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15. RECOMB 2011: Vancouver, BC, Canada
- Vineet Bafna, Süleyman Cenk Sahinalp:
Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings. Lecture Notes in Computer Science 6577, Springer 2011, ISBN 978-3-642-20035-9 - Amnon Amir, Or Zuk:
Bacterial Community Reconstruction Using Compressed Sensing. 1-15 - Swapnil Bhatia
, Yong J. Kil, Beatrix Ueberheide, Brian T. Chait, Lemmuel Lara Tayo
Constrained De Novo Sequencing of Peptides with Application to Conotoxins. 16-30 - Leonid Chindelevitch
Metabolic Network Analysis Demystified. 31-33 - Leonid Chindelevitch
Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes - (Extended Abstract). 34-37 - Nilgun Donmez, Michael Brudno:
Hapsembler: An Assembler for Highly Polymorphic Genomes. 38-52 - Jason Ernst, Manolis Kellis:
Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome. 53 - Sinan Erten, Gürkan Bebek, Mehmet Koyutürk
Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks. 54-68 - Irit Gat-Viks, Renana Meller, Martin Kupiec, Ron Shamir:
Understanding Gene Sequence Variation in the Context of Transcription Regulation in Yeast. 69 - Allison P. Heath, George N. Bennett, Lydia E. Kavraki
Identifying Branched Metabolic Pathways by Merging Linear Metabolic Pathways. 70-84 - Glenn Hickey, Mathieu Blanchette:
A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels. 85-103 - Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew W. McPherson, Evan E. Eichler, Süleyman Cenk Sahinalp:
Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes. 104-105 - Jim C. Huang, Nebojsa Jojic:
Variable Selection through Correlation Sifting. 106-123 - Shuai Jiang, Max A. Alekseyev
Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion of Transpositions. 124-133 - Jaebum Kim, Jian Ma:
PSAR: Measuring Multiple Sequence Alignment Reliability by Probabilistic Sampling - (Extended Abstract). 134-135 - Bonnie Kirkpatrick, Shuai Cheng Li
Pedigree Reconstruction Using Identity by Descent. 136-152 - Sooraj KuttyKrishnan, Jeffrey Sabina, Laura Langton, Mark Johnston, Michael R. Brent:
A Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription. 153 - Mark D. M. Leiserson, Diana Tatar, Lenore J. Cowen, Benjamin J. Hescott:
Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut. 154-167 - Wei Li
IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly - (Extended Abstract). 168-188 - Xin Li, Jing Li
Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals. 189-203 - Tien-ho Lin, Ziv Bar-Joseph
Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs. 204-221 - Jeffrey W. Martin, Anthony K. Yan, Chris Bailey-Kellogg, Pei Zhou
A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-oligomers from NOEs and RDCs. 222-237 - Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner:
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. 238-251 - Navodit Misra, Guy E. Blelloch, R. Ravi, Russell Schwartz
An Optimization-Based Sampling Scheme for Phylogenetic Trees. 252-266 - Hosein Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudêncio
Multiplex De Novo Sequencing of Peptide Antibiotics. 267-281 - Joe Nadeau:
Fractal and Transgenerational Genetic Effects on Phenotypic Variation and Disease Risk. 282 - Daniel Newkirk, Jacob Biesinger
AREM: Aligning Short Reads from ChIP-Sequencing by Expectation Maximization. 283-297 - Julio Ng, Amihood Amir, Pavel A. Pevzner:
Blocked Pattern Matching Problem and Its Applications in Proteomics. 298-319 - William Stafford Noble, Zhi-jun Duan
A Three-Dimensional Model of the Yeast Genome. 320 - Andrew S. Parker, Karl E. Griswold
Optimization of Combinatorial Mutagenesis. 321-335 - Hanchuan Peng, Fuhui Long:
Seeing More Is Knowing More: V3D Enables Real-Time 3D Visualization and Quantitative Analysis of Large-Scale Biological Image Data Sets. 336 - Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
T-IDBA: A de novo Iterative de Bruijn Graph Assembler for Transcriptome - (Extended Abstract). 337-338 - Tobias Petri, Robert Küffner, Ralf Zimmer
Experiment Specific Expression Patterns. 339-354 - Yosef Prat, Menachem Fromer, Michal Linial
Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles. 355-357 - Shlomi Reuveni
A Ribosome Flow Model for Analyzing Translation Elongation - (Extended Abstract). 358-360 - Kyle E. Roberts, Patrick R. Cushing, Prisca Boisguerin
Design of Protein-Protein Interactions with a Novel Ensemble-Based Scoring Algorithm. 361-376 - Kerstin Scheubert, Franziska Hufsky, Florian Rasche, Sebastian Böcker
Computing Fragmentation Trees from Metabolite Multiple Mass Spectrometry Data. 377-391 - Emre Sefer
Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction. 392-407 - Solomon Shenker, Charles W. O'Donnell, Srinivas Devadas, Bonnie Berger, Jérôme Waldispühl
Efficient Traversal of Beta-Sheet Protein Folding Pathways Using Ensemble Models. 408-423 - Dana Silverbush, Michael Elberfeld, Roded Sharan:
Optimally Orienting Physical Networks. 424-436 - Song Gao, Niranjan Nagarajan
Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. 437-451 - Jae Hoon Sul, Buhm Han, Eleazar Eskin:
Increasing Power of Groupwise Association Test with Likelihood Ratio Test. 452-467 - Ryan Tarpine, Fumei Lam, Sorin Istrail:
Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection. 468-482 - Chittaranjan Tripathy, Jianyang Zeng, Pei Zhou
Protein Loop Closure Using Orientational Restraints from NMR Data. 483-498 - Fabio Vandin, Eli Upfal
De Novo Discovery of Mutated Driver Pathways in Cancer. 499-500 - Jérôme Waldispühl
An Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes under Evolutionary Pressure. 501-515 - Fabian L. Wauthier, Michael I. Jordan
Nonparametric Combinatorial Sequence Models. 516-530 - Yun Yu, Tandy J. Warnow, Luay Nakhleh:
Algorithms for MDC-Based Multi-locus Phylogeny Inference. 531-545 - Shay Zakov, Yoav Goldberg, Michael Elhadad
Rich Parameterization Improves RNA Structure Prediction. 546-562 - Jianyang Zeng, Kyle E. Roberts, Pei Zhou
A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data. 563-578
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