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Susumu Goto
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2020 – today
- 2022
- [j54]Shuya Ikeda
, Hiromasa Ono
TogoID: an exploratory ID converter to bridge biological datasets. Bioinform. 38(17): 4194-4199 (2022) - 2020
- [j53]Takuya Aramaki, Romain Blanc-Mathieu, Hisashi Endo
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold. Bioinform. 36(7): 2251-2252 (2020)
2010 – 2019
- 2019
- [j52]Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Masaki Matsumoto
The jPOST environment: an integrated proteomics data repository and database. Nucleic Acids Res. 47(Database-Issue): D1218-D1224 (2019) - [c5]Masanobu Inubushi
Transferring Reservoir Computing: Formulation and Application to Fluid Physics. ICANN (Workshop) 2019: 193-199 - [c4]Shuichi Kawashima, Toshiaki Katayama, Yuki Moriya, Shinobu Okamoto, Yasunori Yamamoto, Susumu Goto:
Integrated Growth Media Database by Standardizing Ingredient Information. SWAT4HCLS 2019: 165-166 - 2018
- [j51]Takeshi Ooshida
Collective Motion of Repulsive Brownian Particles in Single-File Diffusion with and without Overtaking. Entropy 20(8): 565 (2018) - 2017
- [j50]Yugo Shimizu, Hiroyuki Ogata, Susumu Goto:
Discriminating the reaction types of plant type III polyketide synthases. Bioinform. 33(13): 1937-1943 (2017) - [j49]Yosuke Nishimura
ViPTree: the viral proteomic tree server. Bioinform. 33(15): 2379-2380 (2017) - [j48]Shujiro Okuda, Yu Watanabe, Yuki Moriya
jPOSTrepo: an international standard data repository for proteomes. Nucleic Acids Res. 45(Database-Issue): D1107-D1111 (2017) - 2016
- [j47]Yuki Moriya, Takuji Yamada, Shujiro Okuda, Zenichi Nakagawa, Masaaki Kotera, Toshiaki Tokimatsu
Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs. J. Chem. Inf. Model. 56(3): 510-516 (2016) - 2014
- [j46]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Ai Muto, Yuki Moriya
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach. Bioinform. 30(12): 165-174 (2014) - [j45]Sayaka Mizutani, Yousuke Noro, Masaaki Kotera, Susumu Goto:
Pharmacoepidemiological characterization of drug-induced adverse reaction clusters towards understanding of their mechanisms. Comput. Biol. Chem. 50: 50-59 (2014) - [j44]Masaaki Kotera, Yosuke Nishimura
PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list. J. Bioinform. Comput. Biol. 12(6) (2014) - [j43]Minoru Kanehisa, Susumu Goto, Yoko Sato, Masayuki Kawashima, Miho Furumichi, Mao Tanabe:
Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 42(Database-Issue): 199-205 (2014) - [j42]Yoshihiro Yamanishi, Masaaki Kotera, Yuki Moriya
DINIES: drug-target interaction network inference engine based on supervised analysis. Nucleic Acids Res. 42(Webserver-Issue): 39-45 (2014) - 2013
- [j41]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Toshiaki Tokimatsu
Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets. Bioinform. 29(13): 135-144 (2013) - [j40]Hiroaki Iwata, Sayaka Mizutani, Yasuo Tabei, Masaaki Kotera, Susumu Goto, Yoshihiro Yamanishi:
Inferring protein domains associated with drug side effects based on drug-target interaction network. BMC Syst. Biol. 7(S-6): S18 (2013) - [j39]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics. BMC Syst. Biol. 7(S-6): S2 (2013) - [j38]Ai Muto, Masaaki Kotera, Toshiaki Tokimatsu
Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions. J. Chem. Inf. Model. 53(3): 613-622 (2013) - [j37]Akihiro Nakaya, Toshiaki Katayama, Masumi Itoh, Kazushi Hiranuka, Shuichi Kawashima
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters. Nucleic Acids Res. 41(Database-Issue): 353-357 (2013) - 2012
- [j36]Sayaka Mizutani, Edouard Pauwels, Véronique Stoven, Susumu Goto, Yoshihiro Yamanishi:
Relating drug-protein interaction network with drug side effects. Bioinform. 28(18): 522-528 (2012) - [j35]Masataka Takarabe, Masaaki Kotera, Yosuke Nishimura
Drug target prediction using adverse event report systems: a pharmacogenomic approach. Bioinform. 28(18): 611-618 (2012) - [j34]Minoru Kanehisa, Susumu Goto, Yoko Sato, Miho Furumichi, Mao Tanabe:
KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 40(Database-Issue): 109-114 (2012) - [j33]Masaaki Kotera, Yoshihiro Yamanishi, Yuki Moriya
GENIES: gene network inference engine based on supervised analysis. Nucleic Acids Res. 40(Web-Server-Issue): 162-167 (2012) - 2011
- [j32]Masaaki Kotera, Toshiaki Tokimatsu
MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites. BMC Bioinform. 12(S-14): S1 (2011) - [j31]Masataka Takarabe, Daichi Shigemizu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa:
Network-Based Analysis and Characterization of Adverse Drug-Drug Interactions. J. Chem. Inf. Model. 51(11): 2977-2985 (2011) - 2010
- [j30]Yoshihiro Yamanishi, Masaaki Kotera, Minoru Kanehisa, Susumu Goto:
Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework. Bioinform. 26(12): 246-254 (2010) - [j29]Minoru Kanehisa, Susumu Goto, Miho Furumichi, Mao Tanabe, Mika Hirakawa:
KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res. 38(Database-Issue): 355-360 (2010) - [j28]Yuki Moriya
PathPred: an enzyme-catalyzed metabolic pathway prediction server. Nucleic Acids Res. 38(Web-Server-Issue): 138-143 (2010) - [j27]Masahiro Hattori
SIMCOMP/SUBCOMP: chemical structure search servers for network analyses. Nucleic Acids Res. 38(Web-Server-Issue): 652-656 (2010)
2000 – 2009
- 2009
- [j26]Yoshihiro Yamanishi, Masahiro Hattori
E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs. Bioinform. 25(12) (2009) - [j25]Lasse Folkersen
GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome. Bioinform. 25(15): 1978-1979 (2009) - [j24]Daichi Shigemizu, Michihiro Araki, Shujiro Okuda
Extraction and Analysis of Chemical Modification Patterns in Drug Development. J. Chem. Inf. Model. 49(4): 1122-1129 (2009) - 2008
- [j23]C. Nelson Hayes, Diego Diez
varDB: a pathogen-specific sequence database of protein families involved in antigenic variation. Bioinform. 24(21): 2564-2565 (2008) - [j22]Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori
KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36(Database-Issue): 480-484 (2008) - [j21]Shujiro Okuda
KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Res. 36(Web-Server-Issue): 423-426 (2008) - 2007
- [j20]Vachiranee Limviphuvadh
The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs). Bioinform. 23(16): 2129-2138 (2007) - [j19]Masashi Fujita, Hisaaki Mihara
Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach. BMC Bioinform. 8 (2007) - [j18]Alex Gutteridge
Regulation of metabolic networks by small molecule metabolites. BMC Bioinform. 8 (2007) - [j17]Mina Oh, Takuji Yamada, Masahiro Hattori
Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation Pathways. J. Chem. Inf. Model. 47(4): 1702-1712 (2007) - 2006
- [j16]Takuji Yamada, Minoru Kanehisa, Susumu Goto:
Extraction of phylogenetic network modules from the metabolic network. BMC Bioinform. 7: 130 (2006) - [j15]Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita
From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res. 34(Database-Issue): 354-357 (2006) - [j14]Shujiro Okuda
ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Res. 34(Database-Issue): 358-362 (2006) - [j13]Ali Masoudi-Nejad
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Res. 34(Web-Server-Issue): 459-462 (2006) - 2005
- [j12]Masumi Itoh, Susumu Goto, Tatsuya Akutsu
Fast and accurate database homology search using upper bounds of local alignment scores. Bioinform. 21(7): 912-921 (2005) - [j11]Shin Kawano
Prediction of glycan structures from gene expression data based on glycosyltransferase reactions. Bioinform. 21(21): 3976-3982 (2005) - 2004
- [j10]Minoru Kanehisa, Susumu Goto, Shuichi Kawashima
The KEGG resource for deciphering the genome. Nucleic Acids Res. 32(Database-Issue): 277-280 (2004) - [j9]Kiyoko F. Aoki
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Res. 32(Web-Server-Issue): 267-272 (2004) - 2002
- [j8]Minoru Kanehisa, Susumu Goto, Shuichi Kawashima
The KEGG databases at GenomeNet. Nucleic Acids Res. 30(1): 42-46 (2002) - [j7]Susumu Goto, Yasushi Okuno, Masahiro Hattori, Takaaki Nishioka, Minoru Kanehisa:
LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Res. 30(1): 402-404 (2002) - 2000
- [j6]Minoru Kanehisa, Susumu Goto:
KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28(1): 27-30 (2000) - [j5]Susumu Goto, Takaaki Nishioka, Minoru Kanehisa:
LIGAND: chemical database of enzyme reactions. Nucleic Acids Res. 28(1): 380-382 (2000)
1990 – 1999
- 1999
- [j4]Hiroyuki Ogata, Susumu Goto, Kazushige Sato, Wataru Fujibuchi, Hidemasa Bono
KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 27(1): 29-34 (1999) - [j3]Susumu Goto, Takaaki Nishioka, Minoru Kanehisa:
LIGAND database for enzymes, compounds and reactions. Nucleic Acids Res. 27(1): 377-379 (1999) - 1998
- [j2]Susumu Goto, Takaaki Nishioka, Minoru Kanehisa:
LIGAND: chemical database for enzyme reactions. Bioinform. 14(7): 591-599 (1998) - [c3]Barry Zeeberg, Kevin Watanabe, Susumu Goto, Ross A. Overbeek, Larry Kerschberg, George Michaels:
Metabolic Pathway Interface to Molecular Biology Databases. SSDBM 1998: 238-241 - 1994
- [c2]Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi:
A Deductive Object-Oriented Language for Integrated Genome Databaser. HICSS (5) 1994: 108-110 - 1993
- [c1]Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi:
Object-Oriented Database with Rule-Based Query Interface for Genomic Computation. DASFAA 1993: 65-72 - 1992
- [j1]Toshihisa Takagi, Takahiko Suzuki, Susumu Goto, Kazuo Ushijima:
Evaluation of a deductive database system for CAD applications. Syst. Comput. Jpn. 23(13): 15-27 (1992)
Coauthor Index
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