Nothing Special   »   [go: up one dir, main page]

Yang et al., 2020 - Google Patents

Macrocyclic peptides uncover a novel binding mode for reversible inhibitors of LSD1

Yang et al., 2020

View PDF @Full View
Document ID
3333043039517427358
Author
Yang J
Talibov V
Peintner S
Rhee C
Poongavanam V
Geitmann M
Sebastiano M
Simon B
Hennig J
Dobritzsch D
Danielson U
Kihlberg J
Publication year
Publication venue
ACS omega

External Links

Snippet

Lysine-specific demethylase 1 (LSD1) is an epigenetic enzyme which regulates the methylation of Lys4 of histone 3 (H3) and is overexpressed in certain cancers. We used structures of H3 substrate analogues bound to LSD1 to design macrocyclic peptide …
Continue reading at pubs.acs.org (PDF) (other versions)

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • GPHYSICS
    • G06COMPUTING; CALCULATING; COUNTING
    • G06FELECTRICAL DIGITAL DATA PROCESSING
    • G06F19/00Digital computing or data processing equipment or methods, specially adapted for specific applications
    • G06F19/10Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
    • G06F19/16Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for molecular structure, e.g. structure alignment, structural or functional relations, protein folding, domain topologies, drug targeting using structure data, involving two-dimensional or three-dimensional structures
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by the preceding groups
    • G01N33/48Investigating or analysing materials by specific methods not covered by the preceding groups biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICRO-ORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING OR MAINTAINING MICRO-ORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity

Similar Documents

Publication Publication Date Title
Yang et al. Macrocyclic peptides uncover a novel binding mode for reversible inhibitors of LSD1
Lin et al. Structure-based stabilization of non-native protein–protein interactions of coronavirus nucleocapsid proteins in antiviral drug design
Chen et al. Arylfluorosulfates inactivate intracellular lipid binding protein (s) through chemoselective SuFEx reaction with a binding site Tyr residue
Lee et al. Mapping the interactions of the p53 transactivation domain with the KIX domain of CBP
Pervushin et al. Structure and inhibition of the SARS coronavirus envelope protein ion channel
Tortorici et al. Protein recognition by short peptide reversible inhibitors of the chromatin-modifying LSD1/CoREST lysine demethylase
Hammoudeh et al. Multiple independent binding sites for small-molecule inhibitors on the oncoprotein c-Myc
Cook et al. Three-dimensional structure and interaction studies of hepatitis C virus p7 in 1, 2-dihexanoyl-sn-glycero-3-phosphocholine by solution nuclear magnetic resonance
Frank et al. Discovery of a potent stapled helix peptide that binds to the 70N domain of replication protein A
Deshmukh et al. Conformation and dynamics of the Gag polyprotein of the human immunodeficiency virus 1 studied by NMR spectroscopy
Amacher et al. Stereochemical preferences modulate affinity and selectivity among five PDZ domains that bind CFTR: comparative structural and sequence analyses
Wu et al. Structural basis of arginine asymmetrical dimethylation by PRMT6
Duncan et al. Discovery and characterization of a nonphosphorylated cyclic peptide inhibitor of the peptidylprolyl isomerase, Pin1
Diller et al. Rational, computer-enabled peptide drug design: principles, methods, applications and future directions
Geist et al. Direct NMR probing of hydration shells of protein ligand interfaces and its application to drug design
Velazquez et al. Conformational selection in the recognition of phosphorylated substrates by the catalytic domain of human Pin1
Santofimia-Castaño et al. Amphipathic helical peptides hamper protein-protein interactions of the intrinsically disordered chromatin nuclear protein 1 (NUPR1)
Qin et al. Potent inhibition of HIF1α and p300 interaction by a constrained peptide derived from CITED2
Marchand et al. Discovery of inhibitors of four bromodomains by fragment-anchored ligand docking
Koehler et al. DNA binding by Sgf11 protein affects histone H2B deubiquitination by Spt-Ada-Gcn5-acetyltransferase (SAGA)
Sammak et al. The structure of INI 1/hSNF 5 RPT 1 and its interactions with the c‐MYC: MAX heterodimer provide insights into the interplay between MYC and the SWI/SNF chromatin remodeling complex
Velazquez et al. Conformation-directed catalysis and coupled enzyme–substrate dynamics in Pin1 phosphorylation-dependent cis–trans isomerase
Llabres et al. Mechanism of the pseudoirreversible binding of amantadine to the M2 proton channel
Bodor et al. DYNLL2 dynein light chain binds to an extended linear motif of myosin 5a tail that has structural plasticity
Desrochers et al. Molecular basis of interactions between SH3 domain-containing proteins and the proline-rich region of the ubiquitin ligase Itch