The CSBG - LSU Gateway: Web based Hosted Gateway for Computational System Biology Application Tools from Louisiana State University
Authors: 
Eroma Abeysinghe, Michal Brylinski, Marcus Christie, 
Suresh Marru, Marlon PierceAuthors Info & Claims
Article No.: 100, Pages 1 - 4
Abstract
Science gateways are identified as an effective way to publish and distribute software for research communities without the burden of learning HPC (High Performance Computer) systems. In the past, researchers were expected to have in-depth knowledge about using HPC systems for computations along with their respective science field in order to do effective research. Science gateways eliminate the need to learn HPC systems and allows the research communities to focus more on their science and let the gateway handle communicating with HPCs. In this poster we are presenting the science gateway project of CSBG (Computational System Biology Group - www.brylinski.org) of Department of Biological Sciences with Center for Computation & Technology at LSU (Louisiana State University). The gateway project was initiated in order to provide CSBG software tools as a service through a science gateway.
References
[1]
Jim Basney, Terry Fleury, and Jeff Gaynor. 2014. CILogon: A federated X. 509 certification authority for cyberinfrastructure logon. Concurrency and Computation: Practice and Experience 26, 13 (2014), 2225--2239.
[2]
Marcus A Christie, Anuj Bhandar, Supun Nakandala, Suresh Marru, Eroma Abeysinghe, Sudhakar Pamidighantam, and Marlon E Pierce. 2017. Using Keycloak for Gateway Authentication and Authorization. (2017).
[3]
Thejaka Amila Kanewala, Suresh Marru, Jim Basney, and Marlon Pierce. 2014. A credential store for multi-tenant science gateways. In Cluster, Cloud and Grid Computing (CCGrid), 2014 14th IEEE/ACM International Symposium on. IEEE, 445--454.
[4]
Katherine A Lawrence, Michael Zentner, Nancy Wilkins-Diehr, Julie A Wernert, Marlon Pierce, Suresh Marru, and Scott Michael. 2015. Science gateways today and tomorrow: positive perspectives of nearly 5000 members of the research community. Concurrency and Computation: Practice and Experience 27, 16 (2015), 4252--4268.
[5]
Suresh Marru, Lahiru Gunathilake, Chathura Herath, Patanachai Tangchaisin, Marlon Pierce, Chris Mattmann, Raminder Singh, Thilina Gunarathne, Eran Chinthaka, Ross Gardler, et al. 2011. Apache airavata: a framework for distributed applications and computational workflows. In Proceedings of the 2011 ACM workshop on Gateway computing environments. ACM, 21--28.
[6]
Supun Nakandala, Suresh Marru, Marlon Piece, Sudhakar Pamidighantam, Kenneth Yoshimoto, Terri Schwartz, Subhashini Sivagnanam, Amit Majumdar, and Mark A Miller. 2017. Apache Airavata Sharing Service: A Tool for Enabling User Collaboration in Science Gateways. In Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact. ACM, 20.
[7]
Marlon Pierce, Suresh Marru, Mark A Miller, Amit Majumdar, and Borries Demeler. 2013. Science Gateway Operational Sustainability: Adopting a Platform-as-a Service Approach. Technical Report.
Index Terms
- The CSBG - LSU Gateway: Web based Hosted Gateway for Computational System Biology Application Tools from Louisiana State University
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Association for Computing Machinery
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Published: 22 July 2018
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- Refereed limited
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PEARC '18
PEARC '18: Practice and Experience in Advanced Research Computing
July 22 - 26, 2018
PA, Pittsburgh, USA
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PEARC '18 Paper Acceptance Rate 79 of 123 submissions, 64%;
Overall Acceptance Rate 133 of 202 submissions, 66%
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