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2020 – today

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2024
[j29]
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Mostafa M. Hamza, Ehsan Ullah, Abdelkader Baggag, Halima Bensmail, Michael Sedlmair, Michaël Aupetit:
ClustML: A measure of cluster pattern complexity in scatterplots learnt from human-labeled groupings. Inf. Vis. 23(2): 105-122 (2024)
2023
[j28]
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  - journals/bioinformatics/SalkovicSBSB23
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Edin Salkovic, Mohammad Amin Sadeghi, Abdelkader Baggag, Ahmed Gamal Rashed Salem, Halima Bensmail:
OutSingle: a novel method of detecting and injecting outliers in RNA-Seq count data using the optimal hard threshold for singular values. Bioinform. 39(4) (2023)
[c23]
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Nisreen Said Amer, Samir Brahim Belhaouari, Halima Bensmail:
Progressive Fourier Transform (PFT): Enhancing Time-Frequency Representation of EEG signals for Stress and Seizure Detection. BIBM 2023: 2441-2448
[c22]
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Mohammad Mominur Rahman, Ashhadul Islam, Skander Charni, Halima Bensmail, Thomas Hilbel, Samir Brahim Belhaouari:
A Novel Feature Extraction Technique for ECG Arrhythmia Classification Using ML. DASC/PiCom/CBDCom/CyberSciTech 2023: 615-621
2022
[j27]
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Ashhadul Islam, Samir Brahim Belhaouari, Atiq ur Rehman, Halima Bensmail:
KNNOR: An oversampling technique for imbalanced datasets. Appl. Soft Comput. 115: 108288 (2022)
[j26]
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Ashhadul Islam, Samir Brahim Belhaouari, Atiq ur Rehman, Halima Bensmail:
K Nearest Neighbor OveRsampling approach: An open source python package for data augmentation. Softw. Impacts 12: 100272 (2022)
2021
[j25]
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Edin Salkovic, Halima Bensmail:
A Novel Bayesian Outlier Score Based on the Negative Binomial Distribution for Detecting Aberrantly Expressed Genes in RNA-Seq Gene Expression Count Data. IEEE Access 9: 75789-75800 (2021)
[j24]
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Fuyi Li, Jinxiang Chen, Zongyuan Ge, Ya Wen, Yanwei Yue, Morihiro Hayashida, Abdelkader Baggag, Halima Bensmail, Jiangning Song:
Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework. Briefings Bioinform. 22(2): 2126-2140 (2021)
[j23]
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Heesoo Park, Adnan Ali, Raghvendra Mall, Halima Bensmail, Stefano Sanvito, Fedwa El-Mellouhi:
Data-driven enhancement of cubic phase stability in mixed-cation perovskites. Mach. Learn. Sci. Technol. 2(2): 25030 (2021)
[i2]
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  - journals/corr/abs-2106-00599
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Mostafa M. Abbas, Ehsan Ullah, Abdelkader Baggag, Halima Bensmail, Michael Sedlmair, Michaël Aupetit:
ClustRank: a Visual Quality Measure Trained on Perceptual Data for Sorting Scatterplots by Cluster Patterns. CoRR abs/2106.00599 (2021)
2020
[j22]
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  - journals/access/TuncerDOBB20
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Türker Tuncer, Sengül Dogan, Fatih Özyurt, Samir Brahim Belhaouari, Halima Bensmail:
Novel Multi Center and Threshold Ternary Pattern Based Method for Disease Detection Method Using Voice. IEEE Access 8: 84532-84540 (2020)
[j21]
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Zhen Chen, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song:
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences. Briefings Bioinform. 21(5): 1676-1696 (2020)
[j20]
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Abdurrahman Elbasir, Raghvendra Mall, Khalid Kunji, Reda Rawi, Zeyaul Islam, Gwo-Yu Chuang, Prasanna R. Kolatkar, Halima Bensmail:
BCrystal: an interpretable sequence-based protein crystallization predictor. Bioinform. 36(5): 1429-1438 (2020)
[j19]
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  - journals/jbcb/0009ZLLMWBBS20
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Zhen Chen, Pei Zhao, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Geoffrey I. Webb, Abdelkader Baggag, Halima Bensmail, Jiangning Song:
PROSPECT: A web server for predicting protein histidine phosphorylation sites. J. Bioinform. Comput. Biol. 18(4): 2050018:1-2050018:17 (2020)
[j18]
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Edin Salkovic, Mostafa M. Abbas, Samir Brahim Belhaouari, Khaoula Errafii, Halima Bensmail:
OutPyR: Bayesian inference for RNA-Seq outlier detection. J. Comput. Sci. 47: 101245 (2020)

2010 – 2019

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2019
[j17]
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Ishita K. Khan, Aashish Jain, Reda Rawi, Halima Bensmail, Daisuke Kihara:
Prediction of protein group function by iterative classification on functional relevance network. Bioinform. 35(8): 1388-1394 (2019)
[j16]
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Abdurrahman Elbasir, Balasubramanian Moovarkumudalvan, Khalid Kunji, Prasanna R. Kolatkar, Raghvendra Mall, Halima Bensmail:
DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction. Bioinform. 35(13): 2216-2225 (2019)
[j15]
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  - journals/bioinformatics/UllahADPMRSB19
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Ehsan Ullah, Michaël Aupetit, Arun Das, Abhishek Patil, Nooral Al Muftah, Reda Rawi, Mohamad Saad, Halima Bensmail:
KinVis: a visualization tool to detect cryptic relatedness in genetic datasets. Bioinform. 35(15): 2683-2685 (2019)
[j14]
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  - journals/cgf/AbbasASB19
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Mostafa M. Abbas, Michaël Aupetit, Michael Sedlmair, Halima Bensmail:
ClustMe: A Visual Quality Measure for Ranking Monochrome Scatterplots based on Cluster Patterns. Comput. Graph. Forum 38(3): 225-236 (2019)
[c21]
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  - conf/visualization/AupetitSABB19
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Michaël Aupetit, Michael Sedlmair, Mostafa M. Abbas, Abdelkader Baggag, Halima Bensmail:
Toward Perception-Based Evaluation of Clustering Techniques for Visual Analytics. IEEE VIS (Short Papers) 2019: 141-145
2018
[j13]
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  - journals/bioinformatics/KhuranaRKCBM18
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Sameer Khurana, Reda Rawi, Khalid Kunji, Gwo-Yu Chuang, Halima Bensmail, Raghvendra Mall:
DeepSol: a deep learning framework for sequence-based protein solubility prediction. Bioinform. 34(15): 2605-2613 (2018)
[c20]
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  - conf/bcb/AbbasLBHE18
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Mostafa M. Abbas, Thanh Le, Halima Bensmail, Vasant G. Honavar, Yasser El-Manzalawy:
Microbiomarkers Discovery in Inflammatory Bowel Diseases using Network-Based Feature Selection. BCB 2018: 172-177
[c19]
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  - conf/bibm/ElbasirMKKBM18
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Abdurrahman Elbasir, Balasubramanian Moovarkumudalvan, Khalid Kunji, Prasanna R. Kolatkar, Halima Bensmail, Raghvendra Mall:
DeepCrystal: A Deep Learning Framework for Sequence-based Protein Crystallization Prediction. BIBM 2018: 2747-2749
[c18]
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  - conf/iwbbio/MeerMUMB18
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Hossam Al Meer, Raghvendra Mall, Ehsan Ullah, Nasreddine Megrez, Halima Bensmail:
ISaaC: Identifying Structural Relations in Biological Data with Copula-Based Kernel Dependency Measures. IWBBIO (1) 2018: 71-82
[i1]
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  - journals/f1000research/MallUKCB18
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Raghvendra Mall, Ehsan Ullah, Khalid Kunji, Michele Ceccarelli, Halima Bensmail:
An unsupervised disease module identification technique in biological networks using novel quality metric based on connectivity, conductance and modularity. F1000Research 7: 378 (2018)
2017
[j12]
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Raghvendra Mall, Luigi Cerulo, Halima Bensmail, Antonio Iavarone, Michele Ceccarelli:
Detection of statistically significant network changes in complex biological networks. BMC Syst. Biol. 11(1): 32:1-32:17 (2017)
[c17]
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Raghvendra Mall, Ehsan Ullah, Khalid Kunji, Fulvio D'Angelo, Halima Bensmail, Michele Ceccarelli:
Differential Community Detection in Paired Biological Networks. BCB 2017: 330-339
[c16]
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Raghvendra Mall, Ehsan Ullah, Khalid Kunji, Halima Bensmail, Michele Ceccarelli:
An adaptive refinement for community detection methods for disease module identification in biological networks using novel metric based on connectivity, conductance & modularity. BIBM 2017: 2282-2284
[c15]
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Ehsan Ullah, Raghvendra Mall, Halima Bensmail, Reda Rawi, Saila Shama, Nooral Al Muftah, Ian Richard Thmpson:
Identification of cancer drug sensitivity biomarkers. BIBM 2017: 2322-2324
[c14]
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  - conf/pakdd/BaggagBS17
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Abdelkader Baggag, Halima Bensmail, Jaideep Srivastava:
Advanced Computation of Sparse Precision Matrices for Big Data. PAKDD (2) 2017: 27-38
2016
[j11]
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  - journals/bmcbi/RawiMKAAUB16
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Reda Rawi, Raghvendra Mall, Khalid Kunji, Mohammed El Anbari, Michaël Aupetit, Ehsan Ullah, Halima Bensmail:
COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator. BMC Bioinform. 17: 533:1-533:9 (2016)
[c13]
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Michaël Aupetit, Ehsan Ullah, Reda Rawi, Halima Bensmail:
A design study to identify inconsistencies in kinship information: The case of the 1000 Genomes project. PacificVis 2016: 254-258
[c12]
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  - conf/bcb/UllahMRB16
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Ehsan Ullah, Raghvendra Mall, Reda Rawi, Halima Bensmail:
Statistical and Network Analysis of Metabolomics Data. BCB 2016: 544-545
[c11]
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  - conf/dexaw/MallBB16
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Raghvendra Mall, Laure Berti-Équille, Halima Bensmail:
Metabolomic Data Profiling for Diabetes Research in Qatar. DEXA Workshops 2016: 39-43
[c10]
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  - conf/ijcnn/MallBLVS16
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Raghvendra Mall, Halima Bensmail, Rocco Langone, Carolina Varon, Johan A. K. Suykens:
Denoised Kernel Spectral data Clustering. IJCNN 2016: 3709-3716
2015
[c9]
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  - conf/bibm/RawiKHB15
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Reda Rawi, Khalid Kunji, Abdelali Haoudi, Halima Bensmail:
Residue-residue contact prediction in the HIV-1 envelope glycoprotein complex. BIBM 2015: 1709-1711
[c8]
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  - conf/smc/WangZDWB15
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Jingbin Wang, Yihua Zhou, Kanghong Duan, Jim Jing-Yan Wang, Halima Bensmail:
Supervised Cross-Modal Factor Analysis for Multiple Modal Data Classification. SMC 2015: 1882-1888
2014
[j10]
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  - journals/nn/WangBG14
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Jim Jing-Yan Wang, Halima Bensmail, Xin Gao:
Feature selection and multi-kernel learning for sparse representation on a manifold. Neural Networks 51: 9-16 (2014)
[j9]
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Jim Jing-Yan Wang, Halima Bensmail:
Unified framework for representing and ranking. Pattern Recognit. 47(6): 2293-2300 (2014)
[c7]
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  - conf/brain/AnbariNBRSB14
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Mohammed El Anbari, Nawel Nemmour, Othmane Bouhali, Reda Rawi, Ali Sheharyar, Halima Bensmail:
Computational Neuro-Modeling of Visual Memory: Multimodal Imaging and Analysis. Brain Informatics and Health 2014: 21-32
[c6]
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Mohammed El Anbari, Sidra Alam, Halima Bensmail:
COFADMM: A Computational Features Selection with Alternating Direction Method of Multipliers. ICCS 2014: 821-830
[c5]
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Jim Jing-Yan Wang, Yijun Sun, Halima Bensmail:
Domain transfer nonnegative matrix factorization. IJCNN 2014: 3605-3612
2013
[j8]
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  - journals/kbs/WangBYG13
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Jim Jing-Yan Wang, Halima Bensmail, Nan Yao, Xin Gao:
Discriminative sparse coding on multi-manifolds. Knowl. Based Syst. 54: 199-206 (2013)
[j7]
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Jim Jing-Yan Wang, Halima Bensmail, Xin Gao:
Multiple graph regularized nonnegative matrix factorization. Pattern Recognit. 46(10): 2840-2847 (2013)
[j6]
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Jim Jing-Yan Wang, Halima Bensmail, Xin Gao:
Joint learning and weighting of visual vocabulary for bag-of-feature based tissue classification. Pattern Recognit. 46(12): 3249-3255 (2013)
[c4]
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Jim Jing-Yan Wang, Halima Bensmail:
Cross-domain sparse coding. CIKM 2013: 1461-1464
[c3]
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Raghvendra Mall, Johan A. K. Suykens, Mohammed El Anbari, Halima Bensmail:
Primal-Dual Framework for Feature Selection using Least Squares Support Vector Machines. COMAD 2013: 105-108
[c2]
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  - conf/iccS/AtiehSB13
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Zeinab Atieh, Karsten Suhre, Halima Bensmail:
MetFlexo: An Automated Simulation of Realistic H¹-NMR Spectra. ICCS 2013: 1382-1391
2012
[j5]
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Jingyan Wang, Halima Bensmail, Xin Gao:
Multiple graph regularized protein domain ranking. BMC Bioinform. 13: 307 (2012)
[c1]
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  - conf/iconip/BensmailABA12
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Halima Bensmail, Samreen Anjum, Othmane Bouhali, Mohammed El Anbari:
RAFNI: Robust Analysis of Functional NeuroImages with Non-normal α-Stable Error. ICONIP (1) 2012: 624-631

2000 – 2009

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2005
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  - journals/bioinformatics/BensmailGMSH05
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Halima Bensmail, Jennifer Golek, Michelle M. Moody, O. John Semmes, Abdelali Haoudi:
A novel approach for clustering proteomics data using Bayesian fast Fourier transform. Bioinform. 21(10): 2210-2224 (2005)
[j3]
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Zhenqiu Liu, Dechang Chen, Halima Bensmail, Ying Xu:
Clustering Gene Expression Data with Kernel Principal Components. J. Bioinform. Comput. Biol. 3(2): 303-316 (2005)
2003
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Halima Bensmail, Jacqueline J. Meulman:
Model-based Clustering with Noise: Bayesian Inference and Estimation. J. Classif. 20(1): 049-076 (2003)

1990 – 1999

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1997
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Halima Bensmail, Gilles Celeux, Adrian E. Raftery, Christian P. Robert:
Inference in model-based cluster analysis. Stat. Comput. 7(1): 1-10 (1997)

Coauthor Index

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