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2024
[c68]
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Daniel Garijo, Miguel Arroyo, Esteban González, Christoph Treude, Nicola Tarocco:
Bidirectional Paper-Repository Tracing in Software Engineering. MSR 2024: 642-646
[c67]
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Aleksandar Stankovski, Daniel Garijo:
RepoFromPaper: An Approach to Extract Software Code Implementations from Scientific Publications. NSLP 2024: 100-113
[c66]
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Carlos Utrilla Guerrero, Óscar Corcho, Daniel Garijo:
Automated Extraction of Research Software Installation Instructions from README Files: An Initial Analysis. NSLP 2024: 114-133
[c65]
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Jenifer Tabita Ciuciu-Kiss, Daniel Garijo:
Assessing the Overlap of Science Knowledge Graphs: A Quantitative Analysis. NSLP 2024: 171-185
[e8]
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Daniel Garijo, Anna Lisa Gentile, Anelia Kurteva, Andrea Mannocci, Francesco Osborne, Sahar Vahdati:
Joint Proceedings of Posters, Demos, Workshops, and Tutorials of the 20th International Conference on Semantic Systems co-located with 20th International Conference on Semantic Systems (SEMANTiCS 2024), Amsterdam, The Netherlands, September 17-19, 2024. CEUR Workshop Proceedings 3759, CEUR-WS.org 2024 [contents]
[e7]
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Irini Fundulaki, Kouji Kozaki, Daniel Garijo, José Manuél Gómez-Pérez:
Proceedings of the ISWC 2023 Posters, Demos and Industry Tracks: From Novel Ideas to Industrial Practice co-located with 22nd International Semantic Web Conference (ISWC 2023), Athens, Greece, November 6-10, 2023. CEUR Workshop Proceedings 3632, CEUR-WS.org 2024 [contents]
[i13]
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  - journals/corr/abs-2410-03490
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Sean R. Wilkinson, Meznah Aloqalaa, Khalid Belhajjame, Michael R. Crusoe, Bruno de Paula Kinoshita, Luiz Gadelha, Daniel Garijo, Ove Johan Ragnar Gustafsson, Nick S. Juty, Sehrish Kanwal, Farah Zaib Khan, Johannes Köster, Karsten Peters-von Gehlen, Line Pouchard, Randy K. Rannow, Stian Soiland-Reyes, Nicola Soranzo, Shoaib Sufi, Ziheng Sun, Baiba Vilne, Merridee A. Wouters, Denis Yuen, Carole A. Goble:
Applying the FAIR Principles to Computational Workflows. CoRR abs/2410.03490 (2024)
2023
[j20]
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Timo Schaffhauser, Daniel Garijo, Maximiliano Osorio, Daniel Bittner, Suzanne A. Pierce, Hernán Vargas, Markus Disse, Yolanda Gil:
A framework for the broad dissemination of hydrological models for non-expert users. Environ. Model. Softw. 164: 105695 (2023)
[c64]
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Óscar Corcho, Malgorzata Wolniewicz, Adam Aron Rynkiewicz, Esteban González, Daniel Garijo, Raúl Palma:
FAIR Research Object Assessment: A landscape analysis. DaMaLOS 2023
[c63]
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Antonia Floriana Pavel, Daniel Garijo:
Ya2ro: A tool for creating Research Objects from minimum metadata. DaMaLOS 2023
[c62]
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Ioannis Dasoulas, David Chaves-Fraga, Daniel Garijo, Anastasia Dimou:
Declarative RDF Construction from In-Memory Data Structures with RML. KGCW@ESWC 2023
[c61]
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Ana Iglesias-Molina, Daniel Garijo:
Towards Assessing FAIR Research Software Best Practices in an Organization Using RDF-star. SEMANTiCS (Posters & Demos) 2023
[c60]
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Esteban González-Guardia, Hector Lopez, Daniel Garijo:
Softalias-KG: Reconciling Software Mentions in Scientific Literature. ISWC (Posters/Demos/Industry) 2023
[c59]
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  - conf/semweb/MarkovicGGN23
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Milan Markovic, Daniel Garijo, Stefano Germano, Iman Naja:
TEC: Transparent Emissions Calculation Toolkit. ISWC 2023: 76-93
[c58]
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  - conf/wikidata/BolinchesG23
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Jorge Bolinches, Daniel Garijo:
SALTBot: Linking Software and Articles in Wikidata. Wikidata@ISWC 2023
[e6]
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Kristen Brent Venable, Daniel Garijo, Brian Jalaian:
Proceedings of the 12th Knowledge Capture Conference 2023, K-CAP 2023, Pensacola, FL, USA, December 5-7, 2023. ACM 2023 [contents]
[i12]
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  - journals/corr/abs-2312-07852
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Simone Leo, Michael R. Crusoe, Laura Rodríguez-Navas, Raül Sirvent, Alexander Kanitz, Paul De Geest, Rudolf Wittner, Luca Pireddu, Daniel Garijo, José M. Fernández, Iacopo Colonnelli, Matej Gallo, Tazro Ohta, Hirotaka Suetake, Salvador Capella-Gutiérrez, Renske de Wit, Bruno de Paula Kinoshita, Stian Soiland-Reyes:
Recording provenance of workflow runs with RO-Crate. CoRR abs/2312.07852 (2023)
2022
[j19]
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  - journals/aimatters/GuerzhoyNJJCGLM22
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Michael Guerzhoy, Marion Neumann, Emmanuel Johnson, David Johnson, Henry Chai, Daniel Garijo, Zhuoyue Lyu, Christopher J. MacLellan:
EAAI-22 Blue Sky Ideas in Artificial Intelligence Education from the AAAI/ACM SIGAI New and Future AI Educator Program. AI Matters 8(2): 16-21 (2022)
[j18]
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  - journals/datasci/Soiland-ReyesSC22
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Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José María Fernández, Daniel Garijo, Björn A. Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole A. Goble:
Packaging research artefacts with RO-Crate. Data Sci. 5(2): 97-138 (2022)
[j17]
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  - journals/ijseke/OsorioASG22
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Maximiliano Osorio, Carlos Buil-Aranda, Idafen Santana-Pérez, Daniel Garijo:
DockerPedia: A Knowledge Graph of Software Images and Their Metadata. Int. J. Softw. Eng. Knowl. Eng. 32(1): 71-89 (2022)
[j16]
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  - journals/pdln/Navas-LoroGC22
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María Navas-Loro, Daniel Garijo, Óscar Corcho:
Multi-label Text Classification for Public Procurement in Spanish. Proces. del Leng. Natural 69: 73-82 (2022)
[j15]
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  - journals/peerj-cs/GarijoMHTHMA22
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Daniel Garijo, Hervé Ménager, Lorraine J. Hwang, Ana Trisovic, Michael Hucka, Thomas Morrell, Alice Allen:
Nine best practices for research software registries and repositories. PeerJ Comput. Sci. 8: e1023 (2022)
[j14]
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  - journals/ws/ShenoyIGSS22
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Kartik Shenoy, Filip Ilievski, Daniel Garijo, Daniel Schwabe, Pedro A. Szekely:
A study of the quality of Wikidata. J. Web Semant. 72: 100679 (2022)
[c57]
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  - conf/cogsci/GilKORVGP22
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Yolanda Gil, Deborah Khider, Maximiliano Osorio, Varun Ratnakar, Hernán Vargas, Daniel Garijo, Suzanne A. Pierce:
Towards Capturing Scientific Reasoning to Automate Data Analysis. CogSci 2022
[c56]
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  - conf/ekaw/Espinoza-AriasG22
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Paola Espinoza-Arias, Daniel Garijo, Óscar Corcho:
Extending Ontology Engineering Practices to Facilitate Application Development. EKAW 2022: 19-35
[c55]
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  - conf/ercimdl/GonzalezBG21
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Esteban González, Alejandro Benítez, Daniel Garijo:
FAIROs: Towards FAIR Assessment in Research Objects. TPDL 2022: 68-80
[c54]
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  - conf/msr/FilgueiraG22
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Rosa Filgueira, Daniel Garijo:
Inspect4py: A Knowledge Extraction Framework for Python Code Repositories. MSR 2022: 232-236
[c53]
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  - conf/www/0001RWWJ0NMASLB22
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Riccardo Tommasini, Senjuti Basu Roy, Xuan Wang, Hongwei Wang, Heng Ji, Jiawei Han, Preslav Nakov, Giovanni Da San Martino, Firoj Alam, Markus Schedl, Elisabeth Lex, Akash Bharadwaj, Graham Cormode, Milan Dojchinovski, Jan Forberg, Johannes Frey, Pieter Bonte, Marco Balduini, Matteo Belcao, Emanuele Della Valle, Junliang Yu, Hongzhi Yin, Tong Chen, Haochen Liu, Yiqi Wang, Wenqi Fan, Xiaorui Liu, Jamell Dacon, Lingjuan Lye, Jiliang Tang, Aristides Gionis, Stefan Neumann, Bruno Ordozgoiti, Simon Razniewski, Hiba Arnaout, Shrestha Ghosh, Fabian M. Suchanek, Lingfei Wu, Yu Chen, Yunyao Li, Bang Liu, Filip Ilievski, Daniel Garijo, Hans Chalupsky, Pedro A. Szekely, Ilias Kanellos, Dimitris Sacharidis, Thanasis Vergoulis, Nurendra Choudhary, Nikhil Rao, Karthik Subbian, Srinivasan H. Sengamedu, Chandan K. Reddy, Friedhelm Victor, Bernhard Haslhofer, George Katsogiannis-Meimarakis, Georgia Koutrika, Shengmin Jin, Danai Koutra, Reza Zafarani, Yulia Tsvetkov, Vidhisha Balachandran, Sachin Kumar, Xiangyu Zhao, Bo Chen, Huifeng Guo, Yejing Wang, Ruiming Tang, Yang Zhang, Wenjie Wang, Peng Wu, Fuli Feng, Xiangnan He:
Accepted Tutorials at The Web Conference 2022. WWW (Companion Volume) 2022: 391-399
[d5]
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María Navas-Loro, Daniel Garijo, Óscar Corcho:
CPV Classifier. Version 1. Zenodo, 2022 [all versions]
[d4]
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María Navas-Loro, Daniel Garijo, Óscar Corcho:
CPV Classifier. Version 2. Zenodo, 2022 [all versions]
2021
[j13]
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  - journals/qss/KelleyG21
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Aidan Kelley, Daniel Garijo:
A framework for creating knowledge graphs of scientific software metadata. Quant. Sci. Stud. 2(4): 1423-1446 (2021)
[j12]
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  - journals/tiis/GilGKKROVPPSVCF21
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Yolanda Gil, Daniel Garijo, Deborah Khider, Craig A. Knoblock, Varun Ratnakar, Maximiliano Osorio, Hernán Vargas, Minh Pham, Jay Pujara, Basel Shbita, Binh Vu, Yao-Yi Chiang, Dan Feldman, Yijun Lin, Hayley Song, Vipin Kumar, Ankush Khandelwal, Michael S. Steinbach, Kshitij Tayal, Shaoming Xu, Suzanne A. Pierce, Lissa Pearson, Daniel Hardesty-Lewis, Ewa Deelman, Rafael Ferreira da Silva, Rajiv Mayani, Armen R. Kemanian, Yuning Shi, Lorne Leonard, Scott D. Peckham, Maria Stoica, Kelly M. Cobourn, Zeya Zhang, Christopher J. Duffy, Lele Shu:
Artificial Intelligence for Modeling Complex Systems: Taming the Complexity of Expert Models to Improve Decision Making. ACM Trans. Interact. Intell. Syst. 11(2): 11:1-11:49 (2021)
[j11]
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Paola Espinoza-Arias, Daniel Garijo, Óscar Corcho:
Crossing the chasm between ontology engineering and application development: A survey. J. Web Semant. 70: 100655 (2021)
[c52]
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  - conf/semweb/ChalupskySIGS21
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Hans Chalupsky, Pedro A. Szekely, Filip Ilievski, Daniel Garijo, Kartik Shenoy:
Creating and Querying Personalized Versions of Wikidata on a Laptop. Wikidata@ISWC 2021
[c51]
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Daniel Garijo, Óscar Corcho, María Poveda-Villalón:
FOOPS!: An Ontology Pitfall Scanner for the FAIR principles. ISWC (Posters/Demos/Industry) 2021
[c50]
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  - conf/works-ws/SilvaCCABBCCNEF21
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Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Tainã Coleman, Frederik Coppens, Frank Di Natale, Bjoern Enders, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Daniel Garijo, Carole A. Goble, Dorran Howell, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Ulf Leser, Maciej Malawski, Kshitij Mehta, Loïc Pottier, Jonathan Ozik, J. Luc Peterson, Lavanya Ramakrishnan, Stian Soiland-Reyes, Douglas Thain, Matthew Wolf:
A Community Roadmap for Scientific Workflows Research and Development. WORKS 2021: 81-90
[d3]
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  - data/10/CorchoGG21
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Óscar Corcho, Esteban González-Guardia, Daniel Garijo:
Crosswalks among metadata schemas for data cube descriptions in RELIANCE. Zenodo, 2021
[d2]
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Paola Espinoza-Arias, Daniel Garijo, Óscar Corcho:
Scopus records. Zenodo, 2021
[i11]
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  - journals/corr/abs-2106-05177
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Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Tainã Coleman, Dan Laney, Dong H. Ahn, Shantenu Jha, Dorran Howell, Stian Soiland-Reyes, Ilkay Altintas, Douglas Thain, Rosa Filgueira, Yadu N. Babuji, Rosa M. Badia, Bartosz Balis, Silvina Caíno-Lores, Scott Callaghan, Frederik Coppens, Michael R. Crusoe, Kaushik De, Frank Di Natale, Tu Mai Anh Do, Bjoern Enders, Thomas Fahringer, Anne Fouilloux, Grigori Fursin, Alban Gaignard, Alex Ganose, Daniel Garijo, Sandra Gesing, Carole A. Goble, Adil Hasan, Sebastiaan Huber, Daniel S. Katz, Ulf Leser, Douglas Lowe, Bertram Ludäscher, Ketan Maheshwari, Maciej Malawski, Rajiv Mayani, Kshitij Mehta, André Merzky, Todd S. Munson, Jonathan Ozik, Loïc Pottier, Sashko Ristov, Mehdi Roozmeh, Renan Souza, Frédéric Suter, Benjamín Tovar, Matteo Turilli, Karan Vahi, Alvaro Vidal-Torreira, Wendy R. Whitcup, Michael Wilde, Alan R. Williams, Matthew Wolf, Justin M. Wozniak:
Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development. CoRR abs/2106.05177 (2021)
[i10]
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Kartik Shenoy, Filip Ilievski, Daniel Garijo, Daniel Schwabe, Pedro A. Szekely:
A Study of the Quality of Wikidata. CoRR abs/2107.00156 (2021)
[i9]
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  - journals/corr/abs-2108-06503
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Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José María Fernández, Daniel Garijo, Björn A. Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole A. Goble:
Packaging research artefacts with RO-Crate. CoRR abs/2108.06503 (2021)
[i8]
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  - journals/corr/abs-2108-07119
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Hans Chalupsky, Pedro A. Szekely, Filip Ilievski, Daniel Garijo, Kartik Shenoy:
Creating and Querying Personalized Versions of Wikidata on a Laptop. CoRR abs/2108.07119 (2021)
[i7]
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  - journals/corr/abs-2110-02168
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Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Tainã Coleman, Frederik Coppens, Frank Di Natale, Bjoern Enders, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Daniel Garijo, Carole A. Goble, Dorran Howell, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Ulf Leser, Maciej Malawski, Kshitij Mehta, Loïc Pottier, Jonathan Ozik, J. Luc Peterson, Lavanya Ramakrishnan, Stian Soiland-Reyes, Douglas Thain, Matthew Wolf:
A Community Roadmap for Scientific Workflows Research and Development. CoRR abs/2110.02168 (2021)
2020
[j10]
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Carole A. Goble, Sarah Cohen-Boulakia, Stian Soiland-Reyes, Daniel Garijo, Yolanda Gil, Michael R. Crusoe, Kristian Peters, Daniel Schober:
FAIR Computational Workflows. Data Intell. 2(1-2): 108-121 (2020)
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Daniel Garijo, Natalia Villanueva-Rosales, Tomi Kauppinen:
Editorial: Special issue on Semantic eScience: Methods, tools and applications. Semantic Web 11(5): 731-733 (2020)
[c49]
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María Poveda-Villalón, Paola Espinoza-Arias, Daniel Garijo, Óscar Corcho:
Coming to Terms with FAIR Ontologies. EKAW 2020: 255-270
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Paola Espinoza-Arias, Daniel Garijo, Óscar Corcho:
Mapping the Web Ontology Language to the OpenAPI Specification. ER (Workshops) 2020: 117-127
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Daniel Garijo, Maximiliano Osorio:
OBA: An Ontology-Based Framework for Creating REST APIs for Knowledge Graphs. ISWC (2) 2020: 48-64
[c46]
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Daniel Garijo, Ke-Thia Yao, Amandeep Singh, Pedro A. Szekely:
A Template-Based Approach for Annotating Long-Tail Datasets. ASLD@ISWC 2020: 97-102
[c45]
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Filip Ilievski, Daniel Garijo, Hans Chalupsky, Naren Teja Divvala, Yixiang Yao, Craig Milo Rogers, Ronpeng Li, Jun Liu, Amandeep Singh, Daniel Schwabe, Pedro A. Szekely:
KGTK: A Toolkit for Large Knowledge Graph Manipulation and Analysis. ISWC (2) 2020: 278-293
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Daniel Garijo, María Poveda-Villalón:
Best Practices for Implementing FAIR Vocabularies and Ontologies on the Web. Applications and Practices in Ontology Design, Extraction, and Reasoning 2020: 39-54
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Daniel Garijo, Agnieszka Lawrynowicz:
Proceedings of the EKAW 2020 Posters and Demonstrations Session co-located with 22nd International Conference on Knowledge Engineering and Knowledge Management (EKAW 2020), Globally online & Bozen-Bolzano, Italy, September 17, 2020. CEUR Workshop Proceedings 2751, CEUR-WS.org 2020 [contents]
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  - journals/corr/abs-2003-13084
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Daniel Garijo, María Poveda-Villalón:
Best Practices for Implementing FAIR Vocabularies and Ontologies on the Web. CoRR abs/2003.13084 (2020)
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Filip Ilievski, Daniel Garijo, Hans Chalupsky, Naren Teja Divvala, Yixiang Yao, Craig Milo Rogers, Ronpeng Li, Jun Liu, Amandeep Singh, Daniel Schwabe, Pedro A. Szekely:
KGTK: A Toolkit for Large Knowledge Graph Manipulation and Analysis. CoRR abs/2006.00088 (2020)
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  - journals/corr/abs-2007-09206
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Daniel Garijo, Maximiliano Osorio:
OBA: An Ontology-Based Framework for Creating REST APIs for Knowledge Graphs. CoRR abs/2007.09206 (2020)
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  - journals/corr/abs-2009-10263
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Juan Carrillo, Daniel Garijo, Mark Crowley, Rober Carrillo, Yolanda Gil, Katherine Borda:
Semantic Workflows and Machine Learning for the Assessment of Carbon Storage by Urban Trees. CoRR abs/2009.10263 (2020)
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Alain Monteil, Alejandra N. González-Beltrán, Alexandros Ioannidis, Alice Allen, Allen Lee, Anita E. Bandrowski, Bruce E. Wilson, Bryce D. Mecum, Caifan Du, Carly Robinson, Daniel Garijo, Daniel S. Katz, David Long, Genevieve Milliken, Hervé Ménager, Jessica Hausman, Jurriaan H. Spaaks, Katrina Fenlon, Kristin Vanderbilt, Lorraine J. Hwang, Lynn Davis, Martin Fenner, Michael R. Crusoe, Michael Hucka, Mingfang Wu, Neil P. Chue Hong, Peter J. Teuben, Shelley Stall, Stephan Druskat, Ted Carnevale, Thomas Morrell:
Nine Best Practices for Research Software Registries and Repositories: A Concise Guide. CoRR abs/2012.13117 (2020)

2010 – 2019

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2019
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Ahmad Alobaid, Daniel Garijo, María Poveda-Villalón, Idafen Santana-Pérez, Alba Fernández-Izquierdo, Óscar Corcho:
Automating ontology engineering support activities with OnToology. J. Web Semant. 57 (2019)
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Allen Mao, Daniel Garijo, Shobeir Fakhraei:
SoMEF: A Framework for Capturing Scientific Software Metadata from its Documentation. IEEE BigData 2019: 3032-3037
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Daniel Garijo, Maximiliano Osorio, Deborah Khider, Varun Ratnakar, Yolanda Gil:
OKG-Soft: An Open Knowledge Graph with Machine Readable Scientific Software Metadata. eScience 2019: 349-358
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Milan Markovic, Daniel Garijo, Peter Edwards, Wamberto Vasconcelos:
Semantic Modelling of Plans and Execution Traces for Enhancing Transparency of IoT Systems. IoTSMS 2019: 110-115
[c41]
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Daniel Garijo, Deborah Khider, Varun Ratnakar, Yolanda Gil, Ewa Deelman, Rafael Ferreira da Silva, Craig A. Knoblock, Yao-Yi Chiang, Minh Pham, Jay Pujara, Binh Vu, Dan Feldman, Rajiv Mayani, Kelly M. Cobourn, Christopher J. Duffy, Armen R. Kemanian, Lele Shu, Vipin Kumar, Ankush Khandelwal, Kshitij Tayal, Scott D. Peckham, Maria Stoica, Anna Dabrowski, Daniel Hardesty-Lewis, Suzanne A. Pierce:
An intelligent interface for integrating climate, hydrology, agriculture, and socioeconomic models. IUI Companion 2019: 111-112
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Yolanda Gil, James Honaker, Shikhar Gupta, Yibo Ma, Vito D'Orazio, Daniel Garijo, Shruti Gadewar, Qifan Yang, Neda Jahanshad:
Towards human-guided machine learning. IUI 2019: 614-624
[c39]
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Juan Manuel Carrillo Garcia, Daniel Garijo, Mark Crowley, Rober Carrillo, Yolanda Gil, Katherine Borda:
Semantic Workflows and Machine Learning for the Assessment of Carbon Storage by Urban Trees. SciKnow@K-CAP 2019: 1-6
[c38]
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Milan Markovic, Daniel Garijo, Peter Edwards:
Linking Abstract Plans of Scientific Experiments to their Corresponding Execution Traces (short paper). SciKnow@K-CAP 2019: 7-10
[c37]
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Daniel Garijo, Pedro A. Szekely:
WDPlus: Leveraging Wikidata to Link and Extend Tabular Data (short paper). SciKnow@K-CAP 2019: 37-39
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Pedro A. Szekely, Daniel Garijo, Divij Bhatia, Jiasheng Wu, Yixiang Yao, Jay Pujara:
T2WML: Table To Wikidata Mapping Language. K-CAP 2019: 267-270
[c35]
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Arunima Srivastava, Ravali Adusumilli, Hunter Boyce, Daniel Garijo, Varun Ratnakar, Rajiv Mayani, Thomas Yu, Raghu Machiraju, Yolanda Gil, Parag Mallick:
Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility. PSB 2019: 208-219
[c34]
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Pedro A. Szekely, Daniel Garijo, Jay Pujara, Divij Bhatia, Jiasheng Wu:
T2WML: A Cell-Based Language to Map Tables into Wikidata Records. ISWC (Satellites) 2019: 45-48
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Daniel Garijo, Shobeir Fakhraei, Varun Ratnakar, Qifan Yang, Hanna Endrias, Yibo Ma, Regina Wang, Michael Bornstein, Joanna Bright, Yolanda Gil, Neda Jahanshad:
Towards Automated Hypothesis Testing in Neuroscience. Poly/DMAH@VLDB 2019: 249-257
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Daniel Garijo, Milan Markovic, Paul Groth, Idafen Santana-Pérez, Khalid Belhajjame:
Proceedings of the Third International Workshop on Capturing Scientific Knowledge co-located with the 10th International Conference on Knowledge Capture (K-CAP 2019), Marina del Rey, California , November 19th, 2019. CEUR Workshop Proceedings 2526, CEUR-WS.org 2019 [contents]
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Julien Emile-Geay, Deborah Khider, Daniel Garijo, Nicholas McKay, Yolanda Gil, Varun Ratnakar, Elizabeth Bradley:
The Linked Earth Ontology: A Modular, Extensible Representation of Open Paleoclimate Data. Zenodo, 2019
2018
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Lucas Augusto M. C. Carvalho, Daniel Garijo, Claudia Bauzer Medeiros, Yolanda Gil:
Semantic Software Metadata for Workflow Exploration and Evolution. eScience 2018: 431-441
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  - conf/webi/CheongGCG18
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Chin Wang Cheong, Daniel Garijo, Kwok-Wai Cheung, Yolanda Gil:
PSM-Flow: Probabilistic Subgraph Mining for Discovering Reusable Fragments in Workflows. WI 2018: 166-173
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Daniel Garijo, Natalia Villanueva-Rosales, Tobias Kuhn, Tomi Kauppinen, Michel Dumontier:
Proceedings of the Second Workshop on Enabling Open Semantic Science co-located with 17th International Semantic Web Conference, SemSci@ISWC 2018, Monterey, California, USA, October 8-12th, 2018. CEUR Workshop Proceedings 2184, CEUR-WS.org 2018 [contents]
2017
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Daniel Garijo:
AI buzzwords explained: scientific workflows. AI Matters 3(1): 4-8 (2017)
[j6]
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  - journals/dagstuhl-manifestos/AllenABCCCCCGGG17
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Alice Allen, Cecilia R. Aragon, Christoph Becker, Jeffrey C. Carver, Andrei Chis, Benoît Combemale, Mike Croucher, Kevin Crowston, Daniel Garijo, Ashish Gehani, Carole A. Goble, Robert Haines, Robert Hirschfeld, James Howison, Kathryn D. Huff, Caroline Jay, Daniel S. Katz, Claude Kirchner, Katie Kuksenok, Ralf Lämmel, Oscar Nierstrasz, Matthew J. Turk, Rob van Nieuwpoort, Matthew Vaughn, Jurgen J. Vinju:
Engineering Academic Software (Dagstuhl Perspectives Workshop 16252). Dagstuhl Manifestos 6(1): 1-20 (2017)
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Daniel Garijo, Yolanda Gil, Óscar Corcho:
Abstract, link, publish, exploit: An end to end framework for workflow sharing. Future Gener. Comput. Syst. 75: 271-283 (2017)
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Janne Parkkila, Filip Radulovic, Daniel Garijo, María Poveda-Villalón, Jouni Ikonen, Jari Porras, Asunción Gómez-Pérez:
An ontology for videogame interoperability. Multim. Tools Appl. 76(4): 4981-5000 (2017)
[c30]
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Yolanda Gil, Daniel Garijo, Varun Ratnakar, Rajiv Mayani, Ravali Adusumilli, Hunter Boyce, Arunima Srivastava, Parag Mallick:
Towards Continuous Scientific Data Analysis and Hypothesis Evolution. AAAI 2017: 4406-4414
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Yolanda Gil, Daniel Garijo:
Towards Automating Data Narratives. IUI 2017: 565-576
[c28]
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Lucas A. M. C. Carvalho, Regina Wang, Yolanda Gil, Daniel Garijo:
NiW: Converting Notebooks into Workflows to Capture Dataflow and Provenance. K-CAP Workshops 2017: 12-16
[c27]
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Yolanda Gil, Daniel Garijo, Margaret Knoblock, Alyssa Deng, Ravali Adusumilli, Varun Ratnakar, Parag Mallick:
Improving Publication and Reproducibility of Computational Experiments through Workflow Abstractions. K-CAP Workshops 2017: 17-25
[c26]
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Lucas Augusto M. C. Carvalho, Daniel Garijo, Bakinam T. Essawy, Claudia Bauzer Medeiros, Yolanda Gil:
Requirements for Facilitating the Continuous Creation of Scientific Workflow Variants. K-CAP Workshops 2017: 32-39
[c25]
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Daniel Garijo, Yolanda Gil, Varun Ratnakar:
The DISK Hypothesis Ontology: Capturing Hypothesis Evolution for Automated Discovery. K-CAP Workshops 2017: 40-46
[c24]
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Mihyun Jang, Tejal Patted, Yolanda Gil, Daniel Garijo, Varun Ratnakar, Jie Ji, Prince Wang, Aggie McMahon, Paul M. Thompson, Neda Jahanshad:
Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. SemSci@ISWC 2017: 63-70
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Daniel Garijo:
WIDOCO: A Wizard for Documenting Ontologies. ISWC (2) 2017: 94-102
[c22]
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Yolanda Gil, Daniel Garijo, Varun Ratnakar, Deborah Khider, Julien Emile-Geay, Nicholas McKay:
A Controlled Crowdsourcing Approach for Practical Ontology Extensions and Metadata Annotations. ISWC (2) 2017: 231-246
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Óscar Corcho, Krzysztof Janowicz, Giuseppe Rizzo, Ilaria Tiddi, Daniel Garijo:
Proceedings of the Knowledge Capture Conference, K-CAP 2017, Austin, TX, USA, December 4-6, 2017. ACM 2017, ISBN 978-1-4503-5553-7 [contents]
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Daniel Garijo, Willem Robert van Hage, Tomi Kauppinen, Tobias Kuhn, Jun Zhao:
Proceedings of the First Workshop on Enabling Open Semantic Science co-located with 16th International Semantic Web Conference (ISWC 2017), Vienna, Austria, October 21st, 2017. CEUR Workshop Proceedings 1931, CEUR-WS.org 2017 [contents]
2016
[c21]
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Yolanda Gil, Daniel Garijo, Saurabh Mishra, Varun Ratnakar:
OntoSoft: A distributed semantic registry for scientific software. eScience 2016: 331-336
2015
[b1]
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Daniel Garijo:
Mining Abstractions in Scientific Workows. Technical University of Madrid, Spain, 2015
[j3]
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Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina M. Hettne, Raúl Palma, Eleni Mina, Óscar Corcho, José Manuél Gómez-Pérez, Sean Bechhofer, Graham Klyne, Carole A. Goble:
Using a suite of ontologies for preserving workflow-centric research objects. J. Web Semant. 32: 16-42 (2015)
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Ahmad Alobaid, Daniel Garijo, María Poveda-Villalón, Idafen Santana-Pérez, Óscar Corcho:
OnToology, a tool for collaborative development of ontologies. ICBO 2015
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Yolanda Gil, Varun Ratnakar, Daniel Garijo:
OntoSoft: Capturing Scientific Software Metadata. K-CAP 2015: 32:1-32:4
[c18]
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Daniel Garijo, Nandana Mihindukulasooriya, Óscar Corcho:
LDP4ROs: Managing Research Objects with the W3C Linked Data Platform. WWW (Companion Volume) 2015: 1057-1058
2014
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Daniel Garijo, Pinar Alper, Khalid Belhajjame, Óscar Corcho, Yolanda Gil, Carole A. Goble:
Common motifs in scientific workflows: An empirical analysis. Future Gener. Comput. Syst. 36: 338-351 (2014)
[c17]
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Daniel Garijo, Óscar Corcho, Yolanda Gil, Meredith N. Braskie, Derrek P. Hibar, Xue Hua, Neda Jahanshad, Paul M. Thompson, Arthur W. Toga:
Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Users. eScience 2014: 239-246
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Daniel Garijo, Óscar Corcho, Yolanda Gil, Boris A. Gutman, Ivo D. Dinov, Paul M. Thompson, Arthur W. Toga:
FragFlow Automated Fragment Detection in Scientific Workflows. eScience 2014: 281-289
[c15]
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Daniel Garijo, Yolanda Gil, Andreas Harth:
Challenges for Provenance Analytics Over Geospatial Data. IPAW 2014: 261-263
[c14]
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Angela Dappert, Rudolf Mayer, Stefan Pröll, Andreas Rauber, Kevin R. Page, Raúl Palma, Daniel Garijo:
Preserving Data to Preserving Research: Curation of Process and Context. iPRES 2014
[c13]
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Daniel Garijo, Yolanda Gil, Óscar Corcho:
Towards workflow ecosystems through semantic and standard representations. WORKS@SC 2014: 94-104
[c12]
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Kevin R. Page, Raúl Palma, Piotr Holubowicz, Graham Klyne, Stian Soiland-Reyes, Daniel Garijo, Khalid Belhajjame, Rudolf Mayer:
Research Objects for Audio Processing: Capturing Semantics for Reproducibility. Semantic Audio 2014
[i1]
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Khalid Belhajjame, Jun Zhao, Daniel Garijo, Kristina M. Hettne, Raúl Palma, Óscar Corcho, José Manuél Gómez-Pérez, Sean Bechhofer, Graham Klyne, Carole A. Goble:
The Research Object Suite of Ontologies: Sharing and Exchanging Research Data and Methods on the Open Web. CoRR abs/1401.4307 (2014)
2013
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Ghislain Auguste Atemezing, Óscar Corcho, Daniel Garijo, Jose Mora, María Poveda-Villalón, Pablo Rozas, Daniel Vila-Suero, Boris Villazón-Terrazas:
Transforming meteorological data into Linked Data. Semantic Web 4(3): 285-290 (2013)
[c11]
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Khalid Belhajjame, Jun Zhao, Daniel Garijo, Aleix Garrido, Stian Soiland-Reyes, Pinar Alper, Óscar Corcho:
A workflow PROV-corpus based on taverna and wings. EDBT/ICDT Workshops 2013: 331-332
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Rudolf Mayer, Stefan Pröll, Andreas Rauber, Raúl Palma, Daniel Garijo:
From Preserving Data to Preserving Research: Curation of Process and Context. TPDL 2013: 490-491
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Daniel Garijo, Óscar Corcho, Yolanda Gil:
Detecting common scientific workflow fragments using templates and execution provenance. K-CAP 2013: 33-40
[c8]
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  - conf/sc/HollGBZGOG09
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Sonja Holl, Daniel Garijo, Khalid Belhajjame, Olav Zimmermann, Renato De Giovanni, Matthias Obst, Carole A. Goble:
On specifying and sharing scientific workflow optimization results using research objects. WORKS@SC 2013: 28-37
2012
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Daniel Garijo, Pinar Alper, Khalid Belhajjame, Óscar Corcho, Yolanda Gil, Carole A. Goble:
Common motifs in scientific workflows: An empirical analysis. eScience 2012: 1-8
[c6]
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Khalid Belhajjame, Óscar Corcho, Daniel Garijo, Jun Zhao, Paolo Missier, David R. Newman, Raúl Palma, Sean Bechhofer, Esteban García-Cuesta, José Manuél Gómez-Pérez, Graham Klyne, Kevin R. Page, Marco Roos, José Enrique Ruiz, Stian Soiland-Reyes, Lourdes Verdes-Montenegro, David De Roure, Carole A. Goble:
Workflow-Centric Research Objects: A First Class Citizen in the Scholarly Discourse. SePublica@ESWC 2012: 1-12
[c5]
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Daniel Garijo, Yolanda Gil:
Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data. LISC@ISWC 2012
2011
[c4]
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Kai Eckert, Daniel Garijo, Michael Panzer:
Extending DCAM for Metadata Provenance. Dublin Core Conference 2011: 12-25
[c3]
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Kai Eckert, Daniel Garijo, Michael Panzer, Omer Percin:
Metadata Provenance: Dublin Core on the Next Level. Dublin Core Conference 2011: 192-193
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Daniel Garijo, Boris Villazón-Terrazas, Óscar Corcho:
A provenance-aware Linked Data application for trip management and organization. I-SEMANTICS 2011: 224-226
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Daniel Garijo, Yolanda Gil:
A new approach for publishing workflows: abstractions, standards, and linked data. WORKS@SC 2011: 47-56

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