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Mark A. Ragan
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- affiliation: University of Queensland, Brisbane, Australia
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2010 – 2019
- 2019
- [j31]Guillaume Bernard
, Cheong Xin Chan
Alignment-free inference of hierarchical and reticulate phylogenomic relationships. Briefings Bioinform. 20(2): 426-435 (2019) - 2015
- [j30]Atefeh Taherian Fard
Breast cancer classification: linking molecular mechanisms to disease prognosis. Briefings Bioinform. 16(3): 461-474 (2015) - 2014
- [j29]Stefan Maetschke
Supervised, semi-supervised and unsupervised inference of gene regulatory networks. Briefings Bioinform. 15(2): 195-211 (2014) - [j28]Liam G. Fearnley, Melissa J. Davis
Extracting reaction networks from databases-opening Pandora's box. Briefings Bioinform. 15(6): 973-983 (2014) - [j27]Stefan Maetschke
Characterizing cancer subtypes as attractors of Hopfield networks. Bioinform. 30(9): 1273-1279 (2014) - [j26]Sriganesh Srihari, Piyush B. Madhamshettiwar, Sarah Song, Chao Liu, Peter T. Simpson
Complex-based analysis of dysregulated cellular processes in cancer. BMC Syst. Biol. 8(S-4): S1 (2014) - [j25]Sriganesh Srihari
Evolution and Controllability of CancerNetworks: A Boolean Perspective. IEEE ACM Trans. Comput. Biol. Bioinform. 11(1): 83-94 (2014) - [c9]Liam G. Fearnley, Mark A. Ragan, Lars Keld Nielsen
Towards a Large Integrated Model of Signal Transduction and Gene Regulation Events in Mammalian Cells. BIOINFORMATICS 2014: 117-122 - 2013
- [j24]Sriganesh Srihari
Systematic tracking of dysregulated modules identifies novel genes in cancer. Bioinform. 29(12): 1553-1561 (2013) - [j23]Cheong Xin Chan
Clustering evolving proteins into homologous families. BMC Bioinform. 14: 120 (2013) - [j22]Piyush B. Madhamshettiwar, Stefan Maetschke, Melissa J. Davis
RMaNI: Regulatory Module Network Inference framework. BMC Bioinform. 14(S-16): S14 (2013) - [i1]Sriganesh Srihari, Mark A. Ragan:
Computing Pathways to Systems Biology: Key Contributions of Computational Methods in Pathway Identification. CoRR abs/1304.5565 (2013) - 2012
- [j21]Stefan Maetschke, Martin Simonsen, Melissa J. Davis
Gene Ontology-driven inference of protein-protein interactions using inducers. Bioinform. 28(1): 69-75 (2012) - [j20]Martin Simonsen, Stefan Maetschke, Mark A. Ragan
Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling. Bioinform. 28(6): 851-857 (2012) - [j19]Chenwei Wang, Alperen Taciroglu, Stefan Maetschke
mCOPA: analysis of heterogeneous features in cancer expression data. J. Clin. Bioinform. 2: 22 (2012) - 2011
- [j18]Hans L. Bodlaender
Quadratic Kernelization for Convex Recoloring of Trees. Algorithmica 61(2): 362-388 (2011) - [j17]Chikako Ragan, Michael Zuker, Mark A. Ragan
Quantitative Prediction of miRNA-mRNA Interaction Based on Equilibrium Concentrations. PLoS Comput. Biol. 7(2) (2011) - 2010
- [j16]Stefan Maetschke
A visual framework for sequence analysis using n-grams and spectral rearrangement. Bioinform. 26(6): 737-744 (2010) - [j15]Melissa J. Davis
Automatic, context-specific generation of Gene Ontology slims. BMC Bioinform. 11: 498 (2010) - [j14]Joo-Young Choi, Melissa J. Davis
A Semantic Web Ontology for Small Molecules and Their Biological Targets. J. Chem. Inf. Model. 50(5): 732-741 (2010)
2000 – 2009
- 2009
- [j13]Andrés Esteban-Marcos, Aaron E. Darling
Seevolution: visualizing chromosome evolution. Bioinform. 25(7): 960-961 (2009) - [j12]Tim McComb, Oliver Cairncross, Andrew B. Noske, David L. A. Wood, Brad J. Marsh, Mark A. Ragan
IllouraTM: a software tool for analysis, visualization and semantic querying of cellular and other spatial biological data. Bioinform. 25(9): 1208-1210 (2009) - [j11]Chang Shin, Simon Wong, Melissa J. Davis
Protein-protein interaction as a predictor of subcellular location. BMC Syst. Biol. 3: 28 (2009) - [j10]Todd J. Treangen, Aaron E. Darling
A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats. IEEE ACM Trans. Comput. Biol. Bioinform. 6(2): 180-189 (2009) - 2008
- [j9]Mark A. Ragan
Genome-Scale Computational Biology and Bioinformatics in Australia. PLoS Comput. Biol. 4(8) (2008) - [c8]Melissa J. Davis, Andrew F. Newman, Imran Khan, Jane Hunter, Mark A. Ragan:
Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions. APBC 2008: 145-154 - [c7]Todd J. Treangen, Aaron E. Darling, Mark A. Ragan
Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats. ISBRA 2008: 74-86 - [c6]Simon Wong, Mark A. Ragan
MACHOS: Markov clusters of homologous subsequences. ISMB 2008: 77-85 - [c5]Mark A. Ragan
The Visible Cell Project: Changing the Way We Think about Cells. ISPAN 2008: 10 - 2007
- [j8]Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan:
A two-phase strategy for detecting recombination in nucleotide sequences. South Afr. Comput. J. 38: 20-27 (2007) - [c4]Benny Chor, Michael R. Fellows, Mark A. Ragan, Igor Razgon, Frances A. Rosamond, Sagi Snir:
Connected Coloring Completion for General Graphs: Algorithms and Complexity. COCOON 2007: 75-85 - [c3]Hans L. Bodlaender, Michael R. Fellows, Michael A. Langston, Mark A. Ragan, Frances A. Rosamond, Mark Weyer:
Quadratic Kernelization for Convex Recoloring of Trees. COCOON 2007: 86-96 - 2006
- [j7]Kevin Burrage
Advanced computing for systems biology. Briefings Bioinform. 7(4): 390-398 (2006) - [j6]Alexander García Castro, Philippe Rocca-Serra, Robert Stevens, Chris F. Taylor, Karim Nashar, Mark A. Ragan
The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case. BMC Bioinform. 7: 267 (2006) - [j5]Cheong Xin Chan
Detecting recombination in evolving nucleotide sequences. BMC Bioinform. 7: 412 (2006) - [c2]Hans L. Bodlaender, Michael R. Fellows, Michael A. Langston, Mark A. Ragan, Frances A. Rosamond, Mark Weyer:
Kernelization for Convex Recoloring. ACiD 2006: 23-35 - [c1]Mark A. Ragan:
Automating the Search for Lateral Gene Transfer. APBC 2006: 3 - 2005
- [j4]Robert G. Beiko
A word-oriented approach to alignment validation. Bioinform. 21(10): 2230-2239 (2005) - [j3]Alexander García Castro, Samuel Thoraval, Leyla J. García
Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator. BMC Bioinform. 6: 87 (2005) - 2004
- [j2]Timothy J. Harlow, J. Peter Gogarten
A hybrid clustering approach to recognition of protein families in 114 microbial genomes. BMC Bioinform. 5: 45 (2004)
1990 – 1999
- 1990
- [j1]Carolyn J. Bird, Ellen L. Rice, Colleen A. Murphy, Qing Yan Liu, Mark A. Ragan
Nucleotide sequences of 18S ribosomal RNA genes from the red algae Gracilaria tikvahiae McLachlan, Gracilaria verrucosa (Hudson) Papenfuss and Gracilariopsis sp. Nucleic Acids Res. 18(13): 4023-4024 (1990)
Coauthor Index
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