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Steven H. Kleinstein
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2020 – today
- 2023
- [j22]Adam J. H. Newton, David Chartash, Steven H. Kleinstein, Robert A. McDougal:
A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures. BMC Bioinform. 24(1): 292 (2023) - [j21]Xi Chen, Yuan Wang
, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf Zamojski
Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. Nat. Comput. Sci. 3(7): 644-657 (2023) - [j20]Xi Chen, Yuan Wang
Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. Nat. Comput. Sci. 3(9): 805 (2023) - 2022
- [j19]Kenneth B. Hoehn, Oliver G. Pybus
Phylogenetic analysis of migration, differentiation, and class switching in B cells. PLoS Comput. Biol. 18(4) (2022) - 2021
- [j18]Syed Ahmad Chan Bukhari, Shrikant Pawar, Jeff Mandell
LinkedImm: a linked data graph database for integrating immunological data. BMC Bioinform. 22-S(9): 105 (2021) - 2020
- [j17]Randi Vita
A structured model for immune exposures. Database J. Biol. Databases Curation 2020 (2020) - [j16]Nima Nouri
Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data. PLoS Comput. Biol. 16(6) (2020)
2010 – 2019
- 2019
- [j15]James A. Overton, Randi Vita
Reporting and connecting cell type names and gating definitions through ontologies. BMC Bioinform. 20-S(5): 259-264 (2019) - [j14]Hailong Meng, Gur Yaari
Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE). PLoS Comput. Biol. 15(4) (2019) - [c9]Syed Ahmad Chan Bukhari, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung:
A linked data graph approach to integration of immunological data. BIBM 2019: 1742-1749 - 2018
- [j13]Nima Nouri, Steven H. Kleinstein:
A spectral clustering-based method for identifying clones from high-throughput B cell repertoire sequencing data. Bioinform. 34(13): i341-i349 (2018) - [j12]Syed Ahmad Chan Bukhari
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. BMC Bioinform. 19(1): 268:1-268:6 (2018) - [c8]Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein:
Formalizing the Representation of Immune Exposures for Human Immunology Studies. ICBO 2018 - [c7]Mark A. Musen, Susanna-Assunta Sansone, Kei-Hoi Cheung, Steven H. Kleinstein, Morgan Crafts, Stephan C. Schürer, John Graybeal:
CEDAR: Semantic Web Technology to Support Open Science. WWW (Companion Volume) 2018: 427-428 - 2017
- [j11]Stefan Avey, Subhasis Mohanty, Jean Wilson, Heidi Zapata, Samit R. Joshi, Barbara Siconolfi, Sui Tsang, Albert C. Shaw, Steven H. Kleinstein:
Multiple network-constrained regressions expand insights into influenza vaccination responses. Bioinform. 33(14): i208-i216 (2017) - 2016
- [j10]Inimary T. Toby, Mikhail K. Levin, Edward Salinas, Scott Christley, Sanchita Bhattacharya, Felix Breden, Adam Buntzman
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. BMC Bioinform. 17(S-13): 333 (2016) - [c6]Trevor Cohen, Dominic Widdows, Jason A. Vander Heiden, Namita T. Gupta, Steven H. Kleinstein:
Graded Vector Representations of Immunoglobulins Produced in Response to West Nile Virus. QI 2016: 135-148 - 2015
- [j9]Namita T. Gupta
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data. Bioinform. 31(20): 3356-3358 (2015) - [j8]Mark A. Musen
The center for expanded data annotation and retrieval. J. Am. Medical Informatics Assoc. 22(6): 1148-1152 (2015) - [c5]Demetrios Sarantis, Steven H. Kleinstein, Kei Cheung:
Improvement of cytokine annotation using ontology synonym mapping. AMIA 2015 - 2014
- [j7]Jason A. Vander Heiden, Gur Yaari
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires. Bioinform. 30(13): 1930-1932 (2014) - 2013
- [j6]Elena Zaslavsky
Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection. BMC Bioinform. 14(S-6): S1 (2013) - 2011
- [j5]Christopher R. Bolen, Mohamed Uduman, Steven H. Kleinstein:
Cell Subset Prediction for Blood Genomic Studies. BMC Bioinform. 12: 258 (2011) - [j4]Mark J. O'Connor
Activated germinal centre B cells undergo directed migration. Int. J. Data Min. Bioinform. 5(3): 321-331 (2011) - [j3]Mohamed Uduman, Gur Yaari
Detecting selection in immunoglobulin sequences. Nucleic Acids Res. 39(Web-Server-Issue): 499-504 (2011) - [c4]Emmett Sprecher, Sudipa Sarkar, Steven H. Kleinstein, Murli Narayan, Eric P. Winer, David Tuck, Kimberly Lezon-Geyda, Ian Krop, Lyndsay Harris:
Association between response to brief trastuzumab exposure in cell lines and early stage HER2+ breast tumors. BCB 2011: 446-450
2000 – 2009
- 2009
- [c3]Mark J. O'Connor, Anja E. Hauser
Activated Germinal-Center B Cells Undergo Directed Migration. BIBM 2009: 327-331 - 2008
- [j2]Steven H. Kleinstein:
Getting Started in Computational Immunology. PLoS Comput. Biol. 4(8) (2008) - 2006
- [c2]Reuma Magori-Cohen, Yoram Louzoun, Steven H. Kleinstein:
Mutation parameters from DNA sequence data using graph theoretic measures on lineage trees. ISMB (Supplement of Bioinformatics) 2006: 332-340 - [c1]Steven H. Kleinstein, Dean Bottino, Anna Georgieva, Ramesh Sarangapani, G. Scott Lett:
Nonuniform sampling for global optimization of kinetic rate constants in biological pathways. WSC 2006: 1611-1616 - 2000
- [j1]Steven H. Kleinstein, Philip E. Seiden:
Simulating the immune system. Comput. Sci. Eng. 2(4): 69-77 (2000)
Coauthor Index
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