Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads

Inspired from https://www.bioinformatics.org/sms2/combine_fasta.html.

FastEAR - Fast(er) Extraction of Alignment Regions from FASTA

Repository for the course "Introduction to Bioinformatics" from the Undergraduate Program in Genomic Sciences, UNAM.

VAPiD: Viral Annotation and Identification Pipeline

The official Seqs-Extractor Repository

Sorting of DNA sequences within a Multi-Fasta file

DNA nucleotide count

BASH scripts to extract information from FASTA files.

Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming contigs and converting FASTQ to FASTA. Written in Bash. All in one place.

Syntax highlighting for computational biology

Fasta file splitted into individual entries

get bed file for N bases from a FASTA file

Improve your metagenomic reference sequence: Simple adapter and contamination FASTA masking using bowtie2 and bedtools

Bioinformatics projects and linux scripts.

Utilities for analyzing next generation sequencing data.

A small collection of one-liners in a one bash script for fasta files processing.

Comparative Analysis of DNA sequencing Algorithm

simple and convenient program to convert fasta sequences to fastq sequences

Fasta_splitter