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Szymon M. Kielbasa
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2010 – 2019
- 2019
- [i1]David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2017
- [c5]Peter van't Hof, Szymon M. Kielbasa, Wibowo Arindrarto, Jeroen F. J. Laros, Sander Bollen, Hailiang Mei:
BIOPET: towards Scalable, Maintainable, User-friendly, Robust and Flexible NGS data analysis pipelines. CCGrid 2017: 823-829 - 2010
- [j7]Szymon M. Kielbasa, Nils Blüthgen, Michael Fähling, Ralf Mrowka:
Targetfinder.org: a resource for systematic discovery of transcription factor target genes. Nucleic Acids Res. 38(Web-Server-Issue): 233-238 (2010) - [j6]Szymon M. Kielbasa, Holger Klein, Helge G. Roider, Martin Vingron, Nils Blüthgen:
TransFind - predicting transcriptional regulators for gene sets. Nucleic Acids Res. 38(Web-Server-Issue): 275-280 (2010)
2000 – 2009
- 2005
- [j5]Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel:
Measuring similarities between transcription factor binding sites. BMC Bioinform. 6: 237 (2005) - [j4]Matthias Truss, Maciej Swat, Szymon M. Kielbasa, Reinhold Schäfer, Hanspeter Herzel, Christian Hagemeier:
HuSiDa - the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells. Nucleic Acids Res. 33(Database-Issue): 108-111 (2005) - 2004
- [j3]Nils Blüthgen, Szymon M. Kielbasa, Branka Cajavec, Hanspeter Herzel:
HOMGL - comparing genelists across species and with different accession numbers. Bioinform. 20(1): 125-126 (2004) - [j2]Zhenjun Hu, Yutao Fu, Anason S. Halees, Szymon M. Kielbasa, Zhiping Weng:
SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation. Nucleic Acids Res. 32(Web-Server-Issue): 235-241 (2004) - [c4]Szymon M. Kielbasa, Nils Blüthgen, Hanspeter Herzel:
Genome-wide Analysis of Functions Regulated by Sets of Transcription Factors. German Conference on Bioinformatics 2004: 105-113 - 2003
- [c3]Maciej Swat, Alexander E. Kel, Szymon M. Kielbasa, Hanspeter Herzel:
Modeling the G1/S transition in mammals -Bifurcation an alysis of elementary modules. German Conference on Bioinformatics 2003: 147-152 - 2001
- [j1]Szymon M. Kielbasa, Jan O. Korbel, Dieter Beule, Johannes Schuchhardt, Hanspeter Herzel:
Combining frequency and positional information to predict transcription factor binding sites. Bioinform. 17(11): 1019-1026 (2001) - [c2]E. W. Wolski, Christoph K. Wierling, Thomas Kreitler, Szymon M. Kielbasa, U. Schneider, Johan Gobom, Hans Lehrach, Holger Eickhoff:
Visualization and analysis of gene expression data using freeware and GPL-Software. German Conference on Bioinformatics 2001: 236-237 - 2000
- [c1]Szymon M. Kielbasa, Jan O. Korbel, Dieter Beule, Johannes Schuchhardt, Hanspeter Herzel:
Finding Transcription Factor Binding Sites in Coregulated Genes by Exhaustive Sequence Search. German Conference on Bioinformatics 2000: 55-62
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