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PEARC 2018: Pittsburgh, PA, USA
- Sergiu Sanielevici:
Proceedings of the Practice and Experience on Advanced Research Computing, PEARC 2018, Pittsburgh, PA, USA, July 22-26, 2018. ACM 2018
Facilitation of Advanced Computing Infrastructure
- John-Paul Robinson, Thomas Anthony, Ravi Tripathi, Sara A. Sims
, Kristina M. Visscher
Analyzing the Human Connectome Project Datasets using GPUs: The Anatomy of a Science Engagement. 1:1-1:6 - Yige Wang, Ruizhu Huang, Weijia Xu:
Authentication with User Driven Web Application for Accessing Remote Resources. 2:1-2:7 - Joseph P. White
Automatic Characterization of HPC Job Parallel Filesystem I/O Patterns. 3:1-3:8 - Sean B. Cleveland
Building Science Gateway Infrastructure in the Middle of the Pacific and Beyond: Experiences using the Agave Deployer and Agave Platform to Build Science Gateways. 4:1-4:8 - Joe Breen, Lincoln Bryant, Gabriele Carcassi, Jiahui Chen, Robert W. Gardner, Ryan Harden, Martin Izdimirski, Robert Killen, Ben Kulbertis, Shawn McKee
Building the SLATE Platform. 5:1-5:7 - Zebula Sampedro, Aaron Holt, Thomas Hauser
Continuous Integration and Delivery for HPC: Using Singularity and Jenkins. 6:1-6:6 - Mami Hayashida, P. Sergio Rivera, James Griffioen, Zongming Fei, Yongwook Song:
Debugging SDN in HPC Environments. 7:1-7:8 - Andrea Zonca, Robert S. Sinkovits
Deploying Jupyter Notebooks at scale on XSEDE resources for Science Gateways and workshops. 8:1-8:7 - Benedikt Riedel, Boris Bauermeister, Lincoln Bryant, Jan Conrad, Patrick de Perio, Robert W. Gardner, Luca Grandi, Francesco Lombardi
Distributed Data and Job Management for the XENON1T Experiment. 9:1-9:8 - Fugang Wang, Gregor von Laszewski
Evaluating the Scientific Impact of XSEDE. 10:1-10:8 - Pankaj Saha, Angel Beltre, Piotr Uminski, Madhusudhan Govindaraju:
Evaluation of Docker Containers for Scientific Workloads in the Cloud. 11:1-11:8 - Jonathon Anderson, Thomas Hauser
Federating Identity Management for a Regional HPC Resource. 12:1-12:6 - Evan F. Bollig
From Bare Metal to Virtual: Lessons Learned when a Supercomputing Institute Deploys its First Cloud. 13:1-13:8 - Rachana Ananthakrishnan, Ben Blaiszik
Globus Platform Services for Data Publication. 14:1-14:7 - Suchandra Thapa, Robert W. Gardner, Kenneth Richard Herner, Dirk Hufnagel, David Lesny, Mats Rynge
Homogenizing OSG and XSEDE: Providing Access to XSEDE Allocations through OSG Infrastructure. 15:1-15:7 - Mehmet Belgin, Trever C. Nightingale, David A. Mercer, Fang (Cherry) Liu
ICE: A Federated Instructional Cluster Environment for Georgia Tech. 16:1-16:7 - Michael B. Milligan
Jupyter as Common Technology Platform for Interactive HPC Services. 17:1-17:6 - Evan F. Bollig
Leveraging OpenStack and Ceph for a Controlled-Access Data Cloud. 18:1-18:7 - Scott A. Valcourt:
Major Factors in Science DMZ Deployment at Small Institutions. 19:1-19:8 - Anita M. Orendt, Erin Shaw:
Measuring the Impact of Facilitation Effort. 20:1-20:7 - Jeremy Fischer
Methodologies and practices for adoption of a novel national research environment. 21:1-21:7 - P. Sergio Rivera, James Griffioen, Zongming Fei, Mami Hayashida, Pinyi Shi, Bhushan Chitre, Jacob Chappell, Yongwook Song, Lowell Pike, Charles Carpenter, Hussamuddin Nasir:
Navigating the Unexpected Realities of Big Data Transfers in a Cloud-based World. 22:1-22:8 - Trey Dockendorf, Douglas Johnson, Troy Baer:
Scaling Puppet and Foreman for HPC. 23:1-23:6 - Alex Withers, Brian Bockelman
SciTokens: Capability-Based Secure Access to Remote Scientific Data. 24:1-24:8 - Nikolay A. Simakov, Robert L. DeLeon, Martins D. Innus, Matthew D. Jones, Joseph P. White, Steven M. Gallo, Abani K. Patra, Thomas R. Furlani
Slurm Simulator: Improving Slurm Scheduler Performance on Large HPC systems by Utilization of Multiple Controllers and Node Sharing. 25:1-25:8 - Jeremy W. Nicklas, Douglas Johnson, Shameema Oottikkal, Eric Franz, Brian McMichael, Alan Chalker
Supporting distributed, interactive Jupyter and RStudio in a scheduled HPC environment with Spark using Open OnDemand. 26:1-26:8 - Maxwell Burnette
TERRA-REF Data Processing Infrastructure. 27:1-27:7 - Rion Dooley, Steven R. Brandt, John M. Fonner:
The Agave Platform: An Open, Science-as-a-Service Platform for Digital Science. 28:1-28:8 - Larry Smarr, Camille Crittenden, Thomas A. DeFanti, John Graham, Dmitry Mishin
The Pacific Research Platform: Making High-Speed Networking a Reality for the Scientist. 29:1-29:8 - Lincoln Bryant, Jeremy Van, Benedikt Riedel, Robert W. Gardner, Jose Caballero Bejar, John Hover, Ben Tovar
VC3: A Virtual Cluster Service for Community Computation. 30:1-30:8 - W. Cyrus Proctor, Mike Packard, Anagha Jamthe, Richard Cardone, Joseph Stubbs
Virtualizing the Stampede2 Supercomputer with Applications to HPC in the Cloud. 31:1-31:6 - Richard H. Grant, Stuart D. Smith, Stephen Lien Harrell
Windows-based Workflows on Linux-based Beowulf Clusters. 32:1-32:5
Applications of Advanced Computing Infrastructure
- Ruizhu Huang, Weijia Xu, Silvia Liverani, Dave Hiltbrand, Ann E. Stapleton:
A Case Study of R Performance Analysis and Optimization. 33:1-33:6 - Kang-Pyo Lee, Spencer J. Kuhl, Henry Jeremy Bockholt, Benjamin P. Rogers, Daniel A. Reed:
A Cloud-Based Scientific Gateway for Internet of Things Data Analytics. 34:1-34:8 - Guangchen Ruan, Tassie Gniady, David Kloster, Eric A. Wernert, Esen Tuna:
A Computational Notebook Approach to Large-scale Text Analysis: Balancing Accessibility with Scalability. 35:1-35:8 - Mark S. Hisle, Maxwell S. Meier, David M. Toth:
Accelerating AutoDock Vina with Containerization. 36:1-36:5 - Dave Turner, Dan Andresen, Kyle Hutson, Adam Tygart:
Application Performance on the Newest Processors and GPUs. 37:1-37:7 - Sandeep Puthanveetil Satheesan
Brown Dog: Making the Digital World a Better Place, a Few Files at a Time. 38:1-38:8 - Zhong Wang, Marcus A. Christie, Eroma Abeysinghe, Tinyi Chu, Suresh Marru, Marlon E. Pierce
Building a Science Gateway For Processing and Modeling Sequencing Data Via Apache Airavata. 39:1-39:7 - Luigi Marini, Indira Gutierrez-Polo, Rob Kooper, Sandeep Puthanveetil Satheesan
Clowder: Open Source Data Management for Long Tail Data. 40:1-40:8 - Yu Li, Xiaohong Zhang, Ashwin Trikuta Srinath, Rachel B. Getman, Linh Bao Ngo:
Combining HPC and Big Data Infrastructures in Large-Scale Post-Processing of Simulation Data: A Case Study. 41:1-41:7 - Olesya Sarajlic, Xiaochun He
Computational Challenges and Opportunities of Simulating Cosmic Ray Showers at Global Scale. 42:1-42:7 - Maxim Belkin, Roland Haas
Container solutions for HPC Systems: A Case Study of Using Shifter on Blue Waters. 43:1-43:8 - Eric Shook, Davide Del Vento, Andrea Zonca, Jun Wang:
GISandbox: A Science Gateway for Geospatial Computing. 44:1-44:7 - Guangchen Ruan, Eric A. Wernert, Tassie Gniady, Esen Tuna, William R. Sherman:
High Performance Photogrammetry for Academic Research. 45:1-45:8 - Larry L. Biehl, Lan Zhao, Carolyn Ellis
Introducing Research Concepts to Middle School Students via a Geospatial Science Gateway. 46:1-46:5 - Eduardo Ponce, Brittany Stephenson, Suzanne M. Lenhart, Judy Day
PaPaS: A Portable, Lightweight, and Generic Framework for Parallel Parameter Studies. 47:1-47:8 - Liya Wang, Zhenyuan Lu, Peter Van Buren, Doreen Ware:
SciApps: a Bioinformatics Workflow Platform Powered by XSEDE and CyVerse. 48:1-48:5 - Don Krieger, Paul Shepard, Ben Zusman, Anirban Jana, David O. Okonkwo:
Seamless Utilization of Heterogeneous XSede Resources to Accelerate Processing of a High Value Functional Neuroimaging Dataset. 49:1-49:8 - Kyle Levi
Searching the Sequence Read Archive using Jetstream and Wrangler. 50:1-50:7 - Sorin Adam Matei
Social Media Modeling of Human Behavior in Natural Emergencies. 51:1-51:8 - Subhashini Sivagnanam, Kenneth Yoshimoto
The Neuroscience Gateway: Enabling Large Scale Modeling and Data Processing in Neuroscience. 52:1-52:7 - Nancy Wilkins-Diehr, Michael G. Zentner, Marlon E. Pierce
The Science Gateways Community Institute at Two Years. 53:1-53:8 - Manu Shantharam, Mahidhar Tatineni, Dong Ju Choi, Amitava Majumdar:
Understanding I/O Bottlenecks and Tuning for High Performance I/O on Large HPC Systems: A Case Study. 54:1-54:6 - James C. Phillips
What You Should Know About NAMD and Charm++ But Were Hoping to Ignore. 55:1-55:6
Visualization and Data Analytics
- Ishtar Nyawira, Kristi Bushman:
A Simplified Approach to Deep Learning for Image Segmentation. 56:1-56:8 - Yanzhe Cheng, Fang (Cherry) Liu, Shan Jing, Weijia Xu, Duen Horng Chau
Building Big Data Processing and Visualization Pipeline through Apache Zeppelin. 57:1-57:7 - Dawei Mu, Pietro Cicotti, Yifeng Cui, En-Jui Lee
Deep Learning for Seismic Template Recognition. 58:1-58:6 - Zhe Zhang, Brian Bockelman, Derek Weitzel
Discovering Job Preemptions in the Open Science Grid. 59:1-59:8 - Andrea L. Ogier, Anne M. Brown, Jonathan L. Petters
Enhancing Collaboration Across the Research Ecosystem: Using Libraries as Hubs for Discipline-Specific Data Experts. 60:1-60:6 - Rajiv Khadka
Evaluation of Scientific Workflow Effectiveness for a Distributed Multi-User Multi-Platform Support System for Collaborative Visualization. 61:1-61:8 - James H. Money, Marko Sterbentz, Nathan Morrical, Thomas Szewczyk, Landon Woolley:
GPGPU Enabled Ray Directed Adaptive Volume Visualization for High Density Scans. 62:1-62:7 - William R. Sherman, James H. Money, Eric T. Whiting
IQ-Stations: Advances in State-of-the-Art Low Cost Immersive Displays for Research and Development. 63:1-63:5 - XiaoPeng Lu, Jiaming Qu, YongXing Jiang, Yanbing Zhao:
Should I Invest it?: Predicting Future Success of Yelp Restaurants. 64:1-64:6 - Ishtar Nyawira, Kristi Bushman, Iris Qian, Annie Zhang:
Understanding Neural Pathways in Zebrafish through Deep Learning and High Resolution Electron Microscope Data. 65:1-65:8
Workforce Development and Diversity
- Susan Mehringer
Creating Effective Online Training Videos from Live Training Event Recordings. 66:1-66:6 - Derek L. Morris III, Matthew D. Hill, Lilshay M. Rogers, Alma D. Salisbury, Hagen C. Hodgkins, Sincere J. Ponton, Linda B. Hayden, Jeffrey A. Wood:
Establishing Paradigms for Modifying and Developing the Workforce Development Section of the Science Gateways Community Institute Site. 67:1-67:4 - Erin Shaw, Cesar Sul:
Evaluation of ACI Training on User Preparedness. 68:1-68:6 - Benjamin P. Rogers, Gabriella A. Perez:
Facilitating Technical Compliance Through the Development of a New IT Role. 69:1-69:7 - Stephen Lien Harrell
Mentoring Undergraduates into Cyber-Facilitator Roles. 70:1-70:7 - Henry Neeman, Hussein M. Al-Azzawi, Aaron Bergstrom, Zoe K. Braiterman, Dana Brunson
Progress Update on the Development and Implementation of the Advanced Cyberinfrastructure Research & Education Facilitators Virtual Residency Program. 71:1-71:7 - Jason C. Christopher, Aaron Culich, Quinn Dombrowski, Debra McCaffrey
Research Facilitation on a Budget. 72:1-72:5 - Kelly P. Gaither, Rosalia Gomez
The Role Cultural Competency Plays in Teaching Data Science. 73:1-73:7 - Hannah K. Ricketts, Alexa M. Salsbury, David R. Bevan, Anne M. Brown:
Using Immersive Visualization Environments to Engage Students in Hands-On Learning. 74:1-74:5 - Craig A. Stewart, Marion Krefeldt:
Your Good Health is a Workforce Issue. 75:1-75:8
Posters
- Yinzhi Wang
A New Science Gateway to Provide Decision Support on Carbon Capture and Storage Technologies. 76:1-76:3 - Noah Howard, Nicholas Colella, Kasey Legaard, Saritha Nellutla, Evan McCoy, Larry Whitsel, Chris Wilson, Bruce Segee:
Adventures of Two Student Research Computing Facilitators. 77:1-77:4 - Harsha Phulwani, Madrina Thapa, Suresh Marru, Marlon E. Pierce
Apache Airavata Resource Allocation System: A Tool for Allocating Resources in Science Gateways. 78:1-78:4 - Sean Deitrich, Jacob Czech, Alexander Ropelewski, Arthur W. Wetzel, Greg Hood, Derek Simmel, Marcel Bruchez, Simon C. Watkins
Applying iRODS to the Brain Image Library. 79:1-79:4 - Megan F. McCracken:
Artificial Neural Networks in Fluid Dynamics: A Novel Approach to the Navier-Stokes Equations. 80:1-80:4 - Samuel Cupp
Automated synchronization and boundary condition application for the Cactus Framework. 81:1-81:3 - Judith D. Gardiner, Karen A. Tomko
Code Optimization and Stabilization for a High-Resolution Terrain Generation Application. 82:1-82:3 - Manal Bayousef
Computational Investigations of Optimal Scrambled Halton Sequences. 83:1-83:4 - Kevin Dice, Cortez Gray, George Walker, Cody Baldwin, Daniel Andresen:
CUDA-Accelerated Simulation of Brownian Dynamics. 84:1-84:3 - Amirhessam Tahmassebi, Amir H. Gandomi
Deep Learning in Medical Imaging: fMRI Big Data Analysis via Convolutional Neural Networks. 85:1-85:4 - Stephen Paul Adithela, Marcus Christie, Suresh Marru, Marlon E. Pierce
Django Content Management System Evaluation and Integration with Apache Airavata. 86:1-86:4 - Sachin Kariyattin, Suresh Marru, Marlon E. Pierce
Evaluating NextCloud as a File Storage for Apache Airavata. 87:1-87:4 - Yehia Arafa, Atanu Barai
Evaluating the Fault Tolerance Performance of HDFS and Ceph. 88:1-88:3 - Nitin Sukhija, Arun K. Datta, Sonny Sevin, Eric Coulter:
Grid Technology for Supporting Health Education and Measuring the Health Outcome. 89:1-89:4 - Beth Lynn Eicher, Steven Solomon, Shawn Hall:
High Performance Computing Evaluate And Plan. 90:1-90:3 - Meysam Ghaffari, Judith Wang:
Integrating Travel and Epidemic Models through Computational Analysis. 91:1-91:3 - Temilola Aderibigbe, Hongmei Chi:
Investigation of Florida Housing Prices using Predictive Time Series Model. 92:1-92:4 - Rob Light, Alina Banerjee, Ester Soriano:
Managing Allocations on Your Research Resources?: XRAS is here to help! 93:1-93:4 - Cameron W. Smith, Eroma Abeysinghe, Suresh Marru, Kenneth E. Jansen
PHASTA Science Gateway for High Performance Computational Fluid Dynamics. 94:1-94:4 - Karen Canas, Brandon Ubiera, Xinlian Liu, Yanling Liu:
Scalable Biomedical Image Synthesis with GAN. 95:1-95:3 - Semir Sarajlic, Julien Chastang, Suresh Marru, Jeremy Fischer
Scaling JupyterHub Using Kubernetes on Jetstream Cloud: Platform as a Service for Research and Educational Initiatives in the Atmospheric Sciences. 96:1-96:4 - Joseph D. Madison, Eroma Abeysinghe, Sudhakar Pamidighantam
Science Gateway Implementation at the University of South Dakota: Applications in Research and Education. 97:1-97:4 - Sai Susheel Sunkara, Chet Langin, Marlon E. Pierce
Simplifying Access to Campus Resources at Southern Illinois University with a Science Gateway. 98:1-98:4 - Marlon E. Pierce
Supporting Science Gateways Using Apache Airavata and SciGaP Services. 99:1-99:4 - Eroma Abeysinghe, Michal Brylinski, Marcus Christie, Suresh Marru, Marlon E. Pierce
The CSBG - LSU Gateway: Web based Hosted Gateway for Computational System Biology Application Tools from Louisiana State University. 100:1-100:4 - Zachariah Miller, Nitin Sukhija, Ritu Arora, Alexander Gessinger:
Towards a Parallel User Tool (ParDP) for Automatic Data Partitioning of Relational Databases. 101:1-101:3 - Nathan M. Wilson, Suresh Marru, Eroma Abeysinghe, Marcus A. Christie, Gabriel D. Maher, Adam R. Updegrove, Marlon E. Pierce
Using a Science Gateway to Deliver SimVascular Software as a Service for Classroom Instruction. 102:1-102:4 - Huan Chen, Chris Fietkiewicz:
Version Control Graphical Interface for Open OnDemand. 103:1-103:4
Visualization Showcase
- Greg Foss, An Nguyen, Victor Ocaña, Patrick Heimbach
Arctic Ocean-Sea Ice Interactions. 104:1-104:2 - Greg Foss, Andrew J. Solis
Plasma Simulation Data Through the Hololens. 105:1-105:2 - David Bock, Brian F. Jewett:
Visual Representation of the Joplin Tornadic Storm. 106:1-106:3 - Som Dutta, Mark W. Van Moer
Visualization of the Bulle-Effect at River Bifurcations. 107:1-107:4 - Greg Foss, Wendell Horton, Lee Leonard:
Visualizations of Mistral and Tri Alpha Plasmas. 108:1-108:2
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