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12th ISMB / 3. ECCB 2004: Glasgow, Scotland, UK (Supplement of Bioinformatics)
- Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, Glasgow, UK, July 31-August 4, 2004. 2004
- Janet M. Thornton, David R. Gilbert, Catherine Brooksbank
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ISMB/ECCB 2004. 1-2 - Janet M. Thornton, David R. Gilbert, Catherine Brooksbank:
ISMB/ECCB 2004 Organization. 3-5 - Kiyoko F. Aoki
Application of a new probabilistic model for recognizing complex patterns in glycans. 6-14 - Chitta Baral, Karen Chancellor, Tran Hoai Nam, Nhan Tran, Anna M. Joy, Michael E. Berens:
A knowledge based approach for representing and reasoning about signaling networks. 15-22 - Ziv Bar-Joseph, Shlomit Farkash, David K. Gifford, Itamar Simon, Roni Rosenfeld
Deconvolving cell cycle expression data with complementary information. 23-30 - Gill Bejerano, David Haussler, Mathieu Blanchette:
Into the heart of darkness: large-scale clustering of human non-coding DNA. 40-48 - Marshall W. Bern, David Goldberg
Automatic Quality Assessment of Peptide Tandem Mass Spectra. 49-54 - Doron Betel
Analysis of domain correlations in yeast protein complexes. 55-62 - Emidio Capriotti
A neural-network-based method for predicting protein stability changes upon single point mutations. 63-68 - Robert Castelo
Splice site identification by idlBNs. 69-76 - Shann-Ching Chen, Ivet Bahar:
Mining frequent patterns in protein structures: a study of protease families. 77-85 - Sarah Cohen Boulakia
Selecting biomedical data sources according to user preferences. 86-93 - Lachlan James M. Coin
Improved techniques for the identification of pseudogenes. 94-100 - Michiel J. L. de Hoon
Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data. 101-108 - Christoph Dieterich, Sven Rahmann
Functional inference from non-random distributions of conserved predicted transcription factor binding sites. 109-115 - Hernán Dopazo
Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species. 116-121 - Angela Enosh, Sarel Jacob Fleishman
Assigning transmembrane segments to helices in intermediate-resolution structures. 122-129 - Richard A. George, Ruth V. Spriggs
SCOPEC: a database of protein catalytic domains. 130-136 - Gideon Greenspan, Dan Geiger:
High density linkage disequilibrium mapping using models of haplotype block variation. 137-144 - Cigdem Gunduz, Bülent Yener, S. Humayun Gultekin:
The cell graphs of cancer. 145-151 - Naohiko Heida, Yoshikazu Hasegawa, Yoshiki Mochizuki, Katsura Hirosawa, Akihiko Konagaya, Tetsuro Toyoda:
TraitMap: an XML-based genetic-map database combining multigenic loci and biomolecular networks. 152-160 - Vladimir Jojic, Nebojsa Jojic, Christopher Meek, Dan Geiger, Adam C. Siepel
Efficient approximations for learning phylogenetic HMM models from data. 161-168 - Cliff A. Joslyn, Susan M. Mniszewski, Andy W. Fulmer, Gary Heaton:
The Gene Ontology Categorizer. 169-177 - Peter V. Kharchenko, Dennis Vitkup, George M. Church
Filling gaps in a metabolic network using expression information. 178-185 - Gunnar W. Klau
Optimal robust non-unique probe selection using Integer Linear Programming. 186-193 - Dennis Kostka, Rainer Spang
Finding disease specific alterations in the co-expression of genes. 194-199 - Mehmet Koyutürk
An efficient algorithm for detecting frequent subgraphs in biological networks. 200-207 - Hongzhe Li, Jiang Gui:
Partial Cox regression analysis for high-dimensional microarray gene expression data. 208-215 - Gerton Lunter
A nucleotide substitution model with nearest-neighbour interactions. 216-223 - Robert M. MacCallum
Striped sheets and protein contact prediction. 224-231 - Manuel Middendorf, Anshul Kundaje
Predicting genetic regulatory response using classification. 232-240 - Sven Mika, Burkhard Rost
Protein names precisely peeled off free text. 241-247 - Iftach Nachman
Inferring quantitative models of regulatory networks from expression data. 248-256 - Stephen A. Racunas, N. H. Shah, István Albert
HyBrow: a prototype system for computer-aided hypothesis evaluation. 257-264 - Benjamin J. Raphael, Pavel A. Pevzner:
Reconstructing tumor amplisomes. 265-273 - David J. Reiss, Benno Schwikowski
Predicting protein-peptide interactions via a network-based motif sampler. 274-282 - Alexander Schliep
Robust inference of groups in gene expression time-courses using mixtures of HMMs. 283-289 - Padmini Srinivasan
Mining MEDLINE for implicit links between dietary substances and diseases. 290-296 - Kellathur N. Srinivasan, Guanglan Zhang, Asif M. Khan
Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigens. 297-302 - Robert D. Stevens, Hannah J. Tipney, Chris Wroe
Exploring Williams-Beuren syndrome using myGrid. 303-310 - Radek Szklarczyk, Jaap Heringa:
Tracking repeats using significance and transitivity. 311-317 - Phil Trinh, Aoife McLysaght
Genomic features in the breakpoint regions between syntenic blocks. 318-325 - Koji Tsuda, William Stafford Noble:
Learning kernels from biological networks by maximizing entropy. 326-333 - Zasha Weinberg
Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy. 334-341 - Daniela Wieser, Ernst Kretschmann, Rolf Apweiler
Filtering erroneous protein annotation. 342-347 - M. D. Woodhams, Michael D. Hendy:
Reconstructing phylogeny by Quadratically Approximated Maximum Likelihood. 348-354 - Weijia Xu, Willard J. Briggs, Joanna Padolina, Ruth E. Timme
Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes. 355-362 - Yoshihiro Yamanishi, Jean-Philippe Vert
Protein network inference from multiple genomic data: a supervised approach. 363-370 - Changhui Yan, Drena Dobbs
A two-stage classifier for identification of protein-protein interface residues. 371-378 - Mehdi Yousfi Monod, Véronique Giudicelli
IMGT/JunctionAnalysis: the first tool for the analysis of the immunoglobulin and T cell receptor complex V-J and V-D-J JUNCTIONs. 379-385 - Mohammed Javeed Zaki
Predicting protein folding pathways. 386-393
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