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4th ISBRA 2008: Atlanta, GA, USA
- Ion I. Mandoiu
, Raj Sunderraman, Alexander Zelikovsky
Bioinformatics Research and Applications, Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings. Lecture Notes in Computer Science 4983, Springer 2008, ISBN 978-3-540-79449-3 - Dan L. Nicolae
Invited Keynote Talk: Set-Level Analyses for Genome-Wide Association Data. 1 - Mariana Kant, Maurice LeBon, David Sankoff:
Hierarchical Clustering Using Constraints. 2-13 - Mukul S. Bansal
The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI Based Local Searches. 14-25 - Xintao Wei, Lenore Cowen, Carla E. Brodley, Arthur Brady
A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes. 26-37 - Tingting Zhou, Keith C. C. Chan
An Approach for Determining Evolutionary Distance in Network-Based Phylogenetic Analysis. 38-49 - Ankit Agrawal
Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences. 50-61 - Ankit Agrawal
Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition. 62-73 - Todd J. Treangen, Aaron E. Darling, Mark A. Ragan
Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats. 74-86 - David Hoksza
Improved Alignment of Protein Sequences Based on Common Parts. 87-99 - Nikita Arnold, Tema Fridman, Robert M. Day, Andrey Gorin:
Invited Keynote Talk: Computing P-Values for Peptide Identifications in Mass Spectrometry. 100-109 - Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu:
PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. 110-121 - Leonid Zaslavsky, Tatiana A. Tatusova:
Accelerating the Neighbor-Joining Algorithm Using the Adaptive Bucket Data Structure. 122-133 - Qian Zhu, Zaky Adam, Vicky Choi, David Sankoff:
Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution. 134-145 - David S. Campo
Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure. 146-158 - Kelly Westbrooks, Irina Astrovskaya, David S. Campo
HCV Quasispecies Assembly Using Network Flows. 159-170 - Matthew A. Goto, Eric J. Schwabe:
A Dynamic Programming Algorithm for De Novo Peptide Sequencing with Variable Scoring. 171-182 - Andrew S. Allen
Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies. 183 - Eyad Almasri, Peter E. Larsen, Guanrao Chen, Yang Dai:
Incorporating Literature Knowledge in Bayesian Network for Inferring Gene Networks with Gene Expression Data. 184-195 - Chen Wang
Integrative Network Component Analysis for Regulatory Network Reconstruction. 196-207 - Min Li, Jianxin Wang, Jianer Chen:
A Graph-Theoretic Method for Mining Overlapping Functional Modules in Protein Interaction Networks. 208-219 - Alexandre P. Francisco
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph. 220-231 - Stefan Gremalschi, Gulsah Altun:
Mean Squared Residue Based Biclustering Algorithms. 232-243 - Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins
Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information. 244-255 - Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution. 256-267 - Yongjin Park, Stanley Shackney, Russell Schwartz
Network-Based Inference of Cancer Progression from Microarray Data. 268-279 - Kenneth H. Buetow:
Invited Keynote Talk: Quiet Revolution: Connectivity in the Cancer Research Community. 280 - Gordana Derado, Kichun Sky Lee, Orietta Nicolis, F. DuBois Bowman, Mary Newell, Fabrizio F. Rugger, Brani Vidakovic:
Wavelet-Based 3-D Multifractal Spectrum with Applications in Breast MRI Images. 281-292 - Qingguo Zeng, Yunmei Chen:
Accurate Inverse Consistent Non-rigid Image Registration and Its Application on Automatic Re-contouring. 293-304 - Matthew Eavenson, Maciej Janik, Shravya Nimmagadda, John A. Miller
GlycoBrowser: A Tool for Contextual Visualization of Biological Data and Pathways Using Ontologies. 305-316 - Kejie Li, Reazur Rahman, Aditi Gupta, Prasad Siddavatam, Michael Gribskov
Pattern Matching in RNA Structures. 317-330 - Wei-Mou Zheng:
The Use of a Conformational Alphabet for Fast Alignment of Protein Structures. 331-342 - Andrew Leaver-Fay, Jack Snoeyink
On-the-Fly Rotamer Pair Energy Evaluation in Protein Design. 343-354 - James Lara, Zoya Dimitrova, Yuri Khudyakov:
Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling. 355-366 - Shibin Qiu, Terran Lane:
Multiple Kernel Support Vector Regression for siRNA Efficacy Prediction. 367-378 - Wei Zhong, Rick Chow, Richard Stolz, Jieyue He, Marsha Dowell:
Hierarchical Clustering Support Vector Machines for Classifying Type-2 Diabetes Patients. 379-389 - Majid Masso
Computational Mutagenesis of E. coliLacRepressor: Insight into Structure-Function Relationships and Accurate Prediction of Mutant Activity. 390-401 - Rafael Ördög, Vince Grolmusz
Evaluating Genetic Algorithms in Protein-Ligand Docking. 402-413 - Huimin Geng, Hesham H. Ali, Wing C. Chan:
A Hidden Markov Model Approach for Prediction of Genomic Alterations from Gene Expression Profiling. 414-425 - Qihua Tan
Evolutionary Algorithm for Feature Subset Selection in Predicting Tumor Outcomes Using Microarray Data. 426-433 - Peter E. Larsen, Eyad Almasri, Guanrao Chen, Yang Dai:
Incorporating Knowledge of Topology Improves Reconstruction of Interaction Networks from Microarray Data. 434-443 - Shin-Lian Lo, Kwok-Leung Tsui
Invited Keynote Talk: Data Mining and Statistical Methods for Analyzing Microarray Experiments. 444 - Anna-Lena Lamprecht, Tiziana Margaria
Seven Variations of an Alignment Workflow - An Illustration of Agile Process Design and Management in Bio-jETI. 445-456 - David Stotts, Keith L. Lee, Ivan Rusyn
Supporting Computational Systems Science: Genomic Analysis Tool Federations Using Aspects and AOP. 457-468 - Alexandra Martínez, Joachim Hammer, Sanjay Ranka
BioDQ: Data Quality Estimation and Management for Genomics Databases. 469-480 - Juntao Li, Jianhua Liu, Karuturi R. Krishna Murthy:
Stepped Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis. 481-491 - Dimitris N. Politis:
Bagging Multiple Comparisons from Microarray Data. 492-503 - Shandar Ahmad
Human Blood-Brain Differential Gene-Expression Correlates with Dipeptide Frequency of Gene Products. 504-508
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