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Alexander Schönhuth
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- affiliation: Centrum Wiskunde & Informatica (CWI), Amsterdam, The Netherlands
- affiliation: University of Bielefeld, Faculty of Technology, Germany
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2020 – today
- 2023
- [j33]Xiao Luo, Xiongbin Kang, Alexander Schönhuth
:
Predicting the prevalence of complex genetic diseases from individual genotype profiles using capsule networks. Nat. Mac. Intell. 5(2): 114-125 (2023) - 2022
- [j32]Sumanta Ray, Snehalika Lall, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay
Deep variational graph autoencoders for novel host-directed therapy options against COVID-19. Artif. Intell. Medicine 134: 102418 (2022) - 2021
- [j31]Marleen Balvert
OGRE: Overlap Graph-based metagenomic Read clustEring. Bioinform. 37(7): 905-912 (2021) - 2020
- [c15]Jasmijn A. Baaijens, Leen Stougie, Alexander Schönhuth:
Strain-Aware Assembly of Genomes from Mixed Samples Using Flow Variation Graphs. RECOMB 2020: 221-222
2010 – 2019
- 2019
- [j30]Bojian Yin, Marleen Balvert
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype. Bioinform. 35(14): i538-i547 (2019) - [j29]Jasmijn A. Baaijens
Overlap graph-based generation of haplotigs for diploids and polyploids. Bioinform. 35(21): 4281-4289 (2019) - [j28]Jasmijn A. Baaijens
Full-length de novo viral quasispecies assembly through variation graph construction. Bioinform. 35(24): 5086-5094 (2019) - [j27]Alejandro Lopez Rincon
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection. BMC Bioinform. 20(1): 480:1-480:17 (2019) - [i18]Marleen Balvert, Georgios Patoulidis, Andrew Patti, Timo M. Deist, Christine Eyler, Bas E. Dutilh, Alexander Schönhuth, David Craft:
A Drug Recommendation System (Dr.S) for cancer cell lines. CoRR abs/1912.11548 (2019) - [i17]Marleen Balvert, Alexander Schönhuth:
Artificial Intelligence: Understanding Diseases that People Cannot Understand? ERCIM News 2019(118) (2019) - [i16]Alexander Schönhuth, Leen Stougie:
The Genetic Diversity of Viruses on a Graphical Map: Discovery of Resistant and Virulent Strains. ERCIM News 2019(118) (2019) - [i15]David Laehnemann
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2018
- [c14]Rayan Chikhi, Alexander Schönhuth:
Dualities in Tree Representations. CPM 2018: 18:1-18:12 - [c13]Marleen Balvert, Alexander Schönhuth, Bas E. Dutilh:
Metagenomic read clustering based on overlap graphs. ICCABS 2018: 1 - [c12]Bojian Yin, Marleen Balvert, Davide Zambrano, Alexander Schönhuth, Sander M. Bohté:
An image representation based convolutional network for DNA classification. ICLR (Poster) 2018 - [i14]Rayan Chikhi, Alexander Schönhuth:
Dualities in Tree Representations. CoRR abs/1804.04263 (2018) - [i13]Bojian Yin, Marleen Balvert, Davide Zambrano, Alexander Schönhuth, Sander M. Bohté:
An image representation based convolutional network for DNA classification. CoRR abs/1806.04931 (2018) - 2017
- [j26]Jana Ebler, Alexander Schönhuth
Genotyping inversions and tandem duplications. Bioinform. 33(24): 4015-4023 (2017) - [j25]Johannes Dröge
A probabilistic model to recover individual genomes from metagenomes. PeerJ Comput. Sci. 3: e117 (2017) - 2016
- [j24]I. Gregor, Alexander Schönhuth
Snowball: strain aware gene assembly of metagenomes. Bioinform. 32(17): 649-657 (2016) - [i12]Ulrich Faigle, Alexander Schönhuth:
On Hidden States in Quantum Random Walks. CoRR abs/1601.02882 (2016) - [i11]Alexander Schönhuth, Tobias Marschall:
Eliminating Blind Spots in Genetic Variant Discovery. ERCIM News 2016(104) (2016) - [i10]Johannes Dröge
A probabilistic model to recover individual genomes from metagenomes. PeerJ Prepr. 4: e2626 (2016) - 2015
- [j23]Roland Wittler, Tobias Marschall
Repeat- and error-aware comparison of deletions. Bioinform. 31(18): 2947-2954 (2015) - [j22]Robin Cijvat, Stefan Manegold, Martin L. Kersten, Gunnar W. Klau, Alexander Schönhuth
Genome sequence analysis with MonetDB - A case study on Ebola virus diversity. Datenbank-Spektrum 15(3): 185-191 (2015) - [j21]Murray Patterson
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads. J. Comput. Biol. 22(6): 498-509 (2015) - [c11]Robin Cijvat, Stefan Manegold, Martin L. Kersten, Gunnar W. Klau, Alexander Schönhuth, Tobias Marschall, Ying Zhang:
Genome sequence analysis with monetdb: a case study on ebola virus diversity. BTW Workshops 2015: 143-150 - [i9]Thomas Bellitto, Tobias Marschall, Alexander Schönhuth, Gunnar W. Klau
Next generation cluster editing. PeerJ Prepr. 3: e1301 (2015) - 2014
- [j20]Armin Töpfer, Tobias Marschall
Viral Quasispecies Assembly via Maximal Clique Enumeration. PLoS Comput. Biol. 10(3) (2014) - [c10]Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads. RECOMB 2014: 237-249 - [c9]Armin Töpfer, Tobias Marschall, Rowena A. Bull
Viral Quasispecies Assembly via Maximal Clique Enumeration. RECOMB 2014: 309-310 - 2013
- [j19]Tobias Marschall
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels. Bioinform. 29(24): 3143-3150 (2013) - [j18]Mohammed El-Kebir
Mapping proteins in the presence of paralogs using units of coevolution. BMC Bioinform. 14(S-15): S18 (2013) - [j17]Manuel Allhoff, Alexander Schönhuth
Discovering motifs that induce sequencing errors. BMC Bioinform. 14(S-5): S1 (2013) - [i8]Ulrich Faigle, Alexander Schönhuth:
Observation and evolution of finite-dimensional Markov systems. CTW 2013: 93-97 - [i7]Thomas Bellitto, Tobias Marschall, Alexander Schönhuth, Gunnar W. Klau:
Next Generation Cluster Editing. CoRR abs/1310.3353 (2013) - 2012
- [j16]Iman Hajirasouliha, Alexander Schönhuth
Mirroring co-evolving trees in the light of their topologies. Bioinform. 28(9): 1202-1208 (2012) - [j15]Tobias Marschall
CLEVER: clique-enumerating variant finder. Bioinform. 28(22): 2875-2882 (2012) - 2011
- [j14]Christoph Hafemeister
Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions. Bioinform. 27(7): 946-952 (2011) - [j13]Ulrich Faigle, Alexander Schönhuth:
Efficient Tests for Equivalence of Hidden Markov Processes and Quantum Random Walks. IEEE Trans. Inf. Theory 57(3): 1746-1753 (2011) - [c8]Ulrich Faigle, Alexander Schönhuth:
Representations of Power Series over Word Algebras. CTW 2011: 154-157 - [i6]Iman Hajirasouliha, Alexander Schönhuth, David de Juan, Alfonso Valencia, Süleyman Cenk Sahinalp:
Mirroring co-evolving trees in the light of their topologies. CoRR abs/1110.5704 (2011) - 2010
- [j12]Phuong Dao, Recep Colak, Raheleh Salari, Flavia Moser, Elai Davicioni
Inferring cancer subnetwork markers using density-constrained biclustering. Bioinform. 26(18) (2010) - [j11]Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp:
Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length. J. Comput. Biol. 17(1): 1-20 (2010) - [j10]Meromit Singer, Dario Boffelli, Joseph Dhahbi, Alexander Schönhuth, Gary P. Schroth, David I. K. Martin, Lior Pachter
MetMap Enables Genome-Scale Methyltyping for Determining Methylation States in Populations. PLoS Comput. Biol. 6(8) (2010) - [c7]Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp:
Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties. WABI 2010: 350-361 - [i5]Ulrich Faigle, Alexander Schönhuth:
Discrete Quantum Markov Chains. CoRR abs/1011.1295 (2010)
2000 – 2009
- 2009
- [j9]Ivan G. Costa
Constrained mixture estimation for analysis and robust classification of clinical time series. Bioinform. 25(12) (2009) - [j8]Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov:
The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study. J. Comput. Biol. 16(2): 159-167 (2009) - [j7]Alexander Schönhuth, Herbert Jaeger:
Characterization of ergodic hidden Markov sources. IEEE Trans. Inf. Theory 55(5): 2107-2118 (2009) - [j6]Alexander Schönhuth:
On analytic properties of entropy rate. IEEE Trans. Inf. Theory 55(5): 2119-2127 (2009) - [c6]Recep Colak, Fereydoun Hormozdiari, Flavia Moser, Alexander Schönhuth, J. Holman, Martin Ester, Süleyman Cenk Sahinalp:
Dense Graphlet Statistics of Protein Interaction and Random Networks. Pacific Symposium on Biocomputing 2009: 178-189 - [c5]Phuong Dao, Alexander Schönhuth, Fereydoun Hormozdiari, Iman Hajirasouliha, Süleyman Cenk Sahinalp, Martin Ester:
Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks. WABI 2009: 37-48 - 2008
- [c4]Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp:
The Relation between Indel Length and Functional Divergence: A Formal Study. WABI 2008: 330-341 - [i4]Alexander Schönhuth:
On analytic properties of entropy rate of discrete random sources. CoRR abs/0804.2469 (2008) - [i3]Alexander Schönhuth:
The ergodic decomposition of asymptotically mean stationary random sources. CoRR abs/0804.2487 (2008) - [i2]Alexander Schönhuth:
A simple and efficient solution of the identifiability problem for hidden Markov sources. CoRR abs/0808.2833 (2008) - 2007
- [j5]Ulrich Faigle, Alexander Schönhuth:
Asymptotic Mean Stationarity of Sources With Finite Evolution Dimension. IEEE Trans. Inf. Theory 53(7): 2342-2348 (2007) - 2006
- [j4]Ulrich Faigle, Alexander Schönhuth:
Quantum Predictor Models. Electron. Notes Discret. Math. 25: 149-155 (2006) - 2005
- [j3]Markus Leber, Lars Kaderali
A fractional programming approach to efficient DNA melting temperature calculation. Bioinform. 21(10): 2375-2382 (2005) - [j2]Ivan G. Costa
The Graphical Query Language: a tool for analysis of gene expression time-courses. Bioinform. 21(10): 2544-2545 (2005) - [j1]Alexander Schliep
Analyzing Gene Expression Time-Courses. IEEE ACM Trans. Comput. Biol. Bioinform. 2(3): 179-193 (2005) - [i1]Ulrich Faigle, Alexander Schönhuth:
Note on Negative Probabilities and Observable Processes. Algorithms for Optimization with Incomplete Information 2005 - 2004
- [c3]Alexander Schliep
Robust inference of groups in gene expression time-courses using mixtures of HMMs. ISMB/ECCB (Supplement of Bioinformatics) 2004: 283-289 - 2003
- [c2]Alexander Schliep, Alexander Schönhuth, Christine Steinhoff:
Using hidden Markov models to analyze gene expression time course data. ISMB (Supplement of Bioinformatics) 2003: 255-263 - 2002
- [c1]P. Pipenbacher, Alexander Schliep, Sebastian Schneckener, Alexander Schönhuth, Dietmar Schomburg, Rainer Schrader:
ProClust: improved clustering of protein sequences with an extended graph-based approach. ECCB 2002: 182-191
Coauthor Index
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last updated on 2024-05-08 21:47 CEST by the dblp team
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