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Masaaki Kotera
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2020 – today
- 2022
- [c3]Taichi Nishimura, Katsuhiko Ishiguro, Keita Higuchi, Masaaki Kotera:
Multimodal Dish Pairing: Predicting Side Dishes to Serve with a Main Dish. CEA++@MM 2022: 1-9 - [c2]Sara Ozeki, Masaaki Kotera, Katushiko Ishiguro, Taichi Nishimura, Keita Higuchi:
Recipe Recommendation for Balancing Ingredient Preference and Daily Nutrients. CEA++@MM 2022: 11-19 - 2021
- [i4]Rina Onda, Zhengyan Gao, Masaaki Kotera, Kenta Oono:
Fast Estimation Method for the Stability of Ensemble Feature Selectors. CoRR abs/2108.01485 (2021) - 2020
- [j25]Chia-Hsiu Chen, Kenichi Tanaka, Masaaki Kotera, Kimito Funatsu:
Comparison and improvement of the predictability and interpretability with ensemble learning models in QSPR applications. J. Cheminformatics 12(1): 19 (2020) - [i3]Katsuhiko Ishiguro, Kazuya Ujihara, Ryohto Sawada, Hirotaka Akita, Masaaki Kotera:
Data Transfer Approaches to Improve Seq-to-Seq Retrosynthesis. CoRR abs/2010.00792 (2020) - [i2]Rutger A. Vos
, Toshiaki Katayama
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2019
- [j24]Kohei Amano, Tsubasa Matsumoto, Kenichi Tanaka, Kimito Funatsu, Masaaki Kotera
Metabolic disassembler for understanding and predicting the biosynthetic units of natural products. BMC Bioinform. 20(1): 728 (2019) - [j23]Yasuo Tabei, Masaaki Kotera, Ryusuke Sawada, Yoshihiro Yamanishi:
Network-based characterization of drug-protein interaction signatures with a space-efficient approach. BMC Syst. Biol. 13-S(2): 39:1-39:15 (2019) - [i1]Toshiaki Katayama
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019) - 2016
- [j22]Yasuo Tabei, Yoshihiro Yamanishi, Masaaki Kotera:
Simultaneous prediction of enzyme orthologs from chemical transformation patterns for de novo metabolic pathway reconstruction. Bioinform. 32(12): 278-287 (2016) - [j21]Yuki Moriya, Takuji Yamada, Shujiro Okuda, Zenichi Nakagawa, Masaaki Kotera, Toshiaki Tokimatsu
Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs. J. Chem. Inf. Model. 56(3): 510-516 (2016) - 2015
- [j20]Yoshihiro Yamanishi, Yasuo Tabei, Masaaki Kotera:
Metabolome-scale de novo pathway reconstruction using regioisomer-sensitive graph alignments. Bioinform. 31(12): 161-170 (2015) - [j19]Hiroaki Iwata, Ryusuke Sawada, Sayaka Mizutani, Masaaki Kotera, Yoshihiro Yamanishi:
Large-Scale Prediction of Beneficial Drug Combinations Using Drug Efficacy and Target Profiles. J. Chem. Inf. Model. 55(12): 2705-2716 (2015) - 2014
- [j18]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Ai Muto, Yuki Moriya
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach. Bioinform. 30(12): 165-174 (2014) - [j17]Sayaka Mizutani, Yousuke Noro, Masaaki Kotera, Susumu Goto:
Pharmacoepidemiological characterization of drug-induced adverse reaction clusters towards understanding of their mechanisms. Comput. Biol. Chem. 50: 50-59 (2014) - [j16]Masaaki Kotera, Yosuke Nishimura
PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list. J. Bioinform. Comput. Biol. 12(6) (2014) - [j15]Kenichi Tanaka, Kiyoko F. Aoki-Kinoshita
WURCS: The Web3 Unique Representation of Carbohydrate Structures. J. Chem. Inf. Model. 54(6): 1558-1566 (2014) - [j14]Yoshihiro Yamanishi, Masaaki Kotera, Yuki Moriya
DINIES: drug-target interaction network inference engine based on supervised analysis. Nucleic Acids Res. 42(Webserver-Issue): 39-45 (2014) - 2013
- [j13]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Toshiaki Tokimatsu
Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets. Bioinform. 29(13): 135-144 (2013) - [j12]Hiroaki Iwata, Sayaka Mizutani, Yasuo Tabei, Masaaki Kotera, Susumu Goto, Yoshihiro Yamanishi:
Inferring protein domains associated with drug side effects based on drug-target interaction network. BMC Syst. Biol. 7(S-6): S18 (2013) - [j11]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics. BMC Syst. Biol. 7(S-6): S2 (2013) - [j10]Ai Muto, Masaaki Kotera, Toshiaki Tokimatsu
Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions. J. Chem. Inf. Model. 53(3): 613-622 (2013) - [c1]Yasuo Tabei, Akihiro Kishimoto, Masaaki Kotera, Yoshihiro Yamanishi:
Succinct interval-splitting tree for scalable similarity search of compound-protein pairs with property constraints. KDD 2013: 176-184 - 2012
- [j9]Masataka Takarabe, Masaaki Kotera, Yosuke Nishimura
Drug target prediction using adverse event report systems: a pharmacogenomic approach. Bioinform. 28(18): 611-618 (2012) - [j8]Yoshihiro Yamanishi, Edouard Pauwels, Masaaki Kotera:
Drug Side-Effect Prediction Based on the Integration of Chemical and Biological Spaces. J. Chem. Inf. Model. 52(12): 3284-3292 (2012) - [j7]Masaaki Kotera, Yoshihiro Yamanishi, Yuki Moriya
GENIES: gene network inference engine based on supervised analysis. Nucleic Acids Res. 40(Web-Server-Issue): 162-167 (2012) - 2011
- [j6]Masaaki Kotera, Toshiaki Tokimatsu
MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites. BMC Bioinform. 12(S-14): S1 (2011) - [j5]Masataka Takarabe, Daichi Shigemizu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa:
Network-Based Analysis and Characterization of Adverse Drug-Drug Interactions. J. Chem. Inf. Model. 51(11): 2977-2985 (2011) - 2010
- [j4]Yoshihiro Yamanishi, Masaaki Kotera, Minoru Kanehisa, Susumu Goto:
Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework. Bioinform. 26(12): 246-254 (2010) - [j3]Yuki Moriya
PathPred: an enzyme-catalyzed metabolic pathway prediction server. Nucleic Acids Res. 38(Web-Server-Issue): 138-143 (2010)
2000 – 2009
- 2009
- [j2]Yoshihiro Yamanishi, Masahiro Hattori
E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs. Bioinform. 25(12) (2009) - 2008
- [j1]Masaaki Kotera, Andrew G. McDonald
Eliciting Possible Reaction Equations and Metabolic Pathways Involving Orphan Metabolites. J. Chem. Inf. Model. 48(12): 2335-2349 (2008)
Coauthor Index
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