A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

A vocabulary for describing Zebrafish Phenotypes

Code for "Convergent Temperature Representations in Artificial and Biological Neural Networks"

Software for performing offline tracking of zebrafish larvae.

Modelling the larval zebrafish field of view for illustration purposes

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

Zebrafish embryo fluorescence quantification

A simple tool for zebrafish brain visualization.

Napari plugin for spatial RNA quantification

Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish

🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

Set of functions, scripts and notebooks used in the brain-wide auditory processing project

Early life GC exposed time-series mRNA-seq analysis and DNA methylome

Software for analyis of zebrafish embryo sponaneous tail contractions and photomotor response

Computing functional maps in zebrafish brain

Zebrafish project for Champalimaud Research

Analysis of 16S rRNA and in vitro data from larval zebrafish with loperamide treatment

This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.