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Thanasis Vergoulis

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affiliation: Athena Research and Innovation Center, IMSI, Athens, Greece

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2020 – today

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2023
[c30]
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Paris Koloveas, Serafeim Chatzopoulos, Christos Tryfonopoulos, Thanasis Vergoulis:
BIP! NDR (NoDoiRefs): A Dataset of Citations from Papers Without DOIs in Computer Science Conferences and Workshops. TPDL 2023: 99-105
[c29]
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Serafeim Chatzopoulos, Kleanthis Vichos, Ilias Kanellos, Thanasis Vergoulis:
Piloting Topic-Aware Research Impact Assessment Features in BIP! Services. ESWC (Satellite Events) 2023: 81-85
[c28]
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Angelo Antonio Salatino, Yi Bu, Ying Ding, Ágnes Horvát, Yong Huang, Meijun Liu, Paolo Manghi, Andrea Mannocci, Francesco Osborne, Daniel M. Romero, Dimitris Sacharidis, Misha Teplitskiy, Thanasis Vergoulis, Feng Xia, Yujia Zhai:
3rd International Workshop on Scientific Knowledge Representation, Discovery, and Assessment (Sci-K 2023). WWW (Companion Volume) 2023: 783
[c27]
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Serafeim Chatzopoulos, Thanasis Vergoulis, Dimitrios Skoutas, Theodore Dalamagas, Christos Tryfonopoulos, Panagiotis Karras:
Atrapos: Real-time Evaluation of Metapath Query Workloads. WWW 2023: 2487-2498
[i8]
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  - journals/corr/abs-2305-06047
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Serafeim Chatzopoulos, Kleanthis Vichos, Ilias Kanellos, Thanasis Vergoulis:
Piloting topic-aware research impact assessment features in BIP! Services. CoRR abs/2305.06047 (2023)
[i7]
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Paris Koloveas, Serafeim Chatzopoulos, Christos Tryfonopoulos, Thanasis Vergoulis:
BIP! NDR (NoDoiRefs): A Dataset of Citations From Papers Without DOIs in Computer Science Conferences and Workshops. CoRR abs/2307.12794 (2023)
2022
[j22]
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Serafeim Chatzopoulos, Thanasis Vergoulis, Theodore Dalamagas, Christos Tryfonopoulos:
VeTo+: improved expert set expansion in academia. Int. J. Digit. Libr. 23(1): 57-75 (2022)
[c26]
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Anargiros Tzerefos, Ilias Kanellos, Serafeim Chatzopoulos, Theodore Dalamagas, Thanasis Vergoulis:
SurvAnnT: Facilitating Community-Led Scientific Surveys and Annotations. TPDL 2022: 543-547
[c25]
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Kleanthis Vichos, Michele De Bonis, Ilias Kanellos, Serafeim Chatzopoulos, Claudio Atzori, Natalia Manola, Paolo Manghi, Thanasis Vergoulis:
A Preliminary Assessment of the Article Deduplication Algorithm Used for the OpenAIRE Research Graph. IRCDL 2022
[c24]
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Thanasis Vergoulis, Serafeim Chatzopoulos, Kleanthis Vichos, Ilias Kanellos, Andrea Mannocci, Natalia Manola, Paolo Manghi:
BIP! scholar: a service to facilitate fair researcher assessment. JCDL 2022: 42
[c23]
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Riccardo Tommasini, Senjuti Basu Roy, Xuan Wang, Hongwei Wang, Heng Ji, Jiawei Han, Preslav Nakov, Giovanni Da San Martino, Firoj Alam, Markus Schedl, Elisabeth Lex, Akash Bharadwaj, Graham Cormode, Milan Dojchinovski, Jan Forberg, Johannes Frey, Pieter Bonte, Marco Balduini, Matteo Belcao, Emanuele Della Valle, Junliang Yu, Hongzhi Yin, Tong Chen, Haochen Liu, Yiqi Wang, Wenqi Fan, Xiaorui Liu, Jamell Dacon, Lingjuan Lye, Jiliang Tang, Aristides Gionis, Stefan Neumann, Bruno Ordozgoiti, Simon Razniewski, Hiba Arnaout, Shrestha Ghosh, Fabian M. Suchanek, Lingfei Wu, Yu Chen, Yunyao Li, Bang Liu, Filip Ilievski, Daniel Garijo, Hans Chalupsky, Pedro A. Szekely, Ilias Kanellos, Dimitris Sacharidis, Thanasis Vergoulis, Nurendra Choudhary, Nikhil Rao, Karthik Subbian, Srinivasan H. Sengamedu, Chandan K. Reddy, Friedhelm Victor, Bernhard Haslhofer, George Katsogiannis-Meimarakis, Georgia Koutrika, Shengmin Jin, Danai Koutra, Reza Zafarani, Yulia Tsvetkov, Vidhisha Balachandran, Sachin Kumar, Xiangyu Zhao, Bo Chen, Huifeng Guo, Yejing Wang, Ruiming Tang, Yang Zhang, Wenjie Wang, Peng Wu, Fuli Feng, Xiangnan He:
Accepted Tutorials at The Web Conference 2022. WWW (Companion Volume) 2022: 391-399
[c22]
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Paolo Manghi, Andrea Mannocci, Francesco Osborne, Dimitris Sacharidis, Angelo A. Salatino, Thanasis Vergoulis:
Sci-K 2022 - International Workshop on Scientific Knowledge: Representation, Discovery, and Assessment. WWW (Companion Volume) 2022: 735-738
[i6]
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  - journals/corr/abs-2201-04058
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Serafeim Chatzopoulos, Thanasis Vergoulis, Dimitrios Skoutas, Theodore Dalamagas, Christos Tryfonopoulos, Panagiotis Karras:
ATRAPOS: Evaluating Metapath Query Workloads in Real Time. CoRR abs/2201.04058 (2022)
[i5]
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  - journals/corr/abs-2205-03152
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Thanasis Vergoulis, Serafeim Chatzopoulos, Kleanthis Vichos, Ilias Kanellos, Andrea Mannocci, Natalia Manola, Paolo Manghi:
BIP! Scholar: A Service to Facilitate Fair Researcher Assessment. CoRR abs/2205.03152 (2022)
2021
[j21]
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Paolo Manghi, Andrea Mannocci, Francesco Osborne, Dimitris Sacharidis, Angelo A. Salatino, Thanasis Vergoulis:
New trends in scientific knowledge graphs and research impact assessment. Quant. Sci. Stud. 2(4): 1296-1300 (2021)
[j20]
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Thanasis Vergoulis, Ilias Kanellos, Serafeim Chatzopoulos, Danae Pla Karidi, Theodore Dalamagas:
BIP4COVID19: Releasing impact measures for articles relevant to COVID-19. Quant. Sci. Stud. 2(4): 1447-1465 (2021)
[j19]
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Serafeim Chatzopoulos, Thanasis Vergoulis, Ilias Kanellos, Theodore Dalamagas, Christos Tryfonopoulos:
Further improvements on estimating the popularity of recently published papers. Quant. Sci. Stud. 2(4): 1529-1550 (2021)
[j18]
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Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Yannis Vassiliou:
Impact-Based Ranking of Scientific Publications: A Survey and Experimental Evaluation. IEEE Trans. Knowl. Data Eng. 33(4): 1567-1584 (2021)
[c21]
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Giannis Mouchakis, Babis Kostopoulos, Stasinos Konstantopoulos, Ilias Kanellos, Anargiros Tzerefos, Thanasis Vergoulis, Thodoris Dalamagas:
A Cloud-Native NGS Data Processing and Annotation Platform. Poly/DMAH@VLDB 2021: 121-132
[c20]
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Serafeim Chatzopoulos, Thanasis Vergoulis, Panagiotis Deligiannis, Dimitrios Skoutas, Theodore Dalamagas, Christos Tryfonopoulos:
SciNeM: A Scalable Data Science Tool for Heterogeneous Network Mining. EDBT 2021: 654-657
[c19]
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Thanasis Vergoulis, Ilias Kanellos, Giorgos Giannopoulos, Theodore Dalamagas:
Simplifying Impact Prediction for Scientific Articles. EDBT/ICDT Workshops 2021
[c18]
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Konstantinos Zagganas, Maria Lioli, Thanasis Vergoulis, Theodore Dalamagas:
Simplifying p-value calculation for the unbiased microRNAenrichment analysis, using ML-techniques. EDBT/ICDT Workshops 2021
[c17]
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Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Yannis Vassiliou:
Ranking Papers by their Short-Term Scientific Impact. ICDE 2021: 1997-2002
[c16]
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Serafeim Chatzopoulos, Thanasis Vergoulis, Theodore Dalamagas, Christos Tryfonopoulos:
VeTo-web: A Recommendation Tool for the Expansion of Sets of Scholars. JCDL 2021: 334-335
[c15]
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  - conf/ssdbm/VergoulisZKRSD21
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Thanasis Vergoulis, Konstantinos Zagganas, Loukas Kavouras, Martin Reczko, Stelios Sartzetakis, Theodore Dalamagas:
SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines. SSDBM 2021: 243-247
[c14]
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Thanasis Vergoulis, Ilias Kanellos, Claudio Atzori, Andrea Mannocci, Serafeim Chatzopoulos, Sandro La Bruzzo, Natalia Manola, Paolo Manghi:
BIP! DB: A Dataset of Impact Measures for Scientific Publications. WWW (Companion Volume) 2021: 456-460
[c13]
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  - conf/www/DeligiannisVCT21
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Panagiotis Deligiannis, Thanasis Vergoulis, Serafeim Chatzopoulos, Christos Tryfonopoulos:
Visualising Scientific Topic Evolution. WWW (Companion Volume) 2021: 468-472
[p1]
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  - books/sp/21/KanellosVS21
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Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis:
Ranking Papers by Expected Short-Term Impact. Predicting the Dynamics of Research Impact 2021: 89-121
[e2]
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Yannis Manolopoulos, Thanasis Vergoulis:
Predicting the Dynamics of Research Impact. Springer 2021, ISBN 978-3-030-86667-9 [contents]
[i4]
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  - journals/corr/abs-2101-12001
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Thanasis Vergoulis, Ilias Kanellos, Claudio Atzori, Andrea Mannocci, Serafeim Chatzopoulos, Sandro La Bruzzo, Natalia Manola, Paolo Manghi:
BIP! DB: A Dataset of Impact Measures for Scientific Publications. CoRR abs/2101.12001 (2021)
[i3]
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  - journals/corr/abs-2103-13138
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Thanasis Vergoulis, Konstantinos Zagganas, Loukas Kavouras, Martin Reczko, Stelios Sartzetakis, Theodore Dalamagas:
SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines. CoRR abs/2103.13138 (2021)
2020
[j17]
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Serafeim Chatzopoulos, Kostas Patroumpas, Alexandros Zeakis, Thanasis Vergoulis, Dimitrios Skoutas:
SPHINX: A System for Metapath-based Entity Exploration in Heterogeneous Information Networks. Proc. VLDB Endow. 13(12): 2913-2916 (2020)
[c12]
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  - conf/adbis/BellatrecheBBBC20
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Ladjel Bellatreche, Fadila Bentayeb, Mária Bieliková, Omar Boussaid, Barbara Catania, Paolo Ceravolo, Elena Demidova, Mírian Halfeld Ferrari, María Teresa Gómez-López, Carmem S. Hara, Slavica Kordic, Ivan Lukovic, Andrea Mannocci, Paolo Manghi, Francesco Osborne, Christos Papatheodorou, Sonja Ristic, Dimitris Sacharidis, Oscar Romero, Angelo A. Salatino, Guilaine Talens, Maurice van Keulen, Thanasis Vergoulis, Maja Zumer:
Databases and Information Systems in the AI Era: Contributions from ADBIS, TPDL and EDA 2020 Workshops and Doctoral Consortium. ADBIS/TPDL/EDA Workshops 2020: 3-20
[c11]
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Serafeim Chatzopoulos, Thanasis Vergoulis, Ilias Kanellos, Theodore Dalamagas, Christos Tryfonopoulos:
ArtSim: Improved Estimation of Current Impact for Recent Articles. ADBIS/TPDL/EDA Workshops 2020: 323-334
[c10]
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Thanasis Vergoulis, Serafeim Chatzopoulos, Theodore Dalamagas, Christos Tryfonopoulos:
VeTo: Expert Set Expansion in Academia. TPDL 2020: 48-61
[c9]
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Konstantinos Zagganas, Thanasis Vergoulis, Spiros Skiadopoulos, Theodore Dalamagas:
Efficient Calculation of Empirical P-values for Association Testing of Binary Classifications. SSDBM 2020: 10:1-10:12
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Elaheh Pourabbas, Dimitris Sacharidis, Kurt Stockinger, Thanasis Vergoulis:
SSDBM 2020: 32nd International Conference on Scientific and Statistical Database Management, Vienna, Austria, July 7-9, 2020. ACM 2020, ISBN 978-1-4503-8814-6 [contents]
[i2]
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  - journals/corr/abs-2006-00951
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Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Yannis Vassiliou:
Ranking Papers by their Short-Term Scientific Impact. CoRR abs/2006.00951 (2020)
[i1]
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  - journals/corr/abs-2012-15192
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Thanasis Vergoulis, Ilias Kanellos, Giorgos Giannopoulos, Theodore Dalamagas:
Simplifying Impact Prediction for Scientific Articles. CoRR abs/2012.15192 (2020)

2010 – 2019

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2019
[c8]
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Thanasis Vergoulis, Serafeim Chatzopoulos, Ilias Kanellos, Panagiotis Deligiannis, Christos Tryfonopoulos, Theodore Dalamagas:
BIP! Finder: Facilitating Scientific Literature Search by Exploiting Impact-Based Ranking. CIKM 2019: 2937-2940
[c7]
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Thanasis Vergoulis, Ilias Kanellos, Anargiros Tzerefos, Serafeim Chatzopoulos, Theodore Dalamagas, Spiros Skiadopoulos:
A Study on the Readability of Scientific Publications. TPDL 2019: 136-144
[c6]
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Serafeim Chatzopoulos, Panagiotis Deligiannis, Thanasis Vergoulis, Ilias Kanellos, Christos Tryfonopoulos, Theodore Dalamagas:
SciTo Trends: Visualising Scientific Topic Trends. TPDL 2019: 393-396
2018
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  - journals/nar/KaragkouniPCVTK18
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Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. Nucleic Acids Res. 46(Database-Issue): D239-D245 (2018)
2017
[j15]
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Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ioannis S. Vlachos, Spiros Skiadopoulos, Theodore Dalamagas:
BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets. BMC Bioinform. 18(1): 399:1-399:8 (2017)
2016
[j14]
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Georgios K. Georgakilas, Ioannis S. Vlachos, Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ilias Kanellos, Panayiotis Tsanakas, Dimitris Dellis, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. Nucleic Acids Res. 44(Database-Issue): 190-195 (2016)
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios K. Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. Nucleic Acids Res. 44(Database-Issue): 231-238 (2016)
[j12]
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Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios K. Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. Nucleic Acids Res. 44(Webserver-Issue): W128-W134 (2016)
2015
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Thanasis Vergoulis, Ilias Kanellos, Nikos Kostoulas, Georgios K. Georgakilas, Timos K. Sellis, Artemis G. Hatzigeorgiou, Theodore Dalamagas:
mirPub: a database for searching microRNA publications. Bioinform. 31(9): 1502-1504 (2015)
[j10]
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Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios K. Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions. Nucleic Acids Res. 43(Database-Issue): 153-159 (2015)
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Ioannis S. Vlachos, Konstantinos Zagganas, Maria D. Paraskevopoulou, Georgios K. Georgakilas, Dimitra Karagkouni, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-miRPath v3.0: deciphering microRNA function with experimental support. Nucleic Acids Res. 43(Webserver-Issue): W460-W466 (2015)
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Ilias Kanellos, Vasiliki Vlachokyriakou, Thanasis Vergoulis, Georgios K. Georgakilas, Yannis Vassiliou, Artemis G. Hatzigeorgiou, Theodore Dalamagas:
MirPub v2: Towards Ranking and Refining miRNA Publication Search Results. TPDL 2015: 355-359
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Rodothea-Myrsini Tsoupidi, Ilias Kanellos, Thanasis Vergoulis, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou, Theodore Dalamagas:
TarMiner: automatic extraction of miRNA targets from literature. SSDBM 2015: 12:1-12:5
2014
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Thanasis Vergoulis:
Προηγμένες υπηρεσίες αναζήτησης και διαχείρισης δεδομένων στις βιοεπιστήμες. National Technical University of Athens, Greece, 2014
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Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou, Stelios Sartzetakis, Timos K. Sellis:
MR-microT: a MapReduce-based MicroRNA target prediction method. SSDBM 2014: 47:1-47:4
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Katerina Gkirtzou, Thanasis Vergoulis, Artemis G. Hatzigeorgiou, Timos K. Sellis, Theodore Dalamagas:
Publishing Diachronic Life Science Linked Data. SWAT4LS 2014
2013
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Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic Acids Res. 41(Webserver-Issue): 169-173 (2013)
2012
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Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res. 40(Database-Issue): 222-229 (2012)
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Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios K. Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res. 40(Web-Server-Issue): 498-504 (2012)
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Thanasis Vergoulis, Theodore Dalamagas, Dimitris Sacharidis, Timos K. Sellis:
Approximate regional sequence matching for genomic databases. VLDB J. 21(6): 779-795 (2012)
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Thanasis Vergoulis, Michail Alexakis, Theodore Dalamagas, Manolis Maragkakis, Artemis G. Hatzigeorgiou, Timos K. Sellis:
TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction. SSDBM 2012: 628-633
2011
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Manolis Maragkakis, Thanasis Vergoulis, Panagiotis Alexiou, Martin Reczko, Kyriaki Plomaritou, Mixail Gousis, Kornilios Kourtis, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. Nucleic Acids Res. 39(Web-Server-Issue): 145-148 (2011)
2010
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Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos K. Sellis, Artemis G. Hatzigeorgiou:
miRGen 2.0: a database of microRNA genomic information and regulation. Nucleic Acids Res. 38(Database-Issue): 137-141 (2010)

2000 – 2009

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2009
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Manolis Maragkakis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Martin Reczko, Theodore Dalamagas, Giorgos Giannopoulos, George I. Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A. Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou:
Accurate microRNA target prediction correlates with protein repression levels. BMC Bioinform. 10: 295 (2009)
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Manolis Maragkakis, Martin Reczko, Victor A. Simossis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Theodore Dalamagas, Giorgos Giannopoulos, Georgios I. Goumas, Evangelos Koukis, Kornilios Kourtis, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou:
DIANA-microT web server: elucidating microRNA functions through target prediction. Nucleic Acids Res. 37(Web-Server-Issue): 273-276 (2009)

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