Syntax highlighting for computational biology
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Updated
Mar 4, 2023 - Shell
Syntax highlighting for computational biology
VAPiD: Viral Annotation and Identification Pipeline
Utilities for analyzing next generation sequencing data.
Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming contigs and converting FASTQ to FASTA. Written in Bash. All in one place.
Donut: automated Circos visualization of multiple fasta files within a docker image
Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads
Improve your metagenomic reference sequence: Simple adapter and contamination FASTA masking using bowtie2 and bedtools
A small collection of one-liners in a one bash script for fasta files processing.
simple and convenient program to convert fasta sequences to fastq sequences
BASH scripts to extract information from FASTA files.
The official Seqs-Extractor Repository
Comparative Analysis of DNA sequencing Algorithm
Inspired from https://www.bioinformatics.org/sms2/combine_fasta.html.
The VIM-based multiple sequence alignment (MSA) editor.
get bed file for N bases from a FASTA file
Small bash script to convert multiple (multi-)FASTAs into single file with single header
Add a description, image, and links to the fasta topic page so that developers can more easily learn about it.
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