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Magnus Palmblad

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affiliation: Leiden University Medical Center, The Netherlands

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2020 – today

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2023
[i4]
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  - journals/dagstuhl-reports/GundryMP23
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Rebekah L. Gundry, Lennart Martens, Magnus Palmblad:
Computational Proteomics (Dagstuhl Seminar 23301). Dagstuhl Reports 13(7): 152-165 (2023)
2021
[j8]
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  - journals/bioinformatics/MarissenP21
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Rob Marissen, Magnus Palmblad:
mzRecal: universal MS1 recalibration in mzML using identified peptides in mzIdentML as internal calibrants. Bioinform. 37(17): 2768-2769 (2021)
[i3]
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  - journals/dagstuhl-reports/BockerGMP21
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Sebastian Böcker, Rebekah L. Gundry, Lennart Martens, Magnus Palmblad:
Computational Proteomics (Dagstuhl Seminar 21271). Dagstuhl Reports 11(6): 1-13 (2021)
[i2]
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  - journals/f1000research/LamprechtPISMABACCCGGGGIJ21
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Anna-Lena Lamprecht, Magnus Palmblad, Jon C. Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J. O. Baker, Ammar Ben Hadj Amor, Salvador Capella-Gutiérrez, Paulos Charonyktakis, Michael R. Crusoe, Yolanda Gil, Carole A. Goble, Timothy J. Griffin, Paul Groth, Hans Ienasescu, Pratik D. Jagtap, Matús Kalas, Vedran Kasalica, Alireza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A. Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szaniszlo Szoke, Suzan Verberne, Aswin Verhoeven, Katherine Wolstencroft:
Perspectives on automated composition of workflows in the life sciences. F1000Research 10: 897 (2021)
2020
[j7]
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Jon C. Ison, Hervé Ménager, Bryan Brancotte, Erik Jaaniso, Ahto Salumets, Tomás Racek, Anna-Lena Lamprecht, Magnus Palmblad, Matús Kalas, Piotr Chmura, John M. Hancock, Veit Schwämmle, Hans-Ioan Ienasescu:
Community curation of bioinformatics software and data resources. Briefings Bioinform. 21(5): 1697-1705 (2020)
[i1]
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  - journals/corr/abs-2005-09941
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Reinier Vleugels, Magnus Palmblad:
Non-Uniform Gaussian Blur of Hexagonal Bins in Cartesian Coordinates. CoRR abs/2005.09941 (2020)

2010 – 2019

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2019
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  - journals/bioinformatics/PalmbladLIS19
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Magnus Palmblad, Anna-Lena Lamprecht, Jon C. Ison, Veit Schwämmle:
Automated workflow composition in mass spectrometry-based proteomics. Bioinform. 35(4): 656-664 (2019)
2018
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  - journals/bib/MohammedP18
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Yassene Mohammed, Magnus Palmblad:
Visualizing and comparing results of different peptide identification methods. Briefings Bioinform. 19(2): 210-218 (2018)
[c7]
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  - conf/eScience/Palmblad18
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Magnus Palmblad:
Semantically Enriched Literature Search Combining Text Mining, QSPR and Ontologies in Scientific Workflows. eScience 2018: 292
[c6]
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Anna-Lena Lamprecht, Magnus Palmblad, Jon C. Ison, Veit Schwämmle:
Automated Composition of Scientific Workflows in Mass Spectrometry-Based Proteomics. eScience 2018: 360-361
2016
[j4]
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  - journals/joi/GulerWMP16
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Arzu Tugce Guler, Cathelijn J. F. Waaijer, Yassene Mohammed, Magnus Palmblad:
Automating bibliometric analyses using Taverna scientific workflows: A tutorial on integrating Web Services. J. Informetrics 10(3): 830-841 (2016)
[j3]
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Arzu Tugce Guler, Cathelijn J. F. Waaijer, Magnus Palmblad:
Scientific workflows for bibliometrics. Scientometrics 107(2): 385-398 (2016)
2015
[j2]
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  - journals/bmcbi/HollMZP15
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Sonja Holl, Yassene Mohammed, Olav Zimmermann, Magnus Palmblad:
Scientific workflow optimization for improved peptide and protein identification. BMC Bioinform. 16: 284:1-284:13 (2015)
[c5]
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Arzu Tugce Guler, Cathelijn J. F. Waaijer, Magnus Palmblad:
Scientific Workflows for Bibliometrics. ISSI 2015
[c4]
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Cathelijn J. F. Waaijer, Magnus Palmblad:
Bibliometric Mapping: Eight Decades of Analytical Chemistry, With Special Focus on the Use of Mass Spectrometry. ISSI 2015
2014
[j1]
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  - journals/fgcs/HollZPMH14
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Sonja Holl, Olav Zimmermann, Magnus Palmblad, Yassene Mohammed, Martin Hofmann-Apitius:
A new optimization phase for scientific workflow management systems. Future Gener. Comput. Syst. 36: 352-362 (2014)
[c3]
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Yassene Mohammed, Dominik Domanski, Angela M. Jackson, Derek Smith, André M. Deelder, Magnus Palmblad, Christoph H. Borchers:
Automatic Peptides Selection for Targeted Proteomics. IWBBIO 2014: 1615
2013
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Sonja Holl, M. Shahbaz Memon, Bernd Schuller, Morris Riedel, Yassene Mohammed, Magnus Palmblad, Andrew S. Grimshaw:
Enhanced Resource Management Enabling Standard Parameter Sweep Jobs for Scientific Applications. ICPP 2013: 783-790
2011
[c1]
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  - conf/eScience/MohammedSKLSCKPO11
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Yassene Mohammed, Shayan Shahand, Vladimir Korkhov, Angela C. M. Luyf, Barbera D. C. van Schaik, Matthan W. A. Caan, Antoine H. C. van Kampen, Magnus Palmblad, Sílvia D. Olabarriaga:
Data Decomposition in Biomedical e-Science Applications. e-Science Workshops 2011: 158-165

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