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BIOCOMP 2008: Las Vegas, Nevada, USA
- Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2008, July 14-17, 2008, Las Vegas Nevada, USA, 2 Volumes. CSREA Press 2008, ISBN 1-60132-055-8
Sequence and Structure Alignment of Macro Molecules
- Arthur Chou, Shan Lu:
A Dynamic Programming Approach to the Study of Protein Sequence Variations. BIOCOMP 2008: 3-8 - Xiaodong Wang, Lei Wang, Yingjie Wu:
An Efficient Algorithm for the Longest Pattern Subsequence Problem. BIOCOMP 2008: 9-14
Biomolecular Pathways and System Biology
- Babak Shahbaba, Eva Prenosil, Anjali Jain, Sylvia K. Plevritis:
A modified Dirichlet process mixture model for clustering phosphopeptides based on their response to anti-cancer drug perturbation. BIOCOMP 2008: 17-22 - Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke:
Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis. BIOCOMP 2008: 23-28 - Jens Lichtenberg, Edwin Jacox, Mary Qu Yang, Laura Elnitski, Lonnie R. Welch:
Word-Based Characterization of the Bidirectional Promoters from the Human DNA-Repair Pathway. BIOCOMP 2008: 29-33 - Jens Lichtenberg, Paul Morris, Klaus Ecker, Lonnie R. Welch:
Discovery of Regulatory Elements in Oomycete Orthologs. BIOCOMP 2008: 34-38 - Anke Meyer-Bäse, Fabian J. Theis:
Stochastic Stability Analysis of the Heat Shock Response in E. Coli. BIOCOMP 2008: 39-42 - Chun-Ju Chang, Pen-Hui Yin, Chun-Hui Wang, Chin-Wen Chi, Yau-Huei Wei, Hsin-Chen Lee:
Mitochondrial Stress-induced Genes and Pathways Changes in Human Hepatoma Cells. BIOCOMP 2008: 43-49 - Minseo Park:
An Efficient Intelligent Binary Tree for Alternative Splice Site Detection. BIOCOMP 2008: 50-54 - Frank Emmert-Streib, Andre S. Ribeiro:
Optimize Observational Time Points to Maximize the Inferability of Gene Networks. BIOCOMP 2008: 55-60 - Anthony Palumbo, Jack Schryver, Susan Pfiffner, Terence Marsh, Craig Brandt:
Relating Microbial Community Structure to a Dominant Environmental Variable in a Complex Environment: An Example from a Chromium Contaminated Site. BIOCOMP 2008: 61-67 - Kenneth Sundberg, Daniel Ence, Daniel Wilcox, Quinn Snell, Mark J. Clement:
Genomic Scale Reconstruction of Gene Regulatory Networks from Microarray Data. BIOCOMP 2008: 68-71
Phylogenetic Reconstruction and Molecular Evolution
- Roger A. Craig, Keyur Malaviya, Krishna Balasubramanian, Li Liao:
Inferring functional linkage from residue level co-evolution information. BIOCOMP 2008: 75-80 - Kenneth Sundberg, Hyrum Carroll, Quinn Snell, Mark J. Clement:
Incomparability of Results Between Phylogenetic Search Programs. BIOCOMP 2008: 81-84 - Pinghao Wang, Bing Bing Zhou, Chen Wang, Zhen Zhao, Albert Y. Zomaya:
An Integrative Approach to Phylogenetic Inference. BIOCOMP 2008: 85-90 - Xin Liu, Li-Mei Zhang, Jun Yin, Ya-Pu Zhao:
Major factors of protein evolution revealed by eigenvalue decomposition analysis. BIOCOMP 2008: 91-97 - Chen-Hui Lin, Justie Juan:
Computing the Mixture Distance Between Mixture Trees. BIOCOMP 2008: 98-103 - Pinghao Wang, Bing Bing Zhou, Chen Wang, Pang Bo, Albert Y. Zomaya:
A Multi-criteria Phylogenetic Reconstruction Method. BIOCOMP 2008: 104-110 - Rishi Mukhopadhyay, John Rose:
Does Nucleotide Compositional Bias Explain Amino Acid Usage in Viral Genomes?. BIOCOMP 2008: 111-115 - Liviu Badea:
Tracking the Dimensional Evolution of Gene Expression Biclusters. BIOCOMP 2008: 116-121 - Sridhar Ramachandran, Travis E. Doom:
Validation of the Human Alu phylogeny: a whole-genome analysis. BIOCOMP 2008: 122-128
Gene Expression and Data Analysis
- Nan Mei, Mugimane G. Manjanatha, Mizuo Azuma, Lea P. McDaniel, Stacey L. Dial, Jo Tseng, Wayne Liao, Lei Guo:
Liver Gene Expression Profile of Mice Treated with Acrylamide in Drinking Water. BIOCOMP 2008: 131-137 - Tamanna Howlader, Yogendra P. Chaubey:
Bivariate Estimator for cDNA Microarray Images Using Complex Wavelets. BIOCOMP 2008: 138-144 - Humberto Ortiz-Zuazaga, Tim Tully, Oscar Moreno:
Majority Logic Decoding for Probe-level Microarray Data. BIOCOMP 2008: 145-150 - Hossam S. Sharara, Mohamed A. Ismail:
BISOFT: A Semi-Fuzzy Approach For BiClustering Gene Expression Data. BIOCOMP 2008: 151-157 - Sapana Kumari, Huann-Sheng Chen:
PC-Relief-F Feature Filtering Algorithm: Application and Utilization in Selecting Informative Genes from Microarray Data. BIOCOMP 2008: 158-163 - Hong Zhou, Xiao Zeng, Joseph Manthey:
Discoveries in shRNA Design. BIOCOMP 2008: 164-169 - Edward Salinas, Amitava Karmaker:
Analysis of Correlations between Genes and Triads of Transcription Factors Using Microarray Expression Profiles. BIOCOMP 2008: 170-174 - Vinhthuy Phan, E. Olusegun George, Quynh T. Tran, Thomas R. Sutter:
Toward a Combinatorial Approach to the Sample Size Problem in Multiple-treatment Microarray Studies. BIOCOMP 2008: 175-181 - Anthony J. Bagnall, Simon Moxon, David J. Studholme, Vincent Moulton:
Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana. BIOCOMP 2008: 182-188
Gene Identification and Clustering
- Ting Gong, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke:
Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information. BIOCOMP 2008: 191-197 - Jian Song, Jason D. Gans, Murray Wolinsky, Po-E Li, Emily Curd, Chris Detter, Hong Cai:
Algorithms for Designing the Minimal Set of Multiplexed Degenerate Universal Tagged Primers for RNA Virus Detection. BIOCOMP 2008: 198-202 - Sing-Wu Liou, Yin-Fu Huang:
Mining Intronic Sequence Features of Splice Sites with Depth-Breadth Fused Codon Analyses. BIOCOMP 2008: 203-209 - Muhammed Al-Mulhem:
Stochastic Context Free Grammar for RNA Modeling: An Overview. BIOCOMP 2008: 210-213 - John R. Rose, Achraf El Allali:
Mutual Information Measure for Distinguishing Coding and Non-Coding DNA Sequences. BIOCOMP 2008: 214-219 - Kumar Abhishek, Harish Karnick:
GO Based Hierarchical Framework for Inference of Gene Regulatory Networks. BIOCOMP 2008: 220-225 - Xuan Vinh Nguyen:
Gene Clustering on the Unit Hypersphere with the Spherical K-Means Algorithm: Coping with Extremely Large Number of Local Optima. BIOCOMP 2008: 226-233 - Padmanabhan Mahadevan, Donald Seto:
Data Mining Pathogen Genomes Using GeneOrder and CoreGenes: Gene Order, Synteny, and Proteomes. BIOCOMP 2008: 234-240 - Paul Dan Cristea, Rodica Tuduce:
Use of Nucleotide Genomic Signals in the Analysis of Variability and Inserts in Prokaryote Genomes. BIOCOMP 2008: 241-247 - Uma Devi Tatavarthi, V. Nageswara Rao Padmanabhuni, Allam Appa Rao:
Promoter Prediction using Horspool's Algorithm. BIOCOMP 2008: 248-250 - Golagani Lavanya Devi, Rao Allamappa, A. Damodaram, G. R. Sridhar, G. Jaya Suma:
Fuzzy C-Means Algorithm for Clustering Protein Sequences. BIOCOMP 2008: 251-255 - T. Sobha Rani, Raju S. Bapi:
E.coli Promoter Recognition Through Wavelets. BIOCOMP 2008: 256-262
Medical Diagnostic Tools and Methods
- Igor Szczyrba, Martin Burtscher, Rafal Szczyrba:
On the Role of a Nonlinear Stress-Strain Relation in Brain Trauma. BIOCOMP 2008: 265-271 - Giovanni Rinaldi, Mike Martin, Massimo Busuoli:
A Federative Approach For a Virtual Community In Elderly Care: A Different Way In ECare. BIOCOMP 2008: 272-278 - Tai Nguyen-Ky, Peng (Paul) Wen, Yan Li:
Modified Detrended Fluctuation Analysis Method in Depth of Anesthesia Assessment Application. BIOCOMP 2008: 279-284 - Roman Andrushkiw, Dmitry Klyushin, Lyudmila Ostapchenko, Yuriy Petunin, Ivan Sirenko, Natalya Boroday:
Combined Correlation-Proximity Test for Breast Cancer and Fibroadenomatosis. BIOCOMP 2008: 285-288 - Jon Plumley, Richard Gatward, Alison Todman, Raouf N. Gorgui-Naguib, Mark K. Bennett:
Observation and Reporting Experiment Undertaken in the Development of an Image Desription Language for the Reporting by Pathologists of the Grading of Cancers. BIOCOMP 2008: 289-293 - Sally Atkinson, Babak Akhgar, Jawed I. A. Siddiqi, Alicia Grudz, Alexandra Ihatowicz, Massimo Gulisano, Lorenzo Memeo, Peter Scriven:
MATCH: A Decision Support System for Integration of Biomedical Data. BIOCOMP 2008: 294-297 - Paola Lecca:
Stochastic pi-Calculus Models of the Molecular Bases of Parkinson's Disease. BIOCOMP 2008: 298-304 - Silvana Cunha Costa, Benedito G. Aguiar Neto, Joseana M. Fechine:
Laryngeal Pathology Detection by LPC and LPC-based Cepstral Analysis. BIOCOMP 2008: 305-310 - Gustavo Adolfo Martinez Chavez:
Recirculation in Vascular Access for Hemodialysis Treatment by Employ the on_line Mesuring System of Urea in Blood. BIOCOMP 2008: 311-314 - Uma T. Shankavaram, Sudhir Varma, David W. Kane, Margot Sunshine, Krishna Chary, William C. Reinhold, John N. Weinstein:
CellMiner: A Database Tool for the NCI-60 Cancer Cell Lines. BIOCOMP 2008: 315-323 - Roman Andrushkiw, Yuriy Petunin, Dmitry Klyushin, Yulia Lozovskaya, Andrey Romanov:
Correlation Algorithm for Cytogenetic Method of Breast Cancer Diagnosis. BIOCOMP 2008: 324-327 - Loretta Ichim, Radu Dobrescu, Catalin Vasilescu:
Two Dimensional Modeling and Computer Simulation of Tumor Growth. BIOCOMP 2008: 328-333 - Tapas Kumar Basak, Subramani Murugappan, Velanganny Cyrilraj, Thiruvengadam Ramanujam, Thavasi anantham Ravi:
Data Mining of Capacitance Relaxation Phenomena in classifying Breast Cancer Cell. BIOCOMP 2008: 334-339 - Gillian Jones, Gillian Pearce, Matthew Smith:
Using Simple Computer Exercises to Assist in the Rehabilitation of Stroke Patients : A Prototype. BIOCOMP 2008: 340-344 - El Menouar Salah, Braham Salah, Abd Elkrim Salah:
Vital Medical Imaging Multimode Cyto-Histo-Anatomical Computing Systems. BIOCOMP 2008: 345-351 - Keo-Sik Kim, Yang Su An, Jeong-Hwan Seo, Chul-Gyu Song:
An algorithm for estimation of abdominal pressure by electromyography. BIOCOMP 2008: 352-357
Application of Engineering Techniques and Mathematics in Medicine and Biology
- Jingwei Zhang, Layne T. Watson, Masha Sosonkina, Yang Cao:
Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation. BIOCOMP 2008: 361-367 - Getachew K. Befekadu, Mahlet G. Tadesse, Habtom W. Ressom:
Probabilistic-Based Mixture Regression Models for Multi-Class Alignment of LC-MS Data. BIOCOMP 2008: 368-373 - M. L. D. Ponce, Junhua Ding, Mohammad H. N. Tabrizi:
Identifying Factors that Improve the Predictive Quality of BMI for Health Status. BIOCOMP 2008: 374-378 - Haihui Wang, Yijun Chang, Pan Du:
Application of Framelet Transform to the MS-based Proteomics Data Preprocessing. BIOCOMP 2008: 379-382 - Yung-Hsing Peng, Chang-Biau Yang, Chiou-Ting Tseng, Chiou-Yi Hor:
Efficient Sparse Dynamic Programming for the Merged LCS Problem. BIOCOMP 2008: 383-388 - Xi Wang, D. W. Kim, Kil To Chong:
Evaluation Of The Deformity Of Cleft Nose Based On Statistical And Neural Network. BIOCOMP 2008: 389-395 - Alessandro Brawerman, Mauricio Perretto:
A Group Monitoring Wireless System for Health Care Monitoring. BIOCOMP 2008: 396-400 - Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom:
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling. BIOCOMP 2008: 401-407 - Omid Ghasemalizadeh, Mohammad Reza Mirzaee, Bahar Firoozabadi, Kamran Hassani:
Exact Modeling of Cardiovascular System Using Lumped Method. BIOCOMP 2008: 408-417 - Xinyu Que, Fa Zhang, Shengzhong Feng, Bo Yuan, Zhiyong Liu:
An improvement method based on OrthoMCL by adding the domain information. BIOCOMP 2008: 418-423 - Andrzej Kudlicki, Maga Rowicka, Zbyszek Otwinowski:
Significance-Testing of Periodogram for Short Time Series. BIOCOMP 2008: 424-430 - Tae-Hyuk Ahn, Yang Cao, Layne T. Watson:
Stochastic Simulation Algorithms for Chemical Reactions. BIOCOMP 2008: 431-436 - Renat A. Sultanov, Dennis Guster, Brent Engelbrekt, Richard Blankenbecler:
A Full Dimensional Numerical Study of Pulsatile Human Blood Flow in Aortic Arch. BIOCOMP 2008: 437-443 - Marios M. Hadjiandreou, Raúl Conejeros, Vassilios S. Vassiliadis, D. Ian Wilson:
Long-Term HIV Dynamics: Mathematical Modeling and Optimal Control. BIOCOMP 2008: 444-450 - Frank M. You, Ming-Cheng Luo, Yong Qiang Gu, Gerard R. Lazo, Jan Dvorak, Olin D. Anderson:
An Algorithm for Discrimination of Multiple-Fragment Peaks in Capillary Fingerprinting Chromatograms. BIOCOMP 2008: 451-456 - Tetsuya Hirotomi, Yasutomo Hosomi:
Gait Analysis on the Use of Four-castered Walker and Elderly-simulation Suit. BIOCOMP 2008: 457-463 - Iraj Derakhshan:
The Slower Side Marches to a Distant Drummer: A Fresh Look at the Results of a Paper and Pencil Test for Laterality of Motor Control. BIOCOMP 2008: 464-469 - Iraj Derakhshan:
Right Handers Breathe with Left Hemisphere: Handedness and the Risk of Sudden Death in Hemispheric Stroke in NASCET. BIOCOMP 2008: 470-477 - Lizhen Yang, Zhaobin Wang, Yide Ma, Feiyan Cheng, Qingxiang Gao:
Extraction of Interested Objects in Botanic Somatic Embryo Images. BIOCOMP 2008: 478-482 - Keo-Sik Kim, Jeong-Hwan Seo, Chul-Gyu Song:
Classification of normal and abnormal knee joint using back-propagation neural network. BIOCOMP 2008: 483-488 - Chul-Gyu Song, Keo-Sik Kim, Jeong-Hwan Seo:
Comparison of acoustical parameters of knee sound according to pathological condition for pattern extraction. BIOCOMP 2008: 489-493 - Chul-Gyu Song, Keo-Sik Kim, Yang Su An, Jeong-Hwan Seo:
Optimum electrode configuration to estimate abdominal pressure using regression analysis of bio-impedance signal. BIOCOMP 2008: 494-499
Bioinformatics and Medical Informatics
- John C. Mazziotta, Arthur W. Toga:
Computational Neuroinformatics - Basic Science and Clinical Applications. BIOCOMP 2008: 503-512 - Roxanne Tapia, Gary Xie, Ravi D. Barabote, Gerry Myers, Thomas S. Brettin:
Streptococcus in Toto: A Species-specific Comparative Analysis Website Prototype. BIOCOMP 2008: 513-517 - Jingao Dong, Srinivas Iyer, Christy Ruggiero, Murray Wolinsky, Jian Song:
Bioinformatic Analysis of Iron Acquisition Systems in Bacillus anthracis. BIOCOMP 2008: 518-526 - Jonathan L. Lustgarten, Shyam Visweswaran, Himanshu Grover, Vanathi Gopalakrishnan:
An Evaluation of Discretization Methods for Learning Rules from Biomedical Datasets. BIOCOMP 2008: 527-532 - Mukesh Doble:
Mathematical Analysis of EEG Signals of Patients with Prion Dsease. BIOCOMP 2008: 533-537 - Fei Xia, Yong Dou, Jiaqing Xu:
Fine-Grained Parallel Zuker Algorithm Accelerator with Storage Optimization on FPGA. BIOCOMP 2008: 538-544 - Xiong Liu, Hassan A. Karimi:
Semantic Discovery of Protein Web Services. BIOCOMP 2008: 545-550 - Frank Drews, Eric Petri, Jens Lichtenberg, Lonnie R. Welch:
Scalable Parallel Word Search in Multi-Core/Multiprocessor Systems. BIOCOMP 2008: 551-557 - Elena S. Peterson, Eric G. Stephan, Abbie Corrigan, Roberto D. Lins, Thereza A. Soares, Randy Scarberry, Stuart Rose, Leigh Williams, Canhai Lai, Terence Critchlow, Tjerk P. Straatsma:
Northwest Trajectory Analysis Capability: A Platform for Enhancing Biophysics Analysis. BIOCOMP 2008: 558-562 - Kai-Chieh Yang, Ming-Chi Jhuang, Chun-Shun Tseng, Jhan-Syuan Yu, Jung-Hua Wang:
Improved Segmentation Based on Probabilistic Labeling. BIOCOMP 2008: 563-567 - Syed Omair Hasan, Shmuel Rotenstreich:
An Organizational Framework of Personal Health Records for Social Networks. BIOCOMP 2008: 568-572 - Carol Lushbough, Volker Brendel:
An Overview of the BioExtract Server - a Distributed, Web Based Application for Bioinformatic Analysis. BIOCOMP 2008: 573-578 - Elena Sini, Paolo Locatelli, Nicola Restifo:
Integrated ICT approach to improve clinical processes in healthcare organizations: a case study. BIOCOMP 2008: 579-586 - Hiroshi Kamabe:
Combinations of Context-Free Shifts and Shifts of Finite Type. BIOCOMP 2008: 587-593 - Tapas Kumar Basak, Thavasi Anandam Ravi, Velankanni Cyrilraj, Gurusamy Gunansekaran, Thiruvenngadam Ramanujam:
Bioinformatics for Leukemia(MDS) Associated with Bone Marrow Depression. BIOCOMP 2008: 594-600 - Pasquale Capasso, Antonio Picariello:
BioInView: Integration and Querying of Heterogeneous Biological Data Sources. BIOCOMP 2008: 601-607 - Carol Lushbough, Jon Duvick, Qunfeng Dong, Douglas M. Jennewein, Joe Reynoldson, Volker Brendel:
TableMaker: An ad hoc Query Tool for Relational Databases. BIOCOMP 2008: 608-611 - Kuha Mahalingam, Omar Bagasra:
Bioinformatics Tools: Searching for Markers in DNA/RNA Sequences. BIOCOMP 2008: 612-615
Structure and Dynamics of Macro Molecules
- Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Inverse protein folding in 3D hexagonal prism lattice under HP model. BIOCOMP 2008: 619-625 - Sara Rahmati, Janice I. Glasgow:
Noise Tolerance of the Universal Similarity Metric Applied to Protein Contact Map Comparison in Two Dimensions. BIOCOMP 2008: 626-632 - Rishi Mukhopadhyay, Paul Shealy, Homayoun Valafar:
Protein Fold Family Recognition From Unassigned Residual Dipolar Coupling Data. BIOCOMP 2008: 633-638 - Oyun-Erdene Namsrai, Garmaa Dangaasuren, Keun Ho Ryu:
A new algorithm for RNA secondary structure prediction and fast method for prediction of simple H-type pseudoknots. BIOCOMP 2008: 639-645 - Paul Shealy, Rishi Mukhopadhyay, Stephen Smith, Homayoun Valafar:
Automated Assignment of Backbone Resonances Using Residual Dipolar Couplings Acquired from a Protein with Known Structure. BIOCOMP 2008: 646-652 - Ivana Mihalek:
Blueprint for an Algorithm for Conformational Transformation Tolerant Search Through a Database of Protein Structures. BIOCOMP 2008: 653-659 - Mark A. Olson, In-Chul Yeh, Michael S. Lee:
Molecular Dynamics Simulations of Folding and Insertion of the Ebola Vrus Fusion Peptide into a Membrane Bilayer. BIOCOMP 2008: 660-665 - Reetal Pai, James C. Sacchettini, Thomas R. Ioerger:
Analysis of Protein-Ligand Interactions Using Localized Stereochemical Features. BIOCOMP 2008: 666-673 - Zaixin Lu, Zhiyu Zhao, Sergio García, Bin Fu:
New Algorithm and Web Server for Finding Proteins with Similar 3D Structures. BIOCOMP 2008: 674-680 - Sandeep Deshmukh, Aniket Dalal, Pramod P. Wangikar:
GIPSCo: A Method for Comparison of Protein Structures Based on Geometric Invariants. BIOCOMP 2008: 681-687 - Tarek F. Gharib, Ahmed Salah, Ibrahim M. El-Henawy, Abdel-Badeeh M. Salem:
Protein Structure Searching using Suffix Arrays. BIOCOMP 2008: 688-691 - Shih-Yen Ku, Yuh-Jyh Hu:
Using Protein Structural Alphabet to Characterize Local Structure Features. BIOCOMP 2008: 692-697
Metablomics, Proteomic and Protein Function
- Harold J. Drabkin, Cecilia N. Arighi, Cathy H. Wu, Judith A. Blake:
Functional Annotation of Protein Isoforms and Modified Forms. BIOCOMP 2008: 701-707 - Christopher M. Frenz:
The Role of Protein Electrostatics in Facilitating the Catalysis of DEAD-box Proteins. BIOCOMP 2008: 708-712 - Zhiwen Yu, Zhongkai Deng, Hau-San Wong:
K-Nearest Neighbor Classifier Ensemble for Prediction of Phosphorylation Sites. BIOCOMP 2008: 713-717 - Hongbo Zhou, Qiang Shawn Cheng, Mehdi R. Zargham:
Prediction of Protein Function Using Graph Container and Message Passing. BIOCOMP 2008: 718-723 - Changjiang Zhang, Wensheng Shen, Kimberly Forsten-Williams, Michael Fannon, Jun Zhang:
Simulation of FGF-2 Binding with Receptors on Cell Surface on the Wall in a Bioreactor System. BIOCOMP 2008: 724-727 - Omar Gaci, Stefan Balev:
Proteins: From Structural Classification to Amino Acid Interaction Networks. BIOCOMP 2008: 728-734 - Gregory Martyn, Christopher M. Frenz:
ESPSim: A JAVA Application for Calculating Electrostatic Potential Map Similarity Scores. BIOCOMP 2008: 735-737 - Elizabeth Timko, Paul Shealy, Michael Bryson, Homayoun Valafar:
Minimum Data Requirements and Supplemental Angle Constraints for Protein Structure Prediction with REDCRAFT. BIOCOMP 2008: 738-744
Algorithms and Models + Tools + Intelligent Drug Design
- Tiago Antao, Ian M. Hastings, Peter McBurney:
Ronald: A Domain-Specific Language to Study the Interactions Between Malaria Infections and Drug Treatments. BIOCOMP 2008: 747-752 - Shih-Fang Lin, Ke-Ting Xiao, Chung-Cheng Chiu, Von-Wun Soo:
Classifying Proteins Related to Adverse Drug Reactions from Drug Targets Using Support Vector Machines. BIOCOMP 2008: 753-759 - Koji Tashima, Naoko Izumi, Naoki Yonezaki:
A Quantitative Semantics of Formal Ontology of Drug Interactions. BIOCOMP 2008: 760-766 - Sridhar Ramachandran, Dayananda Sagar Gangadharaiah:
No Tale in the Tail. BIOCOMP 2008: 767-774 - Iraj Derakhshan:
Laterality of Motor Control and its Robotic Applications: A Paper and Pencil Method for Lateralizing the Major (Action, Thought) Hemisphere. BIOCOMP 2008: 775-786 - Reetal Pai, James C. Sacchettini, Thomas R. Ioerger:
Specificity Normalization for Identifying Selective Inhibitors in Virtual Screening. BIOCOMP 2008: 787-793 - Klaus Ecker, Jens Lichtenberg, Lonnie R. Welch:
The SiteSeeker Motif Discovery Tool. BIOCOMP 2008: 794-797
Genetic Network Modeling and Inference
- Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng:
Inferring Gene Regulatory Network of Yeast Cell-Cycle using Dynamic Bayesian Network. BIOCOMP 2008: 801-805 - Mehdi Pirooznia, Ping Gong, Chaoyang Zhang, Edward J. Perkins, Youping Deng:
Creating a Workflow for Expressed Sequence Tags Analysis. BIOCOMP 2008: 806-808
Bioinformatics and Applied Genomics in Latin America
- Roberto C. Togawa, Crisitna Ribeiro, Ivan Mazoni, Thais Pelligrinelli, José G. Jardine, Goran Neshich:
The Table of Interface Forming Residues as the Specificity Indicator for Serine Proteases Bound to Different Inhibitors. BIOCOMP 2008: 811-817 - Gustavo Santos, Italo M. C. Maia, Fabiana F. Araújo, Ana Carolina L. Pacheco, Sarah Medeiros, Carla R. F. Gadelha, Samara C. Silva, Raimundo Araujo-Filho, Diana M. Oliveira:
HiperMUSCLE: An Intuitive Graphical User Interface for the Multiple Sequence Alignment Program MUSCLE (Edgar, 2004). BIOCOMP 2008: 818-824 - Alex S. M. Ferraz, André A. N. Machado, Francisco F. U. Santos Júnior, Jamille S. M. Alves, Gandhi Rádis-Baptista, Kaprice F. F. de Sales, Diana M. de Oliveira, Sandra M. D. Moraes, José H. Leal-Cardoso, Valdenize Tizziani, Vânia M. Ceccatto:
Predictive evidence of phosphorylation sites using in silico resources and 2-D-gel of gastrocnemic muscle proteins as analytical model. BIOCOMP 2008: 825-831
Late Papers
- Yiannis N. Kaznessis, Vassilios Sotiropoulos, Anthony D. Hill, Jonathan R. Tomshine, Katherine Volzing, John Barrett, Emma M. B. Weeding:
Multiscale Models for Synthetic Biology. BIOCOMP 2008: 835-837 - Nan Wang, Changhe Yuan, Shane C. Burgess, Bindu Nanduri, Mark L. Lawrence, Susan Bridges:
Integrating Evidence for Evaluation of Potential Novel Protein-coding Genes Using Bayesian Networks. BIOCOMP 2008: 838-843 - Chen Ke, Zhu Qingxin:
Similarity Search for Sequence Based On Grouped Seeds Criterion with Optimal Search Mechanism. BIOCOMP 2008: 844-847 - Abdelhak Kheniche, Abdellah Salhi, Andrew Harrison, John M. Dowden:
A Deterministic Algorithm for DNA Sequence Comparison. BIOCOMP 2008: 848-854 - Avinash Shankaranarayanan, Christine Amaldas:
TandemXP - A Computational Approach to Finding Approximate Tandem Repeats in Genomic Sequences. BIOCOMP 2008: 855-861 - Md. Rezaul Bashar, Yan Li, Peng Wen:
Tissue Conductivity Anisotropy Inhomogeneity Study in EEG Head Modelling. BIOCOMP 2008: 862-867 - Qingxin Zhu, Fan Yang, Ke Chen:
Optimal Search Model for Combined Strategy in Sequence Alignment. BIOCOMP 2008: 868-874 - Avinash Shankaranarayanan, Christine Amaldas:
A Computational Framework for Performance Optimization of Bioinformatics ClustalW. BIOCOMP 2008: 875-881 - M. Abdul Mottalib, Rahat Hossain:
Identification of Representative Protein Sequence and Secondary Structure Prediction using SVM Approach. BIOCOMP 2008: 882-886 - Rajesh Singla, Hari Singh:
Analysis of Physiological Measures for Human Cognitive State Estimation. BIOCOMP 2008: 887-890 - Satya Vani Guttula, Allam Appa Rao, G. R. Sridhar, M. S. Chakravarthy, Kunjum Nageshwararo, Paturi V. Rao, Hanuman Thota:
Cluster Analysis and Phylogenetic Relationship in Biomarker Identification of Microarray Data of Type 2 Diabetes and Nephropathy in Asian Indians. BIOCOMP 2008: 891-896 - Fred Peng, Frederic Pio:
Computational Detection of TFBS in Apoptotic Protein Complexes. BIOCOMP 2008: 903-909 - Said Hassan Ahmed, Tor Flå:
A Method to Identify Essential Features of Cold-adapted Enzymes. BIOCOMP 2008: 910-917 - Kresimir Sikic, Branko Jeren, Sanja Tomic:
The Protein Secondary Structure Flexibility. BIOCOMP 2008: 918-826 - Kresimir Sikic, Branko Jeren, Sanja Tomic:
Identifying Protein Flexibility by NMA. BIOCOMP 2008: 927-933 - Fabio Mavelli, Marco Lerario, Kepa Ruiz-Mirazo:
ENVIRONMENT: A Stochastic Simulation Platform to Study Protocell Dynamics. BIOCOMP 2008: 934-941 - Ionut Bebu, Françoise Seillier-Moiseiwitsch, Hongfang Liu:
Analysis of Microarray Titration Experiments. BIOCOMP 2008: 942-946 - Chris Stowers, Erik Boczko:
Platescale: The Birthday Problem Applied to Single Molecule PCR. BIOCOMP 2008: 947-953 - Arwa Al-Sultan, M. Arif Wani:
Hybrid Approach Based on Principal Component and Multiple Discriminant Analysis for Microarray Classification. BIOCOMP 2008: 954-960 - Liangjiang Wang:
BindN+ for Improved Prediction of DNA or RNA Binding Residues in Protein Sequences Using Evolutionary Information. BIOCOMP 2008: 961-964 - Taskeed Jabid, Mohammad Shoyaib, Syed Murtuza Baker, Firoz Anwar, Md. Mehedi Hasan:
Protein-Protein Interaction Detection from Primary Structure using Support Vector Machine. BIOCOMP 2008: 965-969 - Yu-Ting Huang, Shih-Fang Lin, Von-Wun Soo:
Statistical Analysis on Detecting Signals of Adverse Drug Events with Drug-Drug Interactions. BIOCOMP 2008: 970-976 - Ki-Young Kim, Ho-Seok Song, Jung-Ju Lee:
Development of a Human arm-liked Robotic Surgical System with Force Measurement for Laparoscopic Surgery. BIOCOMP 2008: 977-983 - Chang Hun You, Lawrence B. Holder, Diane J. Cook:
Dynamic Graph-based Relational Learning of Temporal Patterns in Biological Networks Changing over Time. BIOCOMP 2008: 984-990 - Xiaoyun Sun, Pengyu Hong:
Improving Automatic Inference of the Biological Network Governing C. elegans Vulval Induction by Incorporating Interaction Data. BIOCOMP 2008: 991-997 - Hiroaki Kimura, Hajime Kitakami, Kotaro Araki, Keiichi Tamura:
A Stepwise Generalization Method for Extracting Minimum Generalized Set from Mismatch Cluster. BIOCOMP 2008: 998-1004 - Yu-Chun Lin, Hsiang-Yuan Yeh, Cheng-Yu Yeh, Von-Wun Soo:
A Robust Network Alignment Algorithm for Detecting Evolutionarily Conserved Networks and Protein Complexes Across Species. BIOCOMP 2008: 1005-1011 - Firoz Anwar, Syed Murtuza Baker, Mohammad Shoyaib, Taskeed Jabid, Md. Mehedi Hasan:
Identification of Gene using Machine Learning Technique. BIOCOMP 2008: 1012-1014 - Gaolin Zheng, Tonny Sangutei, Yingjun Cao:
A Case Study of Genetic influence via Principal Component Analysis and Bayesian Factor Analysis. BIOCOMP 2008: 1015-1021 - Harold Vasquez, Ana Isabel Aguilera, Leonid Tineo:
Fuzzy Ontology Based Querying. BIOCOMP 2008: 1022-1027 - Taner Kaya, Dima Kozakov, Sandor Vajda:
Clustering versus Scoring for the Identification of Near-Native Poses in Protein-Ligand Docking. BIOCOMP 2008: 1028-1032 - Hanuman Thota, Sivaprasad Akula, Kunjum Nageswara Rao, Suresh Babu Changalasetty, Apparao Allam, Lalitha Saroja Thota:
Bioinformatics Aspects in Diabetic Neuropathy Using Functional Protein Sequences. BIOCOMP 2008: 1033-1039 - Ping Gong, Mehdi Pirooznia, Xin Guan, J. Cristobal Vera, Chun Liang, Youping Deng, Chaoyang Zhang, Edward J. Perkins:
A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags. BIOCOMP 2008: 1040-1043
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