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James A. Overton
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2020 – today
- 2024
- [i3]Harshad Hegde, Jennifer Vendetti, Damien Goutte-Gattat, J. Harry Caufield, John Graybeal, Nomi L. Harris, Naouel Karam, Christian Kindermann, Nicolas Matentzoglu, James A. Overton, Mark A. Musen, Christopher J. Mungall:
A Change Language for Ontologies and Knowledge Graphs. CoRR abs/2409.13906 (2024) - 2023
- [j22]Jarjapu Mahita
, Brendan Ha, Anais Gambiez, Sharon L. Schendel, Haoyang Li, Kathryn M. Hastie, S. Moses Dennison
Coronavirus Immunotherapeutic Consortium Database. Database J. Biol. Databases Curation 2023 (2023) - 2022
- [j21]Nicolas Matentzoglu
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022) - [j20]Nicolas Matentzoglu
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database J. Biol. Databases Curation 2022(2022) (2022) - [c12]Emily Hartley, Daniel Olson, Ian Braun, Nicolas Matentzoglu, James A. Overton, Ramona L. Walls:
Building an Application Ontology and Knowledge Graph for Rare Disease Patient-Level Data. ICBO 2022: 1 - [c11]James A. Overton:
The OntoDev Suite of Ontology and Data Integration Tools. ICBO 2022: 1 - [c10]James A. Overton, Rebecca C. Jackson, Nicolas Matentzoglu, William D. Duncan, Randi Vita, Nomi L. Harris, Christopher J. Mungall, Bjoern Peters:
COB: A Core Ontology for Biology and Biomedicine. ICBO 2022: 1 - [c9]James A. Overton, Rebecca C. Jackson, Sabrina Toro, Shawn Zheng Kai Tan, Bradley Varner, David Osumi-Sutherland, Nicolas Matentzoglu, Nicole A. Vasilevsky:
OBO Academy: Training Materials for Bioontologists. ICBO 2022: 1 - [i2]Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. CoRR abs/2207.02056 (2022) - 2021
- [j19]Lindy Edwards, Rebecca C. Jackson, James A. Overton, Randi Vita
An immunologically friendly classification of non-peptidic ligands. Database J. Biol. Databases Curation 2021 (2021) - [j18]Rebecca C. Jackson
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021) - [j17]Randi Vita
Standardization of assay representation in the Ontology for Biomedical Investigations. Database J. Biol. Databases Curation 2021 (2021) - [i1]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021) - 2020
- [j16]Randi Vita
A structured model for immune exposures. Database J. Biol. Databases Curation 2020 (2020) - [j15]James A. Overton
String of PURLs - frugal migration and maintenance of persistent identifiers. Data Sci. 3(1): 3-13 (2020)
2010 – 2019
- 2019
- [j14]Rebecca C. Jackson
ROBOT: A Tool for Automating Ontology Workflows. BMC Bioinform. 20(1): 407:1-407:10 (2019) - [j13]James A. Overton, Randi Vita
Reporting and connecting cell type names and gating definitions through ontologies. BMC Bioinform. 20-S(5): 259-264 (2019) - [j12]Randi Vita
The Immune Epitope Database (IEDB): 2018 update. Nucleic Acids Res. 47(Database-Issue): D339-D343 (2019) - 2018
- [j11]Randi Vita
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. Database J. Biol. Databases Curation 2018: bax105 (2018) - [j10]Randi Vita
Identification of errors in the IEDB using ontologies. Database J. Biol. Databases Curation 2018: bay005 (2018) - [j9]Yongqun He
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability. J. Biomed. Semant. 9(1): 3:1-3:10 (2018) - [c8]Rebecca Tauber, James P. Balhoff, Eric Douglass, Chris Mungall, James A. Overton:
Standardizing Ontology Workflows Using ROBOT. ICBO 2018 - [c7]Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein:
Formalizing the Representation of Immune Exposures for Human Immunology Studies. ICBO 2018 - 2017
- [j8]Randi Vita
Better living through ontologies at the Immune Epitope Database. Database J. Biol. Databases Curation 2017: bax014 (2017) - [j7]Metin N. Gurcan
Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem. J. Biomed. Informatics 66: 129-135 (2017) - [c6]Gully A. Burns, Randi Vita, James A. Overton, Ward Fleri, Bjoern Peters:
Semantic Modeling for Accelerated Immune Epitope Database (IEDB) Biocuration. K-CAP Workshops 2017: 7-12 - 2016
- [j6]Randi Vita
An ontology for major histocompatibility restriction. J. Biomed. Semant. 7: 1 (2016) - [j5]Heiner Oberkampf, Sonja Zillner, James A. Overton, Bernhard Bauer, Alexander Cavallaro, Michael Uder, Matthias Hammon:
Semantic representation of reported measurements in radiology. BMC Medical Informatics Decis. Mak. 16: 5 (2016) - [c5]James A. Overton:
Humane OWL: RDF and OWL for Humans. ICBO/BioCreative 2016 - 2015
- [j4]Randi Vita
The immune epitope database (IEDB) 3.0. Nucleic Acids Res. 43(Database-Issue): 405-412 (2015) - [c4]James A. Overton:
EDN-LD: A simple linked data tool. ICBO 2015 - [c3]James A. Overton, Heiko Dietze, Shahim Essaid, David Osumi-Sutherland, Christopher J. Mungall:
ROBOT: A command-line tool for ontology development. ICBO 2015 - 2013
- [j3]Randi Vita, James A. Overton, Jason Greenbaum, Alessandro Sette, Björn Peters:
Query enhancement through the practical application of ontology: the IEDB and OBI. J. Biomed. Semant. 4(S-1): S6 (2013) - [j2]James A. Overton:
"Explain" in scientific discourse. Synth. 190(8): 1383-1405 (2013) - [c2]James A. Overton, Randi Vita, Jason Greenbaum, Heiko Dietze, Alessandro Sette, Bjoern Peters:
A Taxonomy for Immunologists. ICBO 2013: 124 - 2011
- [j1]James A. Overton, Cesare Romagnoli, Rethy Chhem:
Open Biomedical Ontologies applied to prostate cancer. Appl. Ontology 6(1): 35-51 (2011) - [c1]James A. Overton:
Philosophy, Ontology, and Scientific Explanation. ICBO 2011
Coauthor Index
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