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Yassene Mohammed

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2020 – today

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2024
[i1]
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  - journals/corr/abs-2407-15220
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Yuliya Burankova, Miriam Abele, Mohammad Bakhtiari, Christine von Törne, Teresa Barth, Lisa Schweizer, Pieter Giesbertz, Johannes R. Schmidt, Stefan Kalkhof, Janina Müller-Deile, Peter A. van Veelen, Yassene Mohammed, Elke Hammer, Lis Arend, Klaudia Adamowicz, Tanja Laske, Anne Hartebrodt, Tobias Frisch, Chen Meng, Julian O. Matschinske, Julian Späth, Richard Röttger, Veit Schwämmle, Stefanie M. Hauck, Stefan Lichtenthaler, Axel Imhof, Matthias Mann, Christina Ludwig, Bernhard Küster, Jan Baumbach, Olga I. Zolotareva:
Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt. CoRR abs/2407.15220 (2024)
2021
[j8]
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  - journals/bioinformatics/MohammedBMSB21
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Yassene Mohammed, Pallab Bhowmick, Sarah A. Michaud, Albert Sickmann, Christoph H. Borchers:
Mouse Quantitative Proteomics Knowledgebase: reference protein concentration ranges in 20 mouse tissues using 5000 quantitative proteomics assays. Bioinform. 37(13): 1900-1908 (2021)

2010 – 2019

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2018
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Yassene Mohammed, Magnus Palmblad:
Visualizing and comparing results of different peptide identification methods. Briefings Bioinform. 19(2): 210-218 (2018)
[j6]
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Pallab Bhowmick, Yassene Mohammed, Christoph H. Borchers:
MRMAssayDB: an integrated resource for validated targeted proteomics assays. Bioinform. 34(20): 3566-3571 (2018)
[c10]
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Yassene Mohammed:
Workflows Orchestrating Workflows: Thousands of Queries and Their Fault Tolerance Using APIs of Omics Web Resources. eScience 2018: 299-300
2016
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  - journals/joi/GulerWMP16
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Arzu Tugce Guler, Cathelijn J. F. Waaijer, Yassene Mohammed, Magnus Palmblad:
Automating bibliometric analyses using Taverna scientific workflows: A tutorial on integrating Web Services. J. Informetrics 10(3): 830-841 (2016)
2015
[j4]
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  - journals/bmcbi/HollMZP15
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Sonja Holl, Yassene Mohammed, Olav Zimmermann, Magnus Palmblad:
Scientific workflow optimization for improved peptide and protein identification. BMC Bioinform. 16: 284:1-284:13 (2015)
2014
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Sonja Holl, Olav Zimmermann, Magnus Palmblad, Yassene Mohammed, Martin Hofmann-Apitius:
A new optimization phase for scientific workflow management systems. Future Gener. Comput. Syst. 36: 352-362 (2014)
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Henning Perl, Yassene Mohammed, Michael Brenner, Matthew Smith:
Privacy/performance trade-off in private search on bio-medical data. Future Gener. Comput. Syst. 36: 441-452 (2014)
[c9]
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Yassene Mohammed, Dominik Domanski, Angela M. Jackson, Derek Smith, André M. Deelder, Magnus Palmblad, Christoph H. Borchers:
Automatic Peptides Selection for Targeted Proteomics. IWBBIO 2014: 1615
2013
[c8]
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  - conf/icpp/HollMSRMPG13
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Sonja Holl, M. Shahbaz Memon, Bernd Schuller, Morris Riedel, Yassene Mohammed, Magnus Palmblad, Andrew S. Grimshaw:
Enhanced Resource Management Enabling Standard Parameter Sweep Jobs for Scientific Applications. ICPP 2013: 783-790
2012
[c7]
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  - conf/eScience/PerlMBS12
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Henning Perl, Yassene Mohammed, Michael Brenner, Matthew Smith:
Fast confidential search for bio-medical data using Bloom filters and Homomorphic Cryptography. eScience 2012: 1-8
2011
[c6]
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Yassene Mohammed, Shayan Shahand, Vladimir Korkhov, Angela C. M. Luyf, Barbera D. C. van Schaik, Matthan W. A. Caan, Antoine H. C. van Kampen, Magnus Palmblad, Sílvia D. Olabarriaga:
Data Decomposition in Biomedical e-Science Applications. e-Science Workshops 2011: 158-165
2010
[c5]
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  - conf/healthgrid/MohammedSDLSVSR10
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Yassene Mohammed, Ulrich Sax, Frank Dickmann, Jörg Lippert, Juri Solodenko, Gabriele von Voigt, Matthew Smith, Otto Rienhoff:
On Transferring the Grid Technology to the Biomedical Community. HealthGrid 2010: 28-39
[c4]
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  - conf/medinfo/MohammedDSV0R10
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Yassene Mohammed, Frank Dickmann, Ulrich Sax, Gabriele von Voigt, Matthew Smith, Otto Rienhoff:
Reaching for the Cloud: On the Lessons Learned from Grid Computing Technology Transfer Process to the Biomedical Community. MedInfo 2010: 1339-1343

2000 – 2009

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2009
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  - journals/fgcs/KreftingBBDFHHKLMPRSSSTVVW09
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Dagmar Krefting, Julian Bart, Kamen Beronov, Olga Dzhimova, Jürgen Falkner, Michael Hartung, Andreas Hoheisel, Tobias A. Knoch, Thomas Lingner, Yassene Mohammed, Kathrin Peter, Erhard Rahm, Ulrich Sax, Dietmar Sommerfeld, Thomas Steinke, Thomas Tolxdorff, Michal Vossberg, Fred Viezens, Anette Weisbecker:
MediGRID: Towards a user friendly secured grid infrastructure. Future Gener. Comput. Syst. 25(3): 326-336 (2009)
[c3]
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  - conf/gecon/DickmannKLKVHLMTSBKKS09
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Frank Dickmann, Mathias Kaspar, Benjamin Löhnhardt, Nick Kepper, Fred Viezens, Frank Hertel, Michael Lesnussa, Yassene Mohammed, Andreas Thiel, Thomas Steinke, Johannes Bernarding, Dagmar Krefting, Tobias A. Knoch, Ulrich Sax:
Visualization in Health Grid Environments: A Novel Service and Business Approach. GECON 2009: 150-159
2008
[b1]
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  - phd/de/Mohammed2008
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Yassene Mohammed:
Data protection and data security concept for medical applications in a grid computing environment. University of Göttingen, 2008
2007
[c2]
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Yassene Mohammed, Ulrich Sax, Fred Viezens, Otto Rienhoff:
Shortcomings of Current Grid Middlewares Regarding Privacy in HealthGrids. HealthGrid 2007: 322-329
[c1]
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Yassene Mohammed, Sabine Rey, Fabian Rakebrandt, Ulrich Sax:
The Integration of Grid Resources into a Portal for Research Collaboratories. MedInfo 2007: 335-339

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