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Dongqing Wei
Dong-Qing Wei – Dongqing-Wei
This is just a disambiguation page, and is not intended to be the bibliography of an actual person. Any publication listed on this page has not been assigned to an actual author yet. If you know the true author of one of the publications listed below, you are welcome to contact us.
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2020 – today
- 2024
- [j77]Abdul Nasir, Abdus Samad, Sami Ullah, Arif Ali, Dong-Qing Wei
, Bai Qian:
Omicron variant (B.1.1.529) challenge the integrity of blood brain barrier: Evidence from protein structural analysis. Comput. Biol. Medicine 169: 107906 (2024) - [j76]Muhammad Shahab, Muhammad Waleed Iqbal
Immunoinformatics-driven In silico vaccine design for Nipah virus (NPV): Integrating machine learning and computational epitope prediction. Comput. Biol. Medicine 170: 108056 (2024) - [j75]Yufang Zhang, Jiayi Li, Shenggeng Lin, Jianwei Zhao, Yi Xiong, Dong-Qing Wei:
An end-to-end method for predicting compound-protein interactions based on simplified homogeneous graph convolutional network and pre-trained language model. J. Cheminformatics 16(1): 67 (2024) - [j74]Aamir Mehmood
DDSBC: A Stacking Ensemble Classifier-Based Approach for Breast Cancer Drug-Pair Cell Synergy Prediction. J. Chem. Inf. Model. 64(16): 6421-6431 (2024) - [j73]Chen Zhang
STGIC: A graph and image convolution-based method for spatial transcriptomic clustering. PLoS Comput. Biol. 20(2) (2024) - 2023
- [j72]Hongwei Chen
AdaPPI: identification of novel protein functional modules via adaptive graph convolution networks in a protein-protein interaction network. Briefings Bioinform. 24(1) (2023) - [j71]Yitian Fang
AFP-MFL: accurate identification of antifungal peptides using multi-view feature learning. Briefings Bioinform. 24(1) (2023) - [j70]Jing Zhao
Subtype-DCC: decoupled contrastive clustering method for cancer subtype identification based on multi-omics data. Briefings Bioinform. 24(2) (2023) - [j69]Asma Sindhoo Nangraj, Saima Sipy, Abbas Khan
ESOMIR: a curated database of biomarker genes and miRNAs associated with esophageal cancer. Database J. Biol. Databases Curation 2023 (2023) - [j68]Yitian Fang, Yi Jiang, Leyi Wei
DeepProSite: structure-aware protein binding site prediction using ESMFold and pretrained language model. Bioinform. 39(12) (2023) - [j67]Zhaobin Xu, Dongqing Wei
More or less deadly? A mathematical model that predicts SARS-CoV-2 evolutionary direction. Comput. Biol. Medicine 153: 106510 (2023) - [j66]Abbas Khan
Structure-based design of promising natural products to inhibit thymidylate kinase from Monkeypox virus and validation using free energy calculations. Comput. Biol. Medicine 158: 106797 (2023) - [j65]Yifan Jin
Proteomics-based vaccine targets annotation and design of subunit and mRNA-based vaccines for Monkeypox virus (MPXV) against the recent outbreak. Comput. Biol. Medicine 159: 106893 (2023) - [j64]Wenfeng Li, Farah Bano, Abbas Khan
Inhibition of cMYC-MAX transcription factors hetero-dimerization with structurally engineered omoMYC to downregulate oncogenic pathways in renal carcinoma. Comput. Biol. Medicine 164: 107257 (2023) - [j63]Jie Chen, Zhiwei Nie
Running ahead of evolution - AI-based simulation for predicting future high-risk SARS-CoV-2 variants. Int. J. High Perform. Comput. Appl. 37(6): 650-665 (2023) - [j62]Heqi Sun
A Multimodal Deep Learning Framework for Predicting PPI-Modulator Interactions. J. Chem. Inf. Model. 63(23): 7363-7372 (2023) - [c6]Keliang Zhao, Jovial Niyogisubizo, Linxia Xiao
A Novel Deep Learning Approach Featuring Graph-Based Algorithm for Cell Segmentation and Tracking. BIBM 2023: 1752-1757 - 2022
- [j61]Shenggeng Lin, Yanjing Wang, Lingfeng Zhang, Yanyi Chu, Yatong Liu, Yitian Fang, Mingming Jiang, Qiankun Wang, Bowen Zhao, Yi Xiong
MDF-SA-DDI: predicting drug-drug interaction events based on multi-source drug fusion, multi-source feature fusion and transformer self-attention mechanism. Briefings Bioinform. 23(1) (2022) - [j60]Yaning Yang, Xiaoqi Wang, Deshan Zhou, Dong-Qing Wei, Shaoliang Peng
SVPath: an accurate pipeline for predicting the pathogenicity of human exon structural variants. Briefings Bioinform. 23(2) (2022) - [j59]Yi Cao, Zhen-Qun Yang, Xu-Lu Zhang, Wenqi Fan, Yaowei Wang, Jiajun Shen
Identifying the kind behind SMILES - anatomical therapeutic chemical classification using structure-only representations. Briefings Bioinform. 23(5) (2022) - [j58]Fahad Humayun, Yutong Cai, Abbas Khan
Structure-guided design of multi-epitopes vaccine against variants of concern (VOCs) of SARS-CoV-2 and validation through In silico cloning and immune simulations. Comput. Biol. Medicine 140: 105122 (2022) - [j57]Fahad Humayun, Abbas Khan
Abrogation of SARS-CoV-2 interaction with host (NRP1) neuropilin-1 receptor through high-affinity marine natural compounds to curtail the infectivity: A structural-dynamics data. Comput. Biol. Medicine 141: 104714 (2022) - [j56]Abbas Khan, Sarfaraz Hussain, Sajjad Ahmad, Muhammad Suleman, Imrana Bukhari, Taimoor Khan, Farooq Rashid, Abul Kalam Azad, Muhammad Waseem, Wajid Khan, Zahid Hussain, Asghar Khan, Syed Shujait Ali, Qiyao Qin, Dong-Qing Wei:
Computational modelling of potentially emerging SARS-CoV-2 spike protein RBDs mutations with higher binding affinity towards ACE2: A structural modelling study. Comput. Biol. Medicine 141: 105163 (2022) - [j55]Abdullah Shah, Saira Rehmat, Iqra Aslam, Muhmmad Suleman
Comparative mutational analysis of SARS-CoV-2 isolates from Pakistan and structural-functional implications using computational modelling and simulation approaches. Comput. Biol. Medicine 141: 105170 (2022) - [j54]Aamir Mehmood
Discovering potent inhibitors against the Mpro of the SARS-CoV-2. A medicinal chemistry approach. Comput. Biol. Medicine 143: 105235 (2022) - [j53]Ismail Shah, Sehrooz Jamil, Saira Rehmat, Hammad Ahmad Butt, Syed Shujait Ali
Evaluation and identification of essential therapeutic proteins and vaccinomics approach towards multi-epitopes vaccine designing against Legionella pneumophila for immune response instigation. Comput. Biol. Medicine 143: 105291 (2022) - [j52]Imtiaz Ali
Crystal structure of Acetyl-CoA carboxylase (AccB) from Streptomyces antibioticus and insights into the substrate-binding through in silico mutagenesis and biophysical investigations. Comput. Biol. Medicine 145: 105439 (2022) - [j51]Taimoor Khan, Muhammad Suleman
Subtractive proteomics assisted therapeutic targets mining and designing ensemble vaccine against Candida auris for immune response induction. Comput. Biol. Medicine 145: 105462 (2022) - [j50]Abbas Khan
A protein coupling and molecular simulation analysis of the clinical mutants of androgen receptor revealed a higher binding for Leupaxin, to increase the prostate cancer invasion and motility. Comput. Biol. Medicine 146: 105537 (2022) - [j49]Athar Shafiq, Farrukh Zubair, Amna Ambreen, Muhammad Suleman
Investigation of the binding and dynamic features of A.30 variant revealed higher binding of RBD for hACE2 and escapes the neutralizing antibody: A molecular simulation approach. Comput. Biol. Medicine 146: 105574 (2022) - [j48]Muhammad Suleman
Screening of immune epitope in the proteome of the Dabie bandavirus, SFTS, to design a protein-specific and proteome-wide vaccine for immune response instigation using an immunoinformatics approaches. Comput. Biol. Medicine 148: 105893 (2022) - [j47]Shenggeng Lin, Guangwei Zhang, Dong-Qing Wei, Yi Xiong
DeepPSE: Prediction of polypharmacy side effects by fusing deep representation of drug pairs and attention mechanism. Comput. Biol. Medicine 149: 105984 (2022) - [j46]Shenggeng Lin, Weizhi Chen, Gengwang Chen, Songchi Zhou, Dong-Qing Wei, Yi Xiong:
MDDI-SCL: predicting multi-type drug-drug interactions via supervised contrastive learning. J. Cheminformatics 14(1): 81 (2022) - [j45]Yanyi Chu
A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design. Nat. Mach. Intell. 4(3): 300-311 (2022) - [c5]Tianyu Wang, Wenming Yang, Jie Chen, Yonghong Tian, Dong-Qing Wei:
ConformerDTI: Local Features Coupling Global Representations for Drug-Target Interaction Prediction. BIBM 2022: 1227-1234 - 2021
- [j44]Zhiwen Shi
Prediction of Blood-Brain Barrier Permeability of Compounds by Fusing Resampling Strategies and eXtreme Gradient Boosting. IEEE Access 9: 9557-9566 (2021) - [j43]Nagina Inayat, Mukhtaj Khan
iEnhancer-DHF: Identification of Enhancers and Their Strengths Using Optimize Deep Neural Network With Multiple Features Extraction Methods. IEEE Access 9: 40783-40796 (2021) - [j42]Nazia Azim, Nadeem Iqbal
A Static Analysis of Wnt/β-Catenin and Wnt/Ca2+ Biological Regulatory Networks for ARVC Using Automata Network Model. IEEE Access 9: 107611-107624 (2021) - [j41]Yanyi Chu
DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features. Briefings Bioinform. 22(1): 451-462 (2021) - [j40]Yanyi Chu, Xiaoqi Shan, Tianhang Chen, Mingming Jiang, Yanjing Wang
DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method. Briefings Bioinform. 22(3) (2021) - [j39]Aman Chandra Kaushik
Irinotecan and vandetanib create synergies for treatment of pancreatic cancer patients with concomitant TP53 and KRAS mutations. Briefings Bioinform. 22(3) (2021) - [j38]Wei Wang
MLCDForest: multi-label classification with deep forest in disease prediction for long non-coding RNAs. Briefings Bioinform. 22(3) (2021) - [j37]Yanyi Chu
MDA-GCNFTG: identifying miRNA-disease associations based on graph convolutional networks via graph sampling through the feature and topology graph. Briefings Bioinform. 22(6) (2021) - [j36]Mingming Jiang
NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods. Briefings Bioinform. 22(6) (2021) - [j35]Aman Chandra Kaushik, Qiqi Wu, Li Lin, Haibo Li, Longqi Zhao, Zilu Wen, Yanzheng Song, Qihang Wu, Jin Wang
Exosomal ncRNAs profiling of mycobacterial infection identified miRNA-185-5p as a novel biomarker for tuberculosis. Briefings Bioinform. 22(6) (2021) - [j34]Abbas Khan
BC-TFdb: a database of transcription factor drivers in breast cancer. Database J. Biol. Databases Curation 2021 (2021) - [j33]Taimoor Khan, Abbas Khan
MMV-db: vaccinomics and RNA-based therapeutics database for infectious hemorrhagic fever-causing mammarenaviruses. Database J. Biol. Databases Curation 2021 (2021) - [j32]Adnan Zeb, Syed Shujait Ali
Genome-wide screening of vaccine targets prioritization and reverse vaccinology aided design of peptides vaccine to enforce humoral immune response against Campylobacter jejuni. Comput. Biol. Medicine 133: 104412 (2021) - [j31]Abbas Khan
Immunogenomics guided design of immunomodulatory multi-epitope subunit vaccine against the SARS-CoV-2 new variants, and its validation through in silico cloning and immune simulation. Comput. Biol. Medicine 133: 104420 (2021) - [j30]Taimoor Khan, Abbas Khan
CytomegaloVirusDb: Multi-omics knowledge database for cytomegaloviruses. Comput. Biol. Medicine 135: 104563 (2021) - [j29]Qiuying Dai
MDA-CF: Predicting MiRNA-Disease associations based on a cascade forest model by fusing multi-source information. Comput. Biol. Medicine 136: 104706 (2021) - [j28]Muhammad Tahir Ul Qamar
Structural probing of HapR to identify potent phytochemicals to control Vibrio cholera through integrated computational approaches. Comput. Biol. Medicine 138: 104929 (2021) - [j27]Muhammad Suleman, Qudsia Yousafi, Javaid Ali, Syed Shujait Ali, Zahid Hussain, Shahid Ali
Bioinformatics analysis of the differences in the binding profile of the wild-type and mutants of the SARS-CoV-2 spike protein variants with the ACE2 receptor. Comput. Biol. Medicine 138: 104936 (2021) - [j26]Aamir Mehmood
Bringing Structural Implications and Deep Learning-Based Drug Identification for KRAS Mutants. J. Chem. Inf. Model. 61(2): 571-586 (2021) - [j25]Dong-Qing Wei
Editorial: Computational Genomics and Molecular Medicine for Emerging COVID-19. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1227-1229 (2021) - [j24]Deshan Zhou
LUNAR : Drug Screening for Novel Coronavirus Based on Representation Learning Graph Convolutional Network. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1290-1298 (2021) - [j23]Aman Chandra Kaushik, Aamir Mehmood
CoronaPep: An Anti-Coronavirus Peptide Generation Tool. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1299-1304 (2021) - [c4]Aman Chandra Kaushik, Aamir Mehmood, Ajay Kumar, Ankit Babu, Dong-Qing Wei, Zhongming Zhao:
Mining Cancer Cell Line-Based Drugs to Benefit KRAS(G12D) Pancreatic Adenocarcinoma Patients. BIBM 2021: 2423-2428 - [c3]Bin Xin, Yaning Yang, Dongqing Wei, Shaoliang Peng
CFCN: A Multi-scale Fully Convolutional Network with Dilated Convolution for Nuclei Classification and Localization. ISBRA 2021: 314-323 - 2020
- [j22]Wei Wang, Xiaoqing Guan, Muhammad Tahir Khan
LMI-DForest: A deep forest model towards the prediction of lncRNA-miRNA interactions. Comput. Biol. Chem. 89: 107406 (2020) - [j21]Shaozhen Ding
novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model. Nucleic Acids Res. 48(Webserver-Issue): W477-W487 (2020) - [j20]Shaoliang Peng
High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 804-816 (2020) - [c2]Xiaoyi Feng, Shaoliang Peng
A drug information embedding method based on graph convolution neural network. HealthCom 2020: 1-6
2010 – 2019
- 2019
- [j19]Satyavani Kaliamurthi
Immunomics Datasets and Tools: To Identify Potential Epitope Segments for Designing Chimeric Vaccine Candidate to Cervix Papilloma. Data 4(1): 31 (2019) - [j18]Cheng-Dong Li, Muhammad Junaid
Helix-Switch Enables C99 Dimer Transition between the Multiple Conformations. J. Chem. Inf. Model. 59(1): 339-350 (2019) - [j17]Muhammad Junaid
Insights into the Mechanisms of the Pyrazinamide Resistance of Three Pyrazinamidase Mutants N11K, P69T, and D126N. J. Chem. Inf. Model. 59(1): 498-508 (2019) - [j16]Xiaoqi Shan, Xiangeng Wang
Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method. J. Chem. Inf. Model. 59(11): 4577-4586 (2019) - 2018
- [j15]Ling Liu, Yi Xiong
dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions. Database J. Biol. Databases Curation 2018: bay034 (2018) - [j14]Abbas Khan
Identification of novel drug targets for diamond-blackfan anemia based on RPS19 gene mutation using protein-protein interaction network. BMC Syst. Biol. 12(4): 5-16 (2018) - [j13]Gurudeeban Selvaraj
Identification of target gene and prognostic evaluation for lung adenocarcinoma using gene expression meta-analysis, network analysis and neural network algorithms. J. Biomed. Informatics 86: 120-134 (2018) - 2017
- [j12]Shuang Hou
Inhibition of β-Amyloid Channels with a Drug Candidate wgx-50 Revealed by Molecular Dynamics Simulations. J. Chem. Inf. Model. 57(11): 2811-2821 (2017) - [j11]Weizhong Tu, Shaozhen Ding, Ling Wu, Zhe Deng, Hui Zhu
SynBioEcoli: a comprehensive metabolism network of engineered E. coli in three dimensional visualization. Quant. Biol. 5(1): 99-104 (2017) - 2016
- [c1]Shaoliang Peng, Xiaoyu Zhang, Yutong Lu, Xiangke Liao, Kai Lu, Canqun Yang, Jie Liu, Weiliang Zhu, Dongqing Wei
mAMBER: A CPU/MIC collaborated parallel framework for AMBER on Tianhe-2 supercomputer. BIBM 2016: 651-657 - 2015
- [j10]Miaomiao Zhao, Yunpeng Cai, Jiankui He, Guanyu Wang, Dongqing Wei
Personalized clinical data screening: Special issue on health informatics. Comput. Biol. Medicine 61: 161-162 (2015) - 2013
- [j9]Qi Chen, John K. Buolamwini, Jeremy C. Smith
Impact of Resistance Mutations on Inhibitor Binding to HIV-1 Integrase. J. Chem. Inf. Model. 53(12): 3297-3307 (2013) - 2012
- [j8]Ying Wang
Autoinhibitory Mechanism for the Mutation-Induced Impaired FGF9 Signaling. J. Chem. Inf. Model. 52(9): 2422-2429 (2012) - [j7]Juan Huo, Alan F. Murray, Dongqing Wei:
Adaptive Visual and Auditory Map Alignment in Barn Owl Superior Colliculus and Its Neuromorphic Implementation. IEEE Trans. Neural Networks Learn. Syst. 23(9): 1486-1497 (2012) - 2011
- [j6]Tao Zhang, Limin Angela Liu, David F. V. Lewis, Dong-Qing Wei:
Long-Range Effects of a Peripheral Mutation on the Enzymatic Activity of Cytochrome P450 1A2. J. Chem. Inf. Model. 51(6): 1336-1346 (2011) - [j5]Jue Li, Dong-Qing Wei
A Negative Cooperativity Mechanism of Human CYP2E1 Inferred from Molecular Dynamics Simulations and Free Energy Calculations. J. Chem. Inf. Model. 51(12): 3217-3225 (2011) - [e1]Limin Angela Liu, Dong-Qing Wei, Yixue Li, Huimin Lei:
Handbook of Research on Computational and Systems Biology - Interdisciplinary Applications. IGI Global 2011, ISBN 978-1-60960-491-2 [contents] - 2010
- [j4]Zhiyuan Xie, Tao Zhang, Jing-Fang Wang
The computational model to predict accurately inhibitory activity for inhibitors towardsCYP3A4. Comput. Biol. Medicine 40(11-12): 845-852 (2010) - [j3]Ying Wang
Molecular Dynamics Studies on T1 Lipase: Insight into a Double-Flap Mechanism. J. Chem. Inf. Model. 50(5): 875-878 (2010)
2000 – 2009
- 2005
- [j2]Suzanne W. Sirois, George E. Hatzakis, Dongqing Wei, Qishi Du, Kuo-Chen Chou:
Assessment of chemical libraries for their druggability. Comput. Biol. Chem. 29(1): 55-67 (2005) - 2004
- [j1]Suzanne W. Sirois, Dongqing Wei, Qishi Du, Kuo-Chen Chou:
Virtual Screening for SARS-CoV Protease Based on KZ7088 Pharmacophore Points. J. Chem. Inf. Model. 44(3): 1111-1122 (2004)
Coauthor Index
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last updated on 2024-10-11 17:29 CEST by the dblp team
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