Target site duplication assessment from alignment file and genomic location of insertion sites.
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Updated
Dec 21, 2023 - Python
Target site duplication assessment from alignment file and genomic location of insertion sites.
A flexible complex genome rearrangement simulator for short and long reads
A small example to test DENTIST's workflow
Synthetically Engineered Wastewater sequence data for Assessing Genomic Entities
Annotate MEI in a VCF file containing sequence-resolved structural variation calls
Adapter+Barcode trimming from Pacbio HiFi reads
Mitochondrial Long-read Iterative Assembly
pipeline for working with PacBio long read RNA data using the outputs of isoseq3
A short tandem repeat (STR) genotyping and analysis toolkit for long reads
SV genotyper for long reads with a variation graph
Coronavirus (SARS-Cov-2) sequencing analysis
YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
Clair3-Trio: variant calling in trio using Nanopore long-reads
Derives consensus sequences from a set of long noisy reads by clustering and error correction.
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
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