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John L. Markley
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2020 – today
- 2021
- [j15]Hongzhao Shao, Stephen Boulton
, Cristina Olivieri
CHESPA/CHESCA-SPARKY: automated NMR data analysis plugins for SPARKY to map protein allostery. Bioinform. 37(8): 1176-1177 (2021) - [c4]Kumaran Baskaran, Jonathan R. Wedell, Eldon L. Ulrich, Jeffery C. Hoch, John L. Markley:
PyBMRB: Data visualization tool for BioMagResBank. SciPy 2021: 81-84 - 2020
- [j14]Daniel K. Weber, Songlin Wang, John L. Markley
PISA-SPARKY: an interactive SPARKY plugin to analyze oriented solid-state NMR spectra of helical membrane proteins. Bioinform. 36(9): 2915-2916 (2020)
2010 – 2019
- 2019
- [c3]John L. Markley, Hesam Dashti, Jonathan R. Wedell, William M. Westler, Eldon L. Ulrich, Hamid R. Eghbalnia:
Approach to Improving the Quality of Open Data in the Universe of Small Molecules. BIS (Workshops) 2019: 519-530 - 2018
- [j13]Jasmine Young
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database J. Biol. Databases Curation 2018: bay002 (2018) - [j12]Woonghee Lee
PINE-SPARKY.2 for automated NMR-based protein structure research. Bioinform. 34(9): 1586-1588 (2018) - 2016
- [j11]Masashi Yokochi, Naohiro Kobayashi, Eldon L. Ulrich, Akira R. Kinjo
Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins. J. Biomed. Semant. 7: 16 (2016) - 2015
- [j10]Woonghee Lee
NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. Bioinform. 31(8): 1325-1327 (2015) - 2014
- [j9]Helen M. Berman
The Protein Data Bank archive as an open data resource. J. Comput. Aided Mol. Des. 28(10): 1009-1014 (2014) - 2013
- [j8]Woonghee Lee
ADAPT-NMR Enhancer: complete package for reduced dimensionality in protein NMR spectroscopy. Bioinform. 29(4): 515-517 (2013) - 2012
- [j7]Jurgen F. Doreleijers, Wim F. Vranken
NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB. Nucleic Acids Res. 40(Database-Issue): 519-524 (2012) - [c2]Woonghee Lee, John L. Markley:
PACSY database, a relational database management system for Protein structure and nuclear Magnetic Resonance chemical shift analysis. BIBM Workshops 2012: 930-932 - 2011
- [j6]Woonghee Lee
PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination. Bioinform. 27(12): 1727-1728 (2011)
2000 – 2009
- 2009
- [j5]Woonghee Lee
PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy. Bioinform. 25(16): 2085-2087 (2009) - [j4]Arash Bahrami, Amir H. Assadi, John L. Markley, Hamid Eghbalnia:
Probabilistic Interaction Network of Evidence Algorithm and its Application to Complete Labeling of Peak Lists from Protein NMR Spectroscopy. PLoS Comput. Biol. 5(3) (2009) - 2008
- [j3]Eldon L. Ulrich, Hideo Akutsu
BioMagResBank. Nucleic Acids Res. 36(Database-Issue): 402-408 (2008) - [j2]Kim Henrick, Zukang Feng, Wolfgang Bluhm, Dimitris Dimitropoulos, Jurgen F. Doreleijers, Shuchismita Dutta
Remediation of the protein data bank archive. Nucleic Acids Res. 36(Database-Issue): 426-433 (2008) - 2007
- [j1]Helen M. Berman
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Res. 35(Database-Issue): 301-303 (2007) - [c1]John L. Markley, Mark E. Anderson, Qiu Cui, Hamid Eghbalnia, Ian A. Lewis, Adrian D. Hegeman, Jing Li, Christopher F. Schulte, Michael R. Sussman, William M. Westler, Eldon L. Ulrich, Zsolt Zolnai:
New Bioinformatics Resources For Metabolomics. Pacific Symposium on Biocomputing 2007: 157-168
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