G. Schultz, Sander Apweiler, Jan Vogelsang
A Web Service Architecture for Objective Station Classification Purposes. 283-284
Data Handling and Analytics for Health
- Jaap Heringa, Vincent T. van Hees
Message from the eScience 2018 Program Committee Chairs for the Focused Session on Data Handling and Analytics for Health. 285 - Sonia Difrancesco, Vadim Zipunnikov, Robert A. Schoevers, Harriëtte Riese, Niki Antypa, Brenda W. J. H. Penninx, Kathleen R. Merikangas, Albert A. M. van Hemert, Femke Lamers:
Gross Motor Activity Patterns in Depression and Anxiety. 286 - Veli-Matti Partanen, Maiju Pankakoski, Zurab Bzhalava, Piret Veerus, Ahti Anttila, Tytti Sarkeala, Ameli Trope, Stefan Lonnberg, Sirpa Heinavaara, Joakim Dillner, Agust Ingi Agustsson:
NordScreen - An Interactive Tool for Presenting Cervical Cancer Screening Indicators in the Nordic Countries. 287 - Nicholas Baltzer, Mari Nygård, Karin Sundstrom, Joakim Dillner, Jan Nygård, Jan Komorowski
Stratifying Cervical Cancer Risk with Registry Data. 288-289 - Lauren Roberts, Peter Michalák, Sarah E. Heaps
Automating the Placement of Time Series Models for IoT Healthcare Applications. 290-291 - Magnus Palmblad
Semantically Enriched Literature Search Combining Text Mining, QSPR and Ontologies in Scientific Workflows. 292 - Kalle Parn, Matti Pirinen
Differences in the Commonly used Genotype Imputation Algorithms and Their Imputation Accuracy Estimates. 293-294 - Rebecka Weegar:
Mining Events Preceding a Cancer Diagnosis. 295-296 - Shaheen A. Abdulkareem
The Impact of Social Versus Individual Learning for Agents' Risk Perception During Epidemics. 297-298 - Yassene Mohammed
Workflows Orchestrating Workflows: Thousands of Queries and Their Fault Tolerance Using APIs of Omics Web Resources. 299-300 - Shuang Li, K. Joeri van der Velde, Morris A. Swertz:
Machine Learning for Multi-Omics Data Integration and Variant Pathogenicity Estimation. 301 - Shane Halloran, Jian Qing Shi, Yu Guan, Xi Chen, Michael Dunne-Willows, Janet A. Eyre:
Remote Cloud-Based Automated Stroke Rehabilitation Assessment Using Wearables. 302 - Arnold Kuzniar, Jason Maassen
A Portable and Scalable Workflow for Detecting Structural Variants in Whole-Genome Sequencing Data. 303-304 - Mai H. Nguyen, Ehab Abdelmaguid, Jolene Huang, Sanjay Kenchareddy, Disha Singla, Laura Wilke, Marcus Bobar, Eric D. Carruth
Analytics Pipeline for Left Ventricle Segmentation and Volume Estimation on Cardiac MRI Using Deep Learning. 305-306
Advances in eScience for the Humanities and Social Sciences
- Claes H. de Vreese, Carlos Martinez-Ortiz
Message from the eScience 2018 Program Committee Chairs for the Focused Session on Advances in eScience for the Humanities and Social Sciences. 307 - Erik-Lân Do Dinh, Iryna Gurevych, Petra Gehring:
Filter and Annotate: Towards Automatic Identification of Genuine Metaphoricity. 308-309 - Theo B. Araujo
Extracting Theory from Black Boxes: Using Machine Vision APIs in Communication Research. 310-311 - Dafne E. van Kuppevelt, Frank W. Takes
Understanding Evolving Communities in Transnational Board Interlock Networks. 312-313 - Gioele Barabucci, Mark Eschweiler, Andreas Speer:
TI-One: Active Research Data Management in a Modern Philosophy Department. 314-315 - Carsten Thiel
Software Engineering and Digital Research Infrastructures. 316-317 - Johannes Daxenberger, Marc Ziegele, Iryna Gurevych, Oliver Quiring
Automatically Detecting Incivility in Online Discussions of News Media. 318-319 - Mark Alfano
Social Network-Epistemology. 320-321 - Raquel Alegre, Anastasis Georgoulas
Democratizing Ancient Mesopotamian Research through Digital Scholarship. 322 - Pedro Bispo Santos, Caroline Verena Wahle, Iryna Gurevych:
Using Facial Expressions of Students for Detecting Levels of Intrinsic Motivation. 323-324 - You-Wei Cheah, Drew Paine
Bringing Data Science to Qualitative Analysis. 325-326 - Richard Eckart de Castilho, Jan-Christoph Klie, Naveen Kumar, Beto Boullosa, Iryna Gurevych:
Linking Text and Knowledge Using the INCEpTION Annotation Platform. 327-328 - Damian Trilling, Bob van de Velde, Anne C. Kroon, Felicia Löcherbach
INCA: Infrastructure for Content Analysis. 329-330
Exascale Computing for High-Energy Physics
- Jeff Templon, Yifat Dzigan
Message from the eScience 2018 Program Committee Chairs for the Focused Session on Exascale Computing for High-Energy Physics. 331 - Jaroslava Schovancová, Simone Campana, Xavier Espinal Curull
Understanding the Performance of a Prototype of a WLCG Data Lake for HL-LHC. 332-333 - Joaquin Bogado, Fernando Monticelli, Javier Díaz, Mario Lassnig, Ilija Vukotic:
Modelling High-Energy Physics Data Transfers. 334-335 - Diego Ciangottini, Daniele Spiga, Tommaso Boccali, Giacinto Donvito
Distributed and On-demand Cache for CMS Experiment at LHC. 336-337 - Doug Benjamin, Paolo Calafiura
Fine-Grained Processing Towards HL-LHC Computing in ATLAS. 338 - Tim Martin:
Implementation of the ATLAS Trigger Within the ATLAS Multi-threaded Software Framework AthenaMT. 339 - Alexey A. Poyda, Mikhail Titov
Modeling Impact of Execution Strategies on Resource Utilization. 340 - V. Ananthraj, Kaushik De, Shantenu Jha, Alexei Klimentov, Danila Oleynik, Sarp H. Oral, André Merzky, Ruslan Mashinistov, Sergey Panitkin, P. Svirin, Matteo Turilli
Towards Exascale Computing for High Energy Physics: The ATLAS Experience at ORNL. 341-342 - Charles Leggett, Illya Shapoval:
Simulating HEP Workflows on Heterogeneous Architectures. 343 - Paolo Calafiura
TrackML: A High Energy Physics Particle Tracking Challenge. 344 - E. G. Patrick Bos, F. Inti Pelupessy, Vincent A. Croft, Wouter Verkerke, Carsten D. Burgard:
Automated Parallel Calculation of Collaborative Statistical Models in RooFit. 345-346 - Michael D. Hildreth, Elizabeth Sexton-Kennedy, Kevin Pedro, Matti Kortelainen:
Strategies for Modeling Extreme Luminosities in the CMS Simulation. 347 - Dalila Salamani, Stefan Gadatsch, Tobias Golling, Graeme Andrew Stewart, Aishik Ghosh
Deep Generative Models for Fast Shower Simulation in ATLAS. 348
Poster Session
- Ben van Werkhoven, Adriënne Mendrik, Rob van Nieuwpoort:
Poster Abstracts eScience 2018 Conference. 349 - Felicia Löcherbach
3bij3: A Framework for Testing Effects of Recommender Systems on News Exposure. 350-351 - Tim Shaffer
A First Look at the JX Workflow Language. 352-353 - Viktor Bakayov, Romulo Goncalves, Raúl Zurita-Milla, Emma Izquierdo-Verdiguier
A Spark-Based Platform to Extract Phenological Information from Satellite Images. 354-355 - Davide Ceolin
Assessing and Visualising Online Information Quality. 356-357 - M. E. Pozo Astigarraga:
ATLAS Trigger and Data Acquisition Upgrades for the High Luminosity LHC. 358-359 - Anna-Lena Lamprecht
Automated Composition of Scientific Workflows in Mass Spectrometry-Based Proteomics. 360-361 - Vedran Kasalica
Automated Composition of Scientific Workflows: A Case Study on Geographic Data Manipulation. 362-363 - Claudia Schulz, Michael Sailer, Jan Kiesewetter, Elisabeth Bauer
Automatic Recommendations for Data Coding: A Use Case from Medical and Teacher Education. 364-365 - Jamie S. Farnes, Ben Mort, Fred Dulwich, Karel Adámek, Anna Brown, Jan Novotný, Stef Salvini, Wes Armour
Building the World's Largest Radio Telescope: The Square Kilometre Array Science Data Processor. 366-367 - Mikolaj Branowski, Adam Belloum:
Cookery: A Framework for Creating Data Processing Pipeline Using Online Services. 368-369 - Max Kemman:
Power Asymmetries of eHumanities Infrastructures. 370-371 - Claudio Atzori
De-duplicating the OpenAIRE Scholarly Communication Big Graph. 372-373 - F. Inti Pelupessy, Ben van Werkhoven, Gijs van den Oord, Simon Portegies Zwart, Arjen van Elteren, Henk A. Dijkstra:
Development of the OMUSE/AMUSE Modeling System. 374 - Laurens Bogaardt, Frank W. Takes
Estimating Subgraph Generation Models to Understand Large Network Formation. 375-376 - Elena Ranguelova, Eric J. Pauwels, Joost Berkhout
Evaluating Layer-Wise Relevance Propagation Explainability Maps for Artificial Neural Networks. 377-378 - Rolf Hut, Niels Drost
eWaterCycle II. 379 - Priyaa Thavasimani
Exploiting Execution Provenance to Explain Difference Between Two Data-Intensive Computations. 380-381 - Martine de Vos, Berend Weel, Adriënne M. Mendrik, Andre Dekker, Johan van Soest
Fast and Easy Mapping of Relational Data to RDF for Rapid Learning Health Care. 382-383 - Birgitte Vedel Thage, Lene Krøl Andersen:
How to Bring Value of Domain Specific Big Data in an Interdisciplinary Way? A Software Landscape. 384-385 - Sarod Yatawatta
Improving LBFGS Optimizer in PyTorch: Knowledge Transfer from Radio Interferometric Calibration to Machine Learning. 386-387 - Lise Stork, Andreas Weber
Linking Natural History Collections. 388-389 - Dharmendra Prasad Mahato
Modeling of Load Balanced Scheduling and Reliability Evaluation for On-demand Computing Based Transaction Processing System. 390-391 - Brennan Bell, Tilman Dinter, Vlad Merticariu, Bang Pham Huu, Dimitar Misev, Peter Baumann
Navigating Sea-Ice Timeseries Data using Tracklines. 392 - Timo Petteri Sipila, Andres Metspalu, Paavo Happola, Priit Palta
Nordic Exome Variant Catalogue a Web Resource for Genomic Data Browsing. 393 - Luis Oliveira, David Wilkinson, Daniel Mossé, Bruce R. Childers:
Occam: Software Environment for Creating Reproducible Research. 394-395 - P. Chris Broekema, Verity L. Allan, Henri E. Bal:
On Optimising Cost and Value in eScience: Case Studies in Radio Astronom. 396 - Anne Dirkson, Suzan Verberne, Gerard Van Oortmerssen, Hans Gelderblom, Wessel Kraaij:
Open Knowledge Discovery and Data Mining from Patient Forums. 397-398 - Carl Witt, Dennis Wagner, Ulf Leser:
POS: Online Learning for Memory-Aware Scheduling of Scientific Workflows. 399-400 - Gijs van den Oord, Xavier Yepes, Mario C. Acosta
Post-Processing Strategies for the ECMWF Model. 401 - Jens Weismüller, Anton Frank:
Scientific Partnership: A Pledge for a New Level of Collaboration between Scientists and IT Specialists. 402 - Tibor Simko, Kyle Cranmer, Michael R. Crusoe
Search for Computational Workflow Synergies in Reproducible Research Data Analyses in Particle Physics and Life Sciences. 403-404 - Athanasios Ballis, Alice Boizet, Leonardo Candela
Serving Scientists in Agri-Food Area by Virtual Research Environments. 405-406 - Seyran Khademi, Xiangwei Shi, Tino Mager
Sight-Seeing in the Eyes of Deep Neural Networks. 407-408 - Matthias Kempe
Smart Data Scouting in Professional Soccer: Evaluating Passing Performance Based on Position Tracking Data. 409-410 - Faruk Diblen, Jisk Attema
SPOT: Open Source Visual Data Analytics Platform for High-Dimensional Scientific Data. 411 - Andrew James Williams
The Results and Challenges of Using Administrative Health Data Within a Natural Experimental Evaluation of the Abolition of Prescription Fees in Scotland. 412 - Menno-Jan Kraak, Andreas Weber
Toward VR Eventscapes for Spatio-Temporal Access to Digital Maritime Heritage. 413-414
Plenary Session
- Eduardo Rocha Rodrigues, Igor Oliveira, Renato Luiz de Freitas Cunha
DeepDownscale: A Deep Learning Strategy for High-Resolution Weather Forecast. 415-422 - Renato Luiz de Freitas Cunha
A Scalable Machine Learning System for Pre-Season Agriculture Yield Forecast. 423-430 - Lucas Augusto M. C. Carvalho, Daniel Garijo, Claudia Bauzer Medeiros, Yolanda Gil
Semantic Software Metadata for Workflow Exploration and Evolution. 431-441 - Jong Youl Choi, Choong-Seock Chang
Coupling Exascale Multiphysics Applications: Methods and Lessons Learned. 442-452 - Roee Ebenstein, Gagan Agrawal, Jiali Wang, Joshua M. Boley, Rajkumar Kettimuthu:
FDQ: Advance Analytics Over Real Scientific Array Datasets. 453-463 - Javier Conejero
Boosting Atmospheric Dust Forecast with PyCOMPSs. 464-474 - Anirudh Joshi, Richard O. Sinnott:
Modelling Implicit Content Networks to Track Information Propagation Across Media Sources to Analyze News Events. 475-485 - Aysenur Bilgin, Erik Tjong Kim Sang, Kim Smeenk, Laura Hollink, Jacco van Ossenbruggen
Utilizing a Transparency-Driven Environment Toward Trusted Automatic Genre Classification: A Case Study in Journalism History. 486-496 - Anthony Truskinger
Visualizing five decades of environmental acoustic data. 1-10 - Jared O'Neal
Experience report: refactoring the mesh interface in FLASH, a multiphysics software. 1-6
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