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Sameer Velankar
Samir S. Velankar
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- affiliation: European Molecular Biology Laboratory, EMBL-EBI, Hinxton, UK
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2020 – today
- 2024
- [j40]Preeti Choudhary
, Zukang Feng
PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank. Database J. Biol. Databases Curation 2024 (2024) - 2023
- [j39]Adam Midlik
PDBImages: a command-line tool for automated macromolecular structure visualization. Bioinform. 39(12) (2023) - [j38]Ibrahim Roshan Kunnakkattu
PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank. J. Cheminformatics 15(1): 117 (2023) - [j37]Matthew Thakur
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022. Nucleic Acids Res. 51(D1): 9-17 (2023) - 2022
- [j36]Neeladri Sen
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs. Briefings Bioinform. 23(4) (2022) - [j35]Mihaly Varadi
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. Nucleic Acids Res. 50(D1): 439-444 (2022) - [j34]Mihaly Varadi
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - 2021
- [j33]Vaishali P. Waman, Neeladri Sen
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies. Briefings Bioinform. 22(2): 742-768 (2021) - [j32]Sreenath Nair
PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data. Bioinform. 37(21): 3950-3952 (2021) - [j31]Glen van Ginkel
PDBeCIF: an open-source mmCIF/CIF parsing and processing package. BMC Bioinform. 22(1): 383 (2021) - [j30]David Sehnal
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Res. 49(Webserver-Issue): 431-437 (2021) - 2020
- [j29]Rachel Drysdale, Charles E. Cook
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. Bioinform. 36(8): 2636-2642 (2020) - [j28]Ian Sillitoe
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation. Nucleic Acids Res. 48(Database-Issue): D314-D319 (2020) - [j27]David R. Armstrong
PDBe: improved findability of macromolecular structure data in the PDB. Nucleic Acids Res. 48(Database-Issue): D335-D343 (2020) - [j26]Mihaly Varadi
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48(Database-Issue): D344-D353 (2020) - [j25]David Sehnal, Sebastian Bittrich
BinaryCIF and CIFTools - Lightweight, efficient and extensible macromolecular data management. PLoS Comput. Biol. 16(10) (2020)
2010 – 2019
- 2019
- [j24]Abhik Mukhopadhyay
Finding enzyme cofactors in Protein Data Bank. Bioinform. 35(18): 3510-3511 (2019) - [j23]Jose M. Dana, Aleksandras Gutmanas
SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins. Nucleic Acids Res. 47(Database-Issue): D482-D489 (2019) - 2018
- [j22]Jasmine Young
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database J. Biol. Databases Curation 2018: bay002 (2018) - [j21]Saqib Mir
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe. Nucleic Acids Res. 46(Database-Issue): D486-D492 (2018) - [c1]David Sehnal, Alexander S. Rose
Mol*: Towards a Common Library and Tools for Web Molecular Graphics. MolVa@EuroVis 2018: 29-33 - 2016
- [j20]Sameer Velankar, Glen van Ginkel
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB. Nucleic Acids Res. 44(Database-Issue): 385-395 (2016) - 2015
- [j19]John D. Westbrook, Chenghua Shao
The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank. Bioinform. 31(8): 1274-1278 (2015) - [j18]Tony E. Lewis, Ian Sillitoe, Antonina Andreeva
Genome3D: exploiting structure to help users understand their sequences. Nucleic Acids Res. 43(Database-Issue): 382-386 (2015) - [j17]Birgit H. M. Meldal
The complex portal - an encyclopaedia of macromolecular complexes. Nucleic Acids Res. 43(Database-Issue): 479-484 (2015) - 2014
- [j16]Aleksandras Gutmanas, Younes Alhroub, Gary M. Battle, John M. Berrisford
PDBe: Protein Data Bank in Europe. Nucleic Acids Res. 42(Database-Issue): 285-291 (2014) - 2013
- [j15]John Gómez, Leyla J. García
BioJS: an open source JavaScript framework for biological data visualization. Bioinform. 29(8): 1103-1104 (2013) - [j14]Jon Chambers, Mark Davies
UniChem: a unified chemical structure cross-referencing and identifier tracking system. J. Cheminformatics 5: 3 (2013) - [j13]Sameer Velankar
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource. Nucleic Acids Res. 41(Database-Issue): 483-489 (2013) - [j12]Tony E. Lewis, Ian Sillitoe, Antonina Andreeva
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. Nucleic Acids Res. 41(Database-Issue): 499-507 (2013) - [j11]Rafael Alcántara
The EBI enzyme portal. Nucleic Acids Res. 41(Database-Issue): 773-780 (2013) - 2012
- [j10]Sameer Velankar
PDBe: Protein Data Bank in Europe. Nucleic Acids Res. 40(Database-Issue): 445-452 (2012) - 2011
- [j9]Sameer Velankar
PDBe: Protein Data Bank in Europe. Nucleic Acids Res. 39(Database-Issue): 402-410 (2011) - [j8]Catherine L. Lawson
EMDataBank.org: unified data resource for CryoEM. Nucleic Acids Res. 39(Database-Issue): 456-464 (2011) - 2010
- [j7]Samir S. Velankar
PDBe: Protein Data Bank in Europe. Nucleic Acids Res. 38(Database-Issue): 308-317 (2010)
2000 – 2009
- 2008
- [j6]Kim Henrick, Zukang Feng, Wolfgang Bluhm, Dimitris Dimitropoulos, Jurgen F. Doreleijers, Shuchismita Dutta
Remediation of the protein data bank archive. Nucleic Acids Res. 36(Database-Issue): 426-433 (2008) - 2006
- [j5]Mohammed Tagari, John G. Tate
E-MSD: improving data deposition and structure quality. Nucleic Acids Res. 34(Database-Issue): 287-290 (2006) - 2005
- [j4]Samir S. Velankar
E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res. 33(Database-Issue): 262-265 (2005) - [j3]Sharmila Pillai, Ville Silventoinen, Kimmo Kallio, M. Senger, Siamak Sobhany, John G. Tate
SOAP-based services provided by the European Bioinformatics Institute. Nucleic Acids Res. 33(Web-Server-Issue): 25-28 (2005) - 2004
- [j2]Adel Golovin, Thomas J. Oldfield, John G. Tate
E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res. 32(Database-Issue): 211-216 (2004) - 2003
- [j1]Harry Boutselakis, Dimitris Dimitropoulos, Joël Fillon, Adel Golovin, Kim Henrick, A. Hussain, John M. C. Ionides, Melford John, Peter A. Keller, Evgeny B. Krissinel, P. McNeil, Avi Naim, Richard H. Newman, Thomas J. Oldfield, Jorge Pineda, Abdel-Krim Rachedi, J. Copeland, Andrey Sitnov, Siamak Sobhany, Antonio Suarez-Uruena, Jawahar Swaminathan
E-MSD: the European Bioinformatics Institute Macromolecular Structure Database. Nucleic Acids Res. 31(1): 458-462 (2003)
Coauthor Index
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