PEPPER-Margin-DeepVariant
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Updated
Jan 12, 2024 - Python
PEPPER-Margin-DeepVariant
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Long-reads Gap-free Chromosome-scale Assembler
ClairS - a deep-learning method for long-read somatic small variant calling
Tandem repeat expansion detection or genotyping from long-read alignments
Graph-based assembly phasing
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Predict plasmids from uncorrected long read data
Minimizer-based assembly scaffolding and mapping using long reads
Order and orientation of complete bacterial genomes
An algorithm for centromere assembly using long error-prone reads
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
Derives consensus sequences from a set of long noisy reads by clustering and error correction.
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
Clair3-Trio: variant calling in trio using Nanopore long-reads
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