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HRP20240189T1 - Postupak i komplet za utvrđivanje odumiranja stanica ili tkiva ili tkivnog ili staničnog podrijetla dnk-a analizom metilacije dnk-a - Google Patents

Postupak i komplet za utvrđivanje odumiranja stanica ili tkiva ili tkivnog ili staničnog podrijetla dnk-a analizom metilacije dnk-a Download PDF

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Publication number
HRP20240189T1
HRP20240189T1 HRP20240189TT HRP20240189T HRP20240189T1 HR P20240189 T1 HRP20240189 T1 HR P20240189T1 HR P20240189T T HRP20240189T T HR P20240189TT HR P20240189 T HRP20240189 T HR P20240189T HR P20240189 T1 HRP20240189 T1 HR P20240189T1
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tissue
cell
dna
type
sequence
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HRP20240189TT
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Yuval DOR
Ruth SHEMER
Benjamin Glaser
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Yissum Research And Development Company Of The Hebrew University Of Jerusalem Ltd.
Hadasit Medical Research Services And Development Ltd.
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Publication of HRP20240189T1 publication Critical patent/HRP20240189T1/hr

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    • CCHEMISTRY; METALLURGY
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6881Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for tissue or cell typing, e.g. human leukocyte antigen [HLA] probes
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/154Methylation markers

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
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  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
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Claims (9)

1. Postupak otkrivanja odumiranja određene vrste stanice ili tkiva u ispitanika koji sadrži određivanje potječe li nestanična DNK sadržana u uzorku krvi ispitanika od te vrste stanice ili tkiva, pri čemu na navedeno određivanje utječe utvrđivanje statusa metilacije najmanje četiriju mjesta metilacije na kontinuiranoj sekvenci na istoj molekuli nestanične DNK, pri čemu navedena sekvenca ne sadrži više od 300 nukleotida, pri čemu status metilacije svakog od navedenih barem četiriju mjesta metilacije na navedenoj kontinuiranoj sekvenci navedene iste molekule DNK-a karakteristične za navedenu vrstu stanice ili tkiva ukazuje na odumiranje te vrste stanice ili tkiva.
2. Postupak određivanja potječe li DNK iz vrste stanice ili tkiva koji se promatraju u uzorku, pri čemu postupak sadrži: utvrđivanje statusa metilacije najmanje četiriju mjesta metilacije na kontinuiranoj sekvenci na istoj molekuli DNK-a, pri čemu navedena sekvenca ne sadrži više od 300 nukleotida, pri čemu status metilacije svakog od navedenih barem četiriju mjesta metilacije na navedenoj kontinuiranoj sekvenci iste molekule DNK-a ukazuje na to da DNK potječe od vrste stanice ili tkiva koji se promatraju.
3. Postupak prema zahtjevu 1 ili 2, pri čemu a. navedeni status metilacije karakterističan je za zdravu vrstu stanice ili tkivo koji se promatraju; b. navedena sekvenca sadrži između 50 i 250 nukleotida; c. navedena vrsta stanice ili tkivo ljudska je vrsta stanice ili ljudsko tkivo; d. navedena vrsta stanice odabrana je iz skupine koja se sastoji od beta stanice gušterače, egzokrine stanice gušterače, hepatocita, moždane stanice, plućne stanice, stanice maternice, bubrežne stanice, stanice dojke, adipocita, stanice debelog crijeva, stanice rektuma, kardiomiocita, stanice skeletnih mišića, stanice prostate i stanice štitnjače; ili e. navedeno tkivo odabrano je iz skupine koja se sastoji od tkiva gušterače, tkiva jetre, tkiva pluća, moždanog tkiva, tkiva maternice, bubrežnog tkiva, tkiva dojke, masnog tkiva, tkiva debelog crijeva, tkiva rektuma, srčanog tkiva, tkiva skeletnih mišića, tkiva prostate i tkiva štitnjače.
4. Postupak prema zahtjevu 2, pri čemu je navedena DNK nestanična DNK ili stanična DNK.
5. Postupak prema zahtjevu 2, pri čemu uzorak sadrži tjelesnu tekućinu ili se radi o uzorku krvi.
6. Postupak prema zahtjevu 5, pri čemu je navedena tjelesna tekućina odabrana iz skupine koja se sastoji od krvi, plazme, sperme, mlijeka, mokraće, sline i cerebrospinalne tekućine.
7. Postupak prema zahtjevu 1 – 2, 4 i 5, pri čemu na navedeno utvrđivanje ili određivanje utječe: a. uporaba barem jednog oligonukleotida ovisnog o metilaciji; b. uporaba oligonukleotida neovisnog o metilaciji; c. uporaba barem dvaju oligonukleotida neovisnih o metilaciji; d. uporaba višestruke reakcije; ili e. sljedeće: (i) izlaganje DNK-a u uzorku bisulfitu da bi se demetilirani citozini iz DNK-a konvertirali u uracile; (ii) klonska amplifikacija navedene kontinuirane sekvence DNK-a s pomoću oligonukleotida koji hibridiziraju u sekvencu nukleinske kiseline koja je spojena s prvim i zadnjim od navedenih barem četiriju mjesta metilacije na navedenoj kontinuiranoj sekvenci DNK-a; i (iii) sekvenciranje navedene klonski amplificirane kontinuirane sekvence DNK-a.
8. Postupak prema zahtjevu 1 ili 4, pri čemu uzorak sadrži nestaničnu DNK koja potječe iz druge stanice koja nije identična navedenoj vrsti stanice ili tkivu.
9. Postupak prema zahtjevu 8, koji nadalje sadrži analiziranje količine nestanične DNK koja potječe iz navedene vrste stanice ili tkiva, odnosno količine nestanične DNK koja potječe iz navedene druge stanice, ili analiziranje količine nestanične DNK koja potječe iz navedene vrste stanice ili tkiva, odnosno ukupne količine nestanične DNK u uzorku; ili sadrži analiziranje količine nestanične DNK koja potječe iz navedene vrste stanice ili tkiva, odnosno ukupne količine nestanične DNK u uzorku.
HRP20240189TT 2014-04-14 2015-04-14 Postupak i komplet za utvrđivanje odumiranja stanica ili tkiva ili tkivnog ili staničnog podrijetla dnk-a analizom metilacije dnk-a HRP20240189T1 (hr)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201461979233P 2014-04-14 2014-04-14
EP22158931.0A EP4026917B1 (en) 2014-04-14 2015-04-14 A method and kit for determining the death of cells or tissue or the tissue or cell origin of dna by dna methylation analysis

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US (3) US11203784B2 (hr)
EP (4) EP3132055A2 (hr)
JP (1) JP6750879B2 (hr)
CN (1) CN106574296B (hr)
DK (2) DK3643795T3 (hr)
ES (1) ES2974838T3 (hr)
FI (1) FI4026917T3 (hr)
HR (1) HRP20240189T1 (hr)
IL (1) IL248299B (hr)
LT (1) LT4026917T (hr)
PL (1) PL4026917T3 (hr)
PT (1) PT4026917T (hr)
SI (1) SI4026917T1 (hr)
WO (2) WO2015159292A2 (hr)

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