ImageJ functions and macros for working with thermal image files
ImageJ macros and scripts written at the imaging facility MRI
ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells
quantixed FIJI update site
an ImageJ toolset for EM image analysis
ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)
Jupyter notebook based multiplex image processing pipeline.
#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology
Bringing the powerfull CMTK registration tool to ImageJ, multi platform, parallel automatic batch processing, neat user interface, works out of the box.
Stereological macros for ImageJ
Set of ImageJ (FIJI) macros to import raw TIF images of time series Calcium imaging recordings, correct for photo-bleaching, identify regions of highest fluorescence change to assist in ROI placement, and calculate deltaF/F as a function of time for each ROI. Please cite Caccavano et. al. bioRxiv 2020.
A simple macro to analysis spheroid areas
An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.
Collection of macros for image processing in Fiji/ImageJ
A repository containing ImageJ macros for the Snyder Lab
Fiji script for automated filopodia counting from single cell images.
FIJI dropdown menu for mFISH registration, segmentation, and quantification.
MRI ImageJ related python (jython) module.
A series of macros that enable efficient cropping, segmentation and analysis of the nuclei within .lif files.
Add a description, image, and links to the fiji-macro topic page so that developers can more easily learn about it.
To associate your repository with the fiji-macro topic, visit your repo's landing page and select "manage topics."