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Mary Yang
Mary Qu Yang
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2020 – today
- 2021
- [c44]Wenjuan Zhang, William Yang, John Talburt, Sherman Morton Weissman, Mary Qu Yang:
Missing Value Recovery for Single Cell RNA Sequencing Data. CSCI 2021: 344-348
2010 – 2019
- 2019
- [j44]Mary Qu Yang, Sherman Morton Weissman, William Yang, Jialing Zhang, Allon Canaan, Renchu Guan
:
Correction to: MISC: missing imputation for single-cell RNA sequencing data. BMC Syst. Biol. 13(1): 13:1 (2019) - [j43]Renchu Guan
Feature space learning model. J. Ambient Intell. Humaniz. Comput. 10(5): 2029-2040 (2019) - [j42]Pengfei Cao, Zhongyi Yang, Liang Sun, Yanchun Liang, Mary Qu Yang, Renchu Guan
Image Captioning with Bidirectional Semantic Attention-Based Guiding of Long Short-Term Memory. Neural Process. Lett. 50(1): 103-119 (2019) - [c43]Yifan Zhang, William Yang, Jun S. Liu, Mary Qu Yang:
Characterizing Mutually Exclusive Driver Mutations in Pan-Cancer. BIBM 2019: 2013-2020 - 2018
- [j41]Dan Li, Mary Qu Yang:
Correction to: Identification and characterization of conserved lncRNAs in human and rat brain. BMC Bioinform. 19(1): 181:1 (2018) - [j40]Mengjie Guo, Sicheng Lu, Hongming Huang, Yaohui Wang, Mary Qu Yang, Ye Yang
Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer. BMC Syst. Biol. 12(7): 11-17 (2018) - [j39]Dan Li, William Yang, Carolyn Arthur, Jun S. Liu
Systems biology analysis reveals new insights into invasive lung cancer. BMC Syst. Biol. 12(7): 47-53 (2018) - [j38]Mary Qu Yang, Sherman Morton Weissman, William Yang, Jialing Zhang, Allon Canaan, Renchu Guan
MISC: missing imputation for single-cell RNA sequencing data. BMC Syst. Biol. 12(7): 55-63 (2018) - [j37]Steven B. Cogill, Anand K. Srivastava, Mary Qu Yang, Liangjiang Wang:
Co-expression of long non-coding RNAs and autism risk genes in the developing human brain. BMC Syst. Biol. 12(7): 65-73 (2018) - [j36]Guannan He, Yanchun Liang, Yan Chen, William Yang, Jun S. Liu
A hotspots analysis-relation discovery representation model for revealing diabetes mellitus and obesity. BMC Syst. Biol. 12(7): 75-85 (2018) - [j35]Ling Hu, Rong Zhang, Qiong Yuan, Yinping Gao, Mary Qu Yang, Chunxiang Zhang, Jiankun Huang, Yufei Sun, William Yang, Jack Y. Yang, Zhen-li Min, Jing Cheng, Youping Deng
The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by Aβ25-35 triggered in SH-SY5Y cell. BMC Syst. Biol. 12(7): 119:1-119:10 (2018) - [j34]Xixun Lin, Yanchun Liang, Limin Wang, Xu Wang, Mary Qu Yang, Renchu Guan
A Knowledge Base Completion Model Based on Path Feature Learning. Int. J. Comput. Commun. Control 13(1): 71-82 (2018) - [j33]Wenbing Zhao
Correction to: Dependability enhancing mechanisms for integrated clinical environments. J. Supercomput. 74(7): 3486-3487 (2018) - 2017
- [j32]Dan Li, Mary Qu Yang:
Identification and characterization of conserved lncRNAs in human and rat brain. BMC Bioinform. 18(14): 31-38 (2017) - [j31]Wenbing Zhao
Dependability enhancing mechanisms for integrated clinical environments. J. Supercomput. 73(10): 4207-4220 (2017) - [c42]Hao Zhang, Mary Qu Yang, Xiaoyue Feng, William Yang, Weida Tong, Renchu Guan:
Protein-Protein Interaction Extraction Using Attention-Based Convolution Neural Networks. BCB 2017: 770-771 - [c41]William Yang, Sherman Morton Weissman, Renchu Guan
Invited talk: Developing deep multi-source intelligent learning that facilitates the advancement of single cell genomics research. BIBM 2017: 750-753 - [c40]Dan Li, William Yang, Yifan Zhang, Jack Y. Yang, Weida Tong, Renchu Guan
Comprehensive analysis of pulmonary adenocarcinoma in situ (AIS) revealed new insights into lung cancer progression. BIBM 2017: 792-797 - [c39]Yifan Zhang, William Yang, Dan Li, Jack Y. Yang, Renchu Guan
Toward precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis. BIBM 2017: 830-835 - [c38]Guannan He, Yanchun Liang, Yan Chen, William Yang, Jun S. Liu
Relation discovery and hotspots analysis on diabetes mellitus and obesity with representation model. BIBM 2017: 952-957 - 2016
- [j30]Wenbing Zhao, William Yang, Honglei Zhang, Jack Y. Yang, Xiong Luo, Yueqin Zhu, Mary Yang, Chaomin Luo
High-throughput state-machine replication using software transactional memory. J. Supercomput. 72(11): 4379-4398 (2016) - [c37]Chong He, Changbo Zhao, Guo-Zheng Li, Wei Zhu, William Yang, Mary Qu Yang:
A hybrid iterative approach for microarray missing value estimation. BIBM 2016: 1350-1352 - [c36]Li Huang, Shixing Yan, Jiamin Yuan, Zhiya Zuo
Comparing of feature selection and classification methods on report-based subhealth data. BIBM 2016: 1356-1358 - [c35]Haiqing Li, Guo-Zheng Li, William Yang, Ying Chen, Xiaoxin Zhu, Mary Qu Yang:
Prediction of the efficacy of Wuji Pills by machine learning methods. BIBM 2016: 1372-1374 - [c34]Jiamin Yuan, Jiachang Chen, Li Huang, Fuping Xu, Mary Qu Yang, Shixing Yan, Guo-Zheng Li, Zhimin Yang:
Visualized analysis of incomplete TCM meridian conductance data. BIBM 2016: 1406-1408 - [c33]Wenbing Zhao, Mamdouh Babi, William Yang, Xiong Luo, Yueqin Zhu, Jack Y. Yang, Chaomin Luo, Mary Yang:
Byzantine fault tolerance for collaborative editing with commutative operations. EIT 2016: 246-251 - 2015
- [c32]Hong Zhou, Joseph Manthey, Ekaterina Lioutikova, Mary Qu Yang, William Yang, Kenji Yoshigoe, Hong Wang:
The upregulation of Myb and Peg3 may mediate EGCG inhibition effect on mouse lung adenocarcinoma. BIBM 2015: 1532-1535 - [c31]Chad Hayden, Dan Li, Kenji Yoshigoe, Mary Yang:
Developing automated pipeline for identifying disease-related genomic variants. BIBM 2015: 1789 - 2014
- [j29]Jack Y. Yang, A. Keith Dunker, Jun S. Liu
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinform. 15(S-17): I1 (2014) - [j28]Mary Qu Yang, Laura Elnitski
Orthology-driven mapping of bidirectional promoters in human and mouse genomes. BMC Bioinform. 15(S-17): S1 (2014) - [j27]William Yang, Kenji Yoshigoe, Xiang Qin, Jun S. Liu
Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinform. 15(S-17): S2 (2014) - [j26]Zhongxue Chen
A new statistical approach to combining p-values using gamma distribution and its application to genome-wide association study. BMC Bioinform. 15(S-17): S3 (2014) - [j25]Chang Liu, Lili Lu, Quan Kong, Yan Li, Haihua Wu, William Yang, Shandan Xu, Xinyu Yang, Xiaolei Song, Jack Y. Yang, Mary Qu Yang, Youping Deng:
Developing discriminate model and comparative analysis of differentially expressed genes and pathways for bloodstream samples of diabetes mellitus type 2. BMC Bioinform. 15(S-17): S5 (2014) - 2010
- [j24]Liangjiang Wang, Caiyan Huang, Mary Qu Yang, Jack Y. Yang:
BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features. BMC Syst. Biol. 4(S-1): S3 (2010) - [j23]Xiaolong Zhang, Ting Wang, Huiping Luo, Jack Y. Yang, Youping Deng, Jinshan Tang
3D Protein structure prediction with genetic tabu search algorithm. BMC Syst. Biol. 4(S-1): S6 (2010) - [c30]Guo-Zheng Li, Mingyu You, Lei Ge, Jack Y. Yang, Mary Qu Yang:
Feature selection for semi-supervised multi-label learning with application to gene function analysis. BCB 2010: 354-357
2000 – 2009
- 2009
- [j22]Mary Qu Yang, Jack Y. Yang:
Lecture notes: 2010 and beyond, the decade of high-performance computing for the next-generation sequence analysis. Int. J. Comput. Biol. Drug Des. 2(2): 204-206 (2009) - [j21]Mary Qu Yang, Andrzej Niemierko, Jack Y. Yang, Yufang Jin
Promoting inter/multidisciplinary education and research in bioinformatics, systems biology and intelligent computing. Int. J. Comput. Biol. Drug Des. 2(3): 207-220 (2009) - [j20]Xue-Qiang Zeng, Guo-Zheng Li
Irrelevant gene elimination for Partial Least Squares based Dimension Reduction by using feature probes. Int. J. Data Min. Bioinform. 3(1): 85-103 (2009) - [j19]Ying Chen, Nazeih M. Botros, Mary Qu Yang:
Editorial review: engineering modelling and intelligent computing are synergistic in translational medicine research. Int. J. Funct. Informatics Pers. Medicine 2(4): 341-345 (2009) - [j18]Mingyu You, Guo-Zheng Li
An Enhanced Lipschitz Embedding Classifier for Multi-Emotion Speech Analysis. Int. J. Pattern Recognit. Artif. Intell. 23(8): 1685-1700 (2009) - [j17]Guo-Zheng Li
Combining support vector regression with feature selection for multivariate calibration. Neural Comput. Appl. 18(7): 813-820 (2009) - [c29]Su-Fen Chen, Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
Redundant Gene Selection Based on Particle Swarm Optimization. IJCBS 2009: 10-16 - [c28]Kaiqi Xiong, Sang C. Suh, Mary Qu Yang, Jack Y. Yang, Hamid R. Arabnia
Next Generation Sequence Analysis Using Genetic Algorithms on Multi-core Technology. IJCBS 2009: 190-191 - [c27]Mary Qu Yang, Sang C. Suh, Kaiqi Xiong, Jack Y. Yang, Hamid R. Arabnia:
The Impact of Supercomputing in the Next Generation Sequencing Data Mining. PDPTA 2009: 532 - [e9]Hamid R. Arabnia, Mary Qu Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2009, July 13-16, 2009, Las Vegas Nevada, USA, 2 Volumes. CSREA Press 2009, ISBN 1-60132-095-7 [contents] - 2008
- [j16]Frank Emmert-Streib
Preface. Appl. Artif. Intell. 22(7&8): 617-618 (2008) - [j15]Guo-Zheng Li
Asymmetric bagging and feature selection for activities prediction of drug molecules. BMC Bioinform. 9(S-6) (2008) - [j14]Mary Qu Yang, James Taylor, Laura Elnitski
Comparative analyses of bidirectional promoters in vertebrates. BMC Bioinform. 9(S-6) (2008) - [j13]Xue-Qiang Zeng, Guo-Zheng Li
Dimension reduction with redundant gene elimination for tumor classification. BMC Bioinform. 9(S-6) (2008) - [j12]Guo-Zheng Li, Jack Y. Yang, Wen-Cong Lu, Dan Li, Mary Qu Yang:
Improving prediction accuracy of drug activities by utilising unlabelled instances with feature selection. Int. J. Comput. Biol. Drug Des. 1(1): 1-13 (2008) - [j11]Pan Du, Simon M. Lin, Mary Qu Yang, Jack Y. Yang:
2009 and beyond: the decade of personalised medicine. Int. J. Comput. Biol. Drug Des. 1(4): 329-333 (2008) - [j10]Tian-Yu Liu, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
Feature selection for the imbalanced QSAR problems by using EasyEnsemble. Int. J. Comput. Biol. Drug Des. 1(4): 334-346 (2008) - [j9]Jack Y. Yang, Mary Qu Yang:
Identification of Intrinsically Unstructured Proteins using hierarchical classifier. Int. J. Data Min. Bioinform. 2(2): 121-133 (2008) - [j8]Jack Y. Yang, Mary Qu Yang:
Transforming medicine: functional informatics, drug design, and personalised healthcare. Int. J. Funct. Informatics Pers. Medicine 1(1): 1-7 (2008) - [j7]Walker H. Land Jr., John J. Heine, Thomas Raway, Alda Mizaku, Nataliya Kovalchuk, Jack Y. Yang, Mary Qu Yang:
New statistical learning theory paradigms adapted to breast cancer diagnosis/classification using image and non-image clinical data. Int. J. Funct. Informatics Pers. Medicine 1(2): 111-139 (2008) - [j6]Yuhai Liu, Guo-Zheng Li, Hong-Yu Zhang, Mary Qu Yang, Jack Y. Yang:
Feature selection for gene function prediction using multi-labelled lazy learning. Int. J. Funct. Informatics Pers. Medicine 1(3): 223-233 (2008) - [j5]Nazeih M. Botros, Ying Chen, Mary Qu Yang:
Functional informatics and personalised medicine are key synergistic components of translational medicine. Int. J. Funct. Informatics Pers. Medicine 1(4): 329-334 (2008) - [j4]Mingyu You, Guo-Zheng Li, Xue-Qiang Zeng, Lei Ge, Lijuan Bi, Suying Huang, Mary Qu Yang, Jack Y. Yang:
A Personalized Traditional Chinese Medicine System in the case of Cai's gynecology. Int. J. Funct. Informatics Pers. Medicine 1(4): 419-438 (2008) - [j3]Yuehui Chen, Feng Chen, Jack Y. Yang, Mary Qu Yang:
Ensemble Voting System for Multiclass protein fold Recognition. Int. J. Pattern Recognit. Artif. Intell. 22(4): 747-763 (2008) - [c26]Jens Lichtenberg, Edwin Jacox, Mary Qu Yang, Laura Elnitski, Lonnie R. Welch:
Word-Based Characterization of the Bidirectional Promoters from the Human DNA-Repair Pathway. BIOCOMP 2008: 29-33 - [c25]Yuhai Liu, Guo-Zheng Li, Wenqian Yu, Jianqun Xu, Jack Y. Yang, Mary Qu Yang:
Abnormal Traffic Detection in VoIP by Using Machine Learning Approaches. IC-AI 2008: 295-300 - [c24]Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution. ISBRA 2008: 256-267 - [c23]Jack Y. Yang, Mary Qu Yang, Hamid R. Arabnia:
High Performance Computing and Computational Intelligence: Link to the Translational Medicine and Personalized Healthcare - Banquet Keynote Lecture. PDPTA 2008: 823-825 - [e8]Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2008, July 14-17, 2008, Las Vegas Nevada, USA, 2 Volumes. CSREA Press 2008, ISBN 1-60132-055-8 [contents] - 2007
- [j2]Mary Qu Yang, Jack Y. Yang, Okan K. Ersoy:
Classification of proteins multiple-labelled and single-labelled with protein functional classes. Int. J. Gen. Syst. 36(1): 91-109 (2007) - [j1]Mary Qu Yang, Laura M. Koehly, Laura Elnitski
Comprehensive Annotation of Bidirectional Promoters Identifies Co-Regulation among Breast and Ovarian Cancer Genes. PLoS Comput. Biol. 3(4) (2007) - [c22]Mary Qu Yang, Laura Elnitski
Promoter studies in the human genome: one perspective on an unfinished story. BIBE 2007: 4-6 - [c21]Mary Qu Yang, Jack Y. Yang:
An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine Learning. BIBE 2007: 9-10 - [c20]Yuehui Chen, Xueqin Zhang, Mary Qu Yang, Jack Y. Yang:
Ensemble of Probabilistic Neural Networks for Protein Fold Recognition. BIBE 2007: 66-70 - [c19]Mehdi Pirooznia
An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. BIBE 2007: 187-191 - [c18]Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng:
Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. BIBE 2007: 524-531 - [c17]Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang:
Support Vector Regression with Feature Selection for the Multivariate Calibration of Spectrofluorimetric Determination of Aromatic Amino Acids. BIBE 2007: 842-848 - [c16]Hua-Long Bu
Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor Classification. BIBE 2007: 967-973 - [c15]Guo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang:
Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor Classification. BIBE 2007: 1439-1444 - [c14]Mary Qu Yang, Laura Elnitski:
An Overview of Bidirectional Promoters. BIBE 2007: 1447 - [c13]Mary Qu Yang, Laura Elnitski:
Orthology and Multiple Class Prediction of Functional Elements in the Human Genome. BIOCOMP 2007: 218-228 - [c12]Jack Y. Yang, Mary Qu Yang:
The 2007 World Congress in Computer Science, Computer Engineering, and Applied Computing Invited Banquet Keynote Lecture: Using Bioinformatics and Machine Learning to Predict Potential Malignancies. BIOCOMP 2007: 282-288 - [c11]Jack Y. Yang, Guo-Zheng Li, Li-Xin Liu, Mary Qu Yang:
Classification of Brain Glioma by Using Neural Networks Ensemble with Multi-Task Learning. BIOCOMP 2007: 515-522 - [c10]Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Zuojie Luo, Jianling Li:
Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches. CIBCB 2007: 46-53 - [c9]Guo-Zheng Li, Dan Li, Wen-Cong Lu, Jack Y. Yang, Mary Qu Yang:
Feature Selection for Co-Training: A QSAR Study. IC-AI 2007: 138-146 - [c8]Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang:
Asymmetric Bagging and Feature Selection for Activities Prediction of Drug Molecules. IMSCCS 2007: 108-114 - [c7]Mary Qu Yang, James Taylor, Laura Elnitski:
Rigorous Mapping of Orthologous Bidirectional Promoters in Vertebrates Defines their Evolutionary History. IMSCCS 2007: 115-122 - [c6]Mary Qu Yang, Laura Elnitski:
Invited Talk: A Computational Study of Bidirectional Promoters in the Human Genome. ISBRA 2007: 361-371 - [e7]Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2007, Volume I, June 25-28, 2007, Las Vegas Nevada, USA. CSREA Press 2007, ISBN 1-60132-040-X [contents] - [e6]Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2007, Volume II, June 25-28, 2007, Las Vegas Nevada, USA. CSREA Press 2007, ISBN 1-60132-041-8 [contents] - [e5]Hamid R. Arabnia, Jack Y. Yang, Mary Qu Yang:
Proceedings of the 2007 International Conference on Scientific Computing, CSC 2007, June 25-28, 2007, Las Vegas, Nevada, USA. CSREA Press 2007, ISBN 1-60132-037-X [contents] - [e4]Hamid R. Arabnia, Jack Y. Yang, Mary Qu Yang:
Proceedings of the 2007 International Conference on Genetic and Evolutionary Methods, GEM 2007, June 25-28, 2007, Las Vegas, Nevada, USA. CSREA Press 2007, ISBN 1-60132-038-8 [contents] - [e3]Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
Proceedings of the 2007 International Conference on Artificial Intelligence, ICAI 2007, Volume I, June 25-28, 2007, Las Vegas, Nevada, USA. CSREA Press 2007, ISBN 1-60132-023-X [contents] - [e2]Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
Proceedings of the 2007 International Conference on Artificial Intelligence, ICAI 2007, Volume II, June 25-28, 2007, Las Vegas, Nevada, USA. CSREA Press 2007, ISBN 1-60132-024-8 [contents] - [e1]Hamid R. Arabnia, Matthias Dehmer, Frank Emmert-Streib, Mary Qu Yang:
Proceedings of the 2007 International Conference on Machine Learning; Models, Technologies & Applications, MLMTA 2007, June 25-28, 2007, Las Vegas Nevada, USA. CSREA Press 2007, ISBN 1-60132-027-2 [contents] - 2006
- [c5]Mary Qu Yang, Jack Y. Yang:
IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences. BIBE 2006: 3-11 - [c4]Jack Y. Yang, Mary Qu Yang:
Assessing protein function using a combination of supervised and unsupervised learning. BIBE 2006: 35-44 - [c3]Mary Qu Yang, Jack Y. Yang:
Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure. BIOCOMP 2006: 303-309 - [c2]Jack Y. Yang, Mary Qu Yang:
Learning from Sequences with Determining Correlation between Transmembrane and Protein Disorder. BIOCOMP 2006: 345-351 - 2005
- [p1]Mary Qu Yang, Okan K. Ersoy, Jack Y. Yang:
Sequential bifurcation Approach to Learning protein Functional Classes. Advances in Bioinformatics and Its Applications 2005 - 2003
- [c1]Jack Y. Yang, Mary Qu Yang, Okan K. Ersoy:
Exploring Protein Functional Relationships Using Genomic Information and Data Mining Techniques. ICANN 2003: 1073-1080
Coauthor Index
[j35] [c40] [c39] [j30] [c33] [j29] [j27] [j26] [j25] [j24] [j23] [c30] [j22] [j21] [j20] [j18] [j17] [c29] [c28] [c27] [j15] [j13] [j12] [j11] [j10] [j9] [j8] [j7] [j6] [j4] [j3] [c25] [c24] [c23] [e8] [j2] [c21] [c20] [c19] [c18] [c17] [c16] [c15] [c12] [c11] [c10] [c9] [c8] [e7] [e6] [e5] [e4] [e3] [e2] [c5] [c4] [c3] [c2] [p1] [c1]
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