Starting from significant local suboptimal alignments, the application of transitivity allows us to (1) identify distant repeat homologues for which no alignments were found; (2) gain confidence about consistently well-aligned regions; and (3) recognize and reduce the contribution of non-homologous repeats.
Aug 4, 2004
In this paper, we introduce the method TRUST (Tracking. Repeats Using Significance and Transitivity), which is able to detect internal sequence repeats based on ...
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In this paper, we introduce the method TRUST (Tracking. Repeats Using Significance and Transitivity), which is cap- able of detecting internal sequence repeats ...
In this review, we attempt to describe the amino acid repeat-detection algorithms currently available and compare their strategies based on an in-depth analysis ...
Sep 24, 2015 · Swelfe quickly identifies statistically significant internal repeats in DNA sequence, in the amino acid sequence and in the 3D structures using ...
Sep 14, 2015 · Here we describe the TAndem PrOtein detector (TAPO) that uses periodicities of atomic coordinates and other types of structural representation.
Computational methods use different properties of protein sequences and structures to find, characterize and annotate protein tandem repeats.
Repeat or not repeat?—statistical validation of tandem repeat prediction in ... Tracking repeats using significance and transitivity. ,. Bioinformatics. ,. 2004.
Oct 9, 2015 · Different TR detection tools use their own scoring procedures to determine the boundary between repetitive and non-repetitive protein sequences.
Tandem repeats with short repetitive units (especially homorepeats) are more frequent than others. ... "Tracking repeats using significance and transitivity".