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8th BCB 2017: Boston, MA, USA
- Nurit Haspel, Lenore J. Cowen, Amarda Shehu, Tamer Kahveci, Giuseppe Pozzi:
Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2017, Boston, MA, USA, August 20-23, 2017. ACM 2017, ISBN 978-1-4503-4722-8
Session 1: Cancer Genomics and Inferring Phylogenies and Haplotypes
- Paola Bonizzoni
, Simone Ciccolella
Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via ILP. 1-10 - Yi-Pin Lai, Thomas R. Ioerger:
A Compatibility Approach to Identify Recombination Breakpoints in Bacterial and Viral Genomes. 11-20 - Fransiskus Xaverius Ivan, Xinrui Zhou
Phylogenetic Tree based Method for Uncovering Co-mutational Site-pairs in Influenza Viruses. 21-26
Session 2: Text Mining and Classification
- Margherita Zorzi
Mapping Free Text into MedDRA by Natural Language Processing: A Modular Approach in Designing and Evaluating Software Extensions. 27-35 - Yanshan Wang
Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical Literature. 36-43 - Adel M. ElMessiry, Zhe Zhang, William O. Cooper, Thomas F. Catron, Jan Karrass, Munindar P. Singh
Leveraging Sentiment Analysis for Classifying Patient Complaints. 44-51 - Arman Cohan
Identifying Harm Events in Clinical Care through Medical Narratives. 52-59
Session 3: Proteins and RNA Structure, Dynamics, and Analysis I
- Indika Kahanda
GOstruct 2.0: Automated Protein Function Prediction for Annotated Proteins. 60-66 - Mauricio Oberti
Identification and Prediction of Intrinsically Disordered Regions in Proteins Using n-grams. 67-72 - Alexander Rosenberg Johansen, Casper Kaae Sønderby, Søren Kaae Sønderby, Ole Winther
Deep Recurrent Conditional Random Field Network for Protein Secondary Prediction. 73-78
Session 4: Genomic Variation and Disease
- Yao Yao
CERENKOV: Computational Elucidation of the Regulatory Noncoding Variome. 79-88 - Alan M. Cleary, Indika Kahanda
Exploring Frequented Regions in Pan-Genomic Graphs. 89-97 - Andrew Quitadamo, James Johnson, Xinghua Shi:
Bayesian Hyperparameter Optimization for Machine Learning Based eQTL Analysis. 98-106 - Hussein A. Hejase, Natalie Vande Pol, Gregory M. Bonito, Patrick P. Edger, Kevin J. Liu
Coal-Miner: A Statistical Method for GWA Studies of Quantitative Traits with Complex Evolutionary Origins. 107-114
Session 5: Clinical Databases and Information Systems
- Chongyu Zhou, Yao Jia, Mehul Motani, Jingwei Chew:
Learning Deep Representations from Heterogeneous Patient Data for Predictive Diagnosis. 115-123 - Hsueh-Chien Cheng, Rainer von Coelln, Ann L. Gruber-Baldini, Lisa M. Shulman, Amitabh Varshney
Winnow: Interactive Visualization of Temporal Changes in Multidimensional Clinical Data. 124-133 - Francesca Cristiano, Giuseppe Tradigo, Pierangelo Veltri
Associating Genomics and Clinical Information by Means of Semantic Based Ranking. 134-141 - Fabiana Lorenzi, Rodrigo G. da Rosa, Alessandra Peres, Gilson Pires Dorneles
Tailoring Training for Obese Individuals with Case-Based Reasoning. 142-147
Session 6: Big Data in Bioinformatics I
- Hamid Mushtaq, Frank Liu, Carlos Costa, Gang Liu, H. Peter Hofstee, Zaid Al-Ars:
SparkGA: A Spark Framework for Cost Effective, Fast and Accurate DNA Analysis at Scale. 148-157 - He Zhou, Sunil P. Khatri, Jiang Hu, Frank Liu, Cliff C. N. Sze:
Fast and Highly Scalable Bayesian MDP on a GPU Platform. 158-167 - Chieh Lo, Radu Marculescu:
Inferring Microbial Interactions from Metagenomic Time-series Using Prior Biological Knowledge. 168-177 - Sergio Salinas, Pan Li
Secure Cloud Computing for Pairwise Sequence Alignment. 178-183
Session 7: Advancing Algorithms and Methods I
- Laraib Malik, Rob Patro:
Rich Chromatin Structure Prediction from Hi-C Data. 184-193 - Alexey Markin, Oliver Eulenstein:
Cophenetic Median Trees Under the Manhattan Distance. 194-202 - Sunyoung Kwon
DeepCCI: End-to-end Deep Learning for Chemical-Chemical Interaction Prediction. 203-212
Session 8: Automated Diagnosis and Prediction I
- Ye Yuan, Guangxu Xun
A Multi-view Deep Learning Method for Epileptic Seizure Detection using Short-time Fourier Transform. 213-222 - Alevtina Dubovitskaya, Thierry Buclin
TUCUXI: An Intelligent System for Personalized Medicine from Individualization of Treatments to Research Databases and Back. 223-232 - Ying Sha, May D. Wang
Interpretable Predictions of Clinical Outcomes with An Attention-based Recurrent Neural Network. 233-240 - Zhaoheng Ni, Ahmet Cem Yuksel, Xiuyan Ni, Michael I. Mandel, Lei Xie:
Confused or not Confused?: Disentangling Brain Activity from EEG Data Using Bidirectional LSTM Recurrent Neural Networks. 241-246
Session 9: Protein and RNA Structure, Dynamics, and Analysis II
- Roshanak Farhoodi, Max Shelbourne, Rebecca Hsieh, Nurit Haspel, Brian Hutchinson
Predicting the Effect of Point Mutations on Protein Structural Stability. 247-252
Session 10: Advancing Algorithms and Methods II
- Jucheol Moon, Oliver Eulenstein:
Synthesizing Species Trees from Unrooted Gene Trees: A Parameterized Approach. 253-262 - Chelsea J.-T. Ju, Ruirui Li, Zhengliang Wu, Jyun-Yu Jiang, Zhao Yang, Wei Wang
Fleximer: Accurate Quantification of RNA-Seq via Variable-Length k-mers. 263-272 - Xuefu Wang, Sujun Li, Wenjing Peng, Yehia Mechref
A Sparse Latent Regression Approach for Integrative Analysis of Glycomic and Glycotranscriptomic Data. 273-278 - Pourya Naderi Yeganeh
Use of Structural Properties of Underlying Graphs in Pathway Enrichment Analysis of Genomic Data. 279-284
Session 11: Applications to Microbes and Imaging Genetics
- Zheng Xu
Seq2seq Fingerprint: An Unsupervised Deep Molecular Embedding for Drug Discovery. 285-294 - Ahmed A. Metwally
Detection of Differential Abundance Intervals in Longitudinal Metagenomic Data Using Negative Binomial Smoothing Spline ANOVA. 295-304 - Zi Wang
Cell Neighbor Determination in the Metazoan Embryo System. 305-312 - Mostafa M. Abbas, Yasser El-Manzalawy:
Predictive and Comparative Network Analysis of the Gut Microbiota in Type 2 Diabetes. 313-320
Session 12: Systems Biology I
- Lu Zhu, Martin Ester:
Bayesian Collective Markov Random Fields for Subcellular Localization Prediction of Human Proteins. 321-329 - Raghvendra Mall
Differential Community Detection in Paired Biological Networks. 330-339 - Huey-Eng Chua, Sourav S. Bhowmick
TINTIN: Exploiting Target Features for Signaling Network Similarity Computation and Ranking. 340-345
Session 13: Knowledge Representation Applications
- Zhila Esna Ashari Esfahani, Kelly A. Brayton, Shira L. Broschat:
Determining Optimal Features for Predicting Type IV Secretion System Effector Proteins for Coxiella burnetii. 346-351 - Hasan M. Jamil
Knowledge Rich Natural Language Queries over Structured Biological Databases. 352-361 - Nisansa de Silva
Discovering Inconsistencies in PubMed Abstracts through Ontology-Based Information Extraction. 362-371 - Ryan Suderman
TRuML: A Translator for Rule-Based Modeling Languages. 372-377
Session 14: Integrative Methods for Genomic Data
- Edward W. Huang, Sheng Wang, Bingxue Li
HEMnet: Integration of Electronic Medical Records with Molecular Interaction Networks and Domain Knowledge for Survival Analysis. 378-387 - Soon Jye Kho
A Novel Approach for Classifying Gene Expression Data using Topic Modeling. 388-393 - Junfeng Liu, Xia Ning:
Differential Compound Prioritization via Bi-Directional Selectivity Push with Power. 394-399
Session 15: Sdequence Analysis and Genome Assembly
- Yi Li, Daniel Quang, Xiaohui Xie:
Understanding Sequence Conservation With Deep Learning. 400-406 - Ilya Y. Zhbannikov, Samuel S. Hunter, James A. Foster, Matthew L. Settles:
SeqyClean: A Pipeline for High-throughput Sequence Data Preprocessing. 407-416 - Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru:
Distributed Memory Partitioning of High-Throughput Sequencing Datasets for Enabling Parallel Genomics Analyses. 417-424 - Kanak Mahadik, Christopher Wright, Milind Kulkarni, Saurabh Bagchi, Somali Chaterji:
Scalable Genomic Assembly through Parallel de Bruijn Graph Construction for Multiple K-mers. 425-431
Session 16: Applications to Healthcare Processes
- Ramyar Saeedi, Keyvan Sasani, Assefaw Hadish Gebremedhin:
Co-MEAL: Cost-Optimal Multi-Expert Active Learning Architecture for Mobile Health Monitoring. 432-441 - Jon B. Long, Yingyuan Zhang, Vladimir Brusic
Antidote Application: An Educational System for Treatment of Common Toxin Overdose. 442-448 - Mengnan Zhao, Christopher C. Yang:
Automated Off-label Drug Use Detection from User Generated Content. 449-454
Session 17: Biological Modeling
- Hannah De Los Santos, Emily J. Collins, Jennifer M. Hurley
Circadian Rhythms in Neurospora Exhibit Biologically Relevant Driven and Damped Harmonic Oscillations. 455-463 - Mansooreh Ahmadian
Hybrid ODE/SSA Model of the Budding Yeast Cell Cycle Control Mechanism with Mutant Case Study. 464-473 - Qichun Zhang, Francisco Sepulveda:
RBFNN-based Modelling and Analysis for the Signal Reconstruction of Peripheral Nerve Tissue. 474-479
Session 18: Systems Biology II
- Sriram P. Chockalingam, Maneesha Aluru, Hongqing Guo, Yanhai Yin, Srinivas Aluru:
Reverse Engineering Gene Networks: A Comparative Study at Genome-scale. 480-490 - Sultan Imangaliyev, Evgeni Levin:
Unsupervised Multi-View Feature Selection for Tumor Subtype Identification. 491-499 - Ali Atiia
Computational Intractability Generates the Topology of Biological Networks. 500-509 - Huiyuan Chen, Jing Li
A Flexible and Robust Multi-Source Learning Algorithm for Drug Repositioning. 510-515
Session 19: Automated Diagnosys and Prediction II
- Jingyun Choi, Yejin Kim, Hun-Sung Kim, In Young Choi, Hwanjo Yu:
Tensor-Factorization-Based Phenotyping using Group Information: Case Study on the Efficacy of Statins. 516-525 - Hang Wu, May D. Wang
Infer Cause of Death for Population Health Using Convolutional Neural Network. 526-535 - Richard Platania, Shayan Shams, Seungwon Yang, Jian Zhang, Kisung Lee, Seung-Jong Park
Automated Breast Cancer Diagnosis Using Deep Learning and Region of Interest Detection (BC-DROID). 536-543 - Viktor Chekh, Peter Soliz, Mark R. Burge, Shuang Luan:
A Physiological Thermal Regulation Model with Application to the Diagnosis of Diabetic Peripheral Neuropathy. 544-549
Session 20: Big Data in Bioinformatics II
- Muaaz Gul Awan
An Out-of-Core GPU based Dimensionality Reduction Algorithm for Big Mass Spectrometry Data and Its Application in Bottom-up Proteomics. 550-555 - Bjørn Fjukstad, Vanessa Dumeaux
Building Applications for Interactive Data Exploration in Systems Biology. 556-561 - Mitchell Dawson, Andrew Zisserman, Christoffer Nellåker:
Mining Faces from Biomedical Literature using Deep Learning. 562-567 - Elham Rastegari, Hesham H. Ali:
A Correlation Network Model Utilizing Gait Parameters for Evaluating Health Levels. 568-574
Poster Session
- Meera Garg:
Study of Antidepressant Molecular Structure Leading to Safer Dosing. 575 - Naveena Yanamala, Marlene S. Orandle, Vamsi K. Kodali, Lindsey M. Bishop, Patti C. Zeidler-Erdely, Jenny R. Roberts, Vincent Castranova, Aaron D. Erdely:
Supervised Machine Learning Approaches Predict and Characterize Nanomaterial Exposures: MWCNT Markers in Lung Lavage Fluid. 576 - Brandon A. Saiz, Padmanabhan Mahadevan:
Prokaryotic Autolysin Database Construction. 578 - Basma Abdelkarim, Vincent Maranda, Guy Drouin:
The Fate of Retrotransposed Processed Genes in Arabidopsis Thaliana. 579 - Basma Abdelkarim, Theodore J. Perkins:
Super-enhancer Dynamics Throughout Myogenesis. 580 - Abdelrahman Hosny, Fatima Zare, Sheida Nabavi:
Varsimlab: A Docker-based Pipeline to Automatically Synthesize Short Reads with Genomic Aberrations. 581 - Neda Hassanpour, Nicholas Alden, Kyongbum Lee, Soha Hassoun:
An Advanced Workflow for Metabolite Annotation. 582 - Salvador Eugenio C. Caoili:
Development of a Polymer-Theoretic Approach to Describing Constraints on Reactions Between Antipeptide Antibodies and Intrinsically Disordered Peptide Antigens: Implications for B-Cell Epitope Prediction. 583 - Huixiao Hong, Carmine Leggett, Suguna Sakkiah:
Development of Nicotinic Acetylcholine Receptor nAChR α7 Binding Activity Prediction Model: Coupling Machine Learning with Competitive Molecular Docking. 584 - Margaret Okomo-Adhiambo
Automated Next Generation Sequencing Bioinformatics Pipelines for Pathogen Discovery and Surveillance. 585 - S. M. Ashiqul Islam, Christopher Michel Kearney, Ankan Choudhury, Erich J. Baker:
Protein Classification using Modified N-Gram and Skip-Gram Models: Extended Abstract. 586 - Xiaoli Jiao, Hiromi Imamichi, Tauseef Rehman, Rishub Nahar, Robin L. Dewar, H. Clifford Lane, Tomozumi Imamichi, Brad T. Sherman:
Self-Tuning Spectral Clustering for Full-length Viral Quasispecies Reconstruction with PacBio Long Reads. 587 - Wen Zou
Best Setting of Model Parameters in Applying Topic Modeling on Textual Documents. 588 - Sora Kim, Han Sang Kim, Sangwoo Kim
Neopepsee: Accurate Genome-level Prediction of Neoantigens by Harnessing Sequence and Amino Acid Immunogenicity Information. 589 - Omid Ghiasvand, Mary Shimoyama:
Novel Unsupervised Named Entity Recognition Used in Text Annotation Tool (OntoMate) At Rat Genome Database. 590 - Fatima Zare, Sardar Ansari, Kayvan Najarian, Sheida Nabavi:
Bias and Noise Cancellation for Robust Copy Number Variation Detection. 591 - Soumi Ray, Adam Wright
Applying Bayesian Changepoint Model and Hierarchical Divisive Model for Detecting Anomalies in Clinical Decision Support Alert Firing. 592 - Sangkyu Lee, Sarah Kerns, Barry Rosenstein, Harry Ostrer, Joseph O. Deasy
Preconditioned Random Forest Regression: Application to Genome-Wide Study for Radiotherapy Toxicity Prediction. 593 - Naveen Mangalakumar, Abed Alkhateeb
Outlier Genes as Biomarkers of Breast Cancer Survivability in Time-Series Data. 594 - Tamsen Dunn, Gwenn Berry, Dorothea Emig-Agius, Yu Jiang, Anita Iyer, Nitin Udar, Michael Strömberg:
Pisces: An Accurate and Versatile Single Sample Somatic and Germline Variant Caller. 595 - Michael Strömberg, Rajat Roy, Julien Lajugie, Yu Jiang, Haochen Li, Elliott H. Margulies:
Nirvana: Clinical Grade Variant Annotator. 596 - León F. Toro, Laura Pinilla-Mendoza, Rigoberto Ríos-Estepa
Streptomyces Clavuligerus Constraint-Based Modeling and Gene Expression Analysis for Clavulanic Acid Production. 597 - Dong Liu, Anastasia I. Kousa, Simon R. Tomlinson, C. Clare Blackburn:
Notch Signaling Plays an Important Role in mTEC Specification during Fetal Thymus Development. 598 - Olivia M. Ahern, Rebecca J. Stevick
Analysis of 16S Genomic Data using Graphical Databases. 599 - Varshini Guddanti, Shawn Horvatic, Jie Zhou, Yujia Hu, Bing Ye:
High Dimensional Ensemble Neuronal Activity Pattern Analysis: Visualization and Wave Detection Focused. 600 - Shaojun Tang, Suthee Rapisuwon, Anton Wellstein, Subha Madhavan:
Tumor Neoantigens Derived from RNA Sequencing Analysis. 601 - Sherry Bhalla, Suresh Sharma, Gajendra Pal Singh Raghava
Challenges in Prediction of different Cancer Stages using Gene Expression Profile of Cancer Patients. 602 - Bruno Dantas, Calmenelias Fleitas, Alexandre Almeida, João Forja, Alexandre P. Francisco
NGSPipes: Fostering Reproducibility and Scalability in Biosciences. 603 - Alexandre P. Francisco
Dynamic Phylogenetic Inference for Sequence-based Typing Data. 604 - Manal Othman, Sujay Ratna
Classification and Prediction of Antimicrobial Peptides Using N-gram Representation and Machine Learning. 605 - Anastasiya Belyaeva, Saradha Venkatachalapathy, Mallika Nagarajan, G. V. Shivashankar, Caroline Uhler:
Network Analysis Identifies Regulatory Hotspots in Regions of Chromosome Interactions. 606 - Ashraf Abou Tabl, Abed Alkhateeb
Machine Learning Model for Identifying Gene Biomarkers for Breast Cancer Treatment Survival. 607 - Zewon Park, Ko-Woon Choi, Doo Won Seo, Sunae Ryu, Jong Gu Lee, Woo Yong Oh:
Genome-Wide Association Study (GWAS) for the Infliximab Responsiveness in Korean Inflammatory Bowel Disease Patients. 608-609 - Ali Foroughi Pour, Lori A. Dalton:
Integrating Prior Information with Bayesian Feature Selection. 610 - Lei Li, Mukul S. Bansal:
An Integrated Reconciliation Framework for Domain, Gene, and Species Level Evolution. 611 - Soumya Kundu, Mukul S. Bansal:
Assessing the Impact of Uncertain Gene Tree Rooting on Phylogenetic Reconciliation Using a Simulation Framework. 612 - Alexander J. Paul, Dylan Lawrence
Overlap Graph Reduction for Genome Assembly using Apache Spark. 613 - Blake Camp, Jaya Mandivarapu, Jay Mehta, Nagashayana Ramamurthy, James Wingo, Anu G. Bourgeois, Xiaojun Cao, Rajshekhar Sunderraman:
A Cross-Platform System Architecture for Form Design and Data Analytics for Public Health. 614 - Aly Valliani, Ameet Soni:
Deep Residual Nets for Improved Alzheimer's Diagnosis. 615 - Yashita Jain, Shanshan Ding
Integrative Sufficient Dimension Reduction Methods for Multi-Omics Data Analysis. 616 - Huy Quang Pham, Luis Rueda, Alioune Ngom:
Predicting Breast Cancer Outcome under Different Treatments by Feature Selection Approaches. 617 - Ibrahim Youssef
Breaking Ties in Weighted Interactomes. 618 - Ahmed Metwally, Christian Ascoli, Kalista Andropolis, Ravi Ranjan, Yang Dai, Thomas Ferkol, Patricia W. Finn, David L. Perkins:
Microbiome Dynamics as Predictors of Lung Transplant Rejection. 619 - Aseel Awdeh, Theodore J. Perkins:
Analysis of Controls in ChIP-seq. 620 - Alex V. Kotlar, Cristina E. Trevino, Michael E. Zwick, David J. Cutler, Thomas S. Wingo
SeqAnt: Cloud-Based Whole-Genome Annotation and Search. 621 - Linfeng Liu, Soha Hassoun:
A Tool for Predicting the Dark Side of Enzymes. 622 - Vladimir Porokhin, Xinmeng Li, Soha Hassoun:
Pathway Enrichment Analysis for Untargeted Metabolomics. 623 - Xinmeng Li, James Van Deventer, Soha Hassoun:
Towards the Design of Matrix Metalloproteinases (MMP) Antibody Sequences. 624 - Sara A. Amin, Venkatesh Endalur Gopinarayanan, Nikhil U. Nair, Soha Hassoun:
ProSol DB: A Protein Solubility Database. 625 - Jisoo Park, Benjamin J. Hescott, Donna K. Slonim:
Building a Molecular Taxonomy of Disease. 626 - Uday Yallapragada, Iosif I. Vaisman:
Network Analysis of Correlated Mutations in Influenza. 627
Tutorials
- Kevin Molloy, David Morris, Amarda Shehu:
ACM-BCB '17 Tutorial: Robotics-inspired Algorithms for Modeling Protein Structures and Motions. 628 - Yaron Orenstein:
Computational Modeling of Protein-RNA Interactions. 629 - Ilya Y. Zhbannikov, Konstantin G. Arbeev:
Stochastic Process Model and Its Applications to Analysis of Longitudinal Data. 630 - Alistair E. W. Johnson, Tom J. Pollard
Analyzing the eICU Collaborative Research Database. 631
Invited Keynote Talks
- Shawn N. Murphy:
Instrumenting the Health Care Enterprise for Discovery in the Course of Clinical Care. 632 - Dagmar Ringe:
Challenges of Drug Design. 633 - Tandy J. Warnow:
Genome-scale Estimation of the Tree of Life. 634
Highlights
- Amarda Shehu, Tamer Kahveci, Giuseppe Pozzi:
Highlights Talks at ACM BCB 2017. 635 - Michael R. Brent:
Model-based Transcriptome Engineering. 636 - Francesca Mulas, Chun Zeng, Yinghui Sui, Tiffany Guan, Nathanael Miller, Yuliang Tan, Fenfen Liu, Wen Jin, Andrea C. Carrano, Mark O. Huising, Orian Shirihai, Gene W. Yeo, Maike Sander:
Analysis of Single Cells on a Pseudotime Scale along Postnatal Pancreatic Beta Cell Development. 637 - Zachary Stanfield, Mustafa Coskun, Mehmet Koyutürk:
Drug Response Prediction as a Link Prediction Problem. 638 - Amélie Héliou, Dominik Budday, Rasmus Fonseca, Henry van den Bedem:
Fast, Clash-Free RNA Conformational Morphing using Molecular Junctions. 639 - Amanda J. Kedaigle
Network-based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package. 640 - Tuan Trieu, Jianlin Cheng:
3D Genome Structure Modeling by Lorentzian Objective Function. 641 - Jinbo Xu:
Folding Large Proteins by Ultra-Deep Learning. 642
Computational Structural Bioinformatics Workshop (CSBW)
- Nurit Haspel, Amarda Shehu, Kevin Molloy:
The 2017 Computational Structural Bioinformatics Workshop: CSBW 2017. 643 - Jonathan Howton, Joshua L. Phillips:
Computational Modeling of pH-dependent gp120-CD4 Interactions in Founder and Chronic HIV Strains. 644-649 - Tunazzina Islam, Michael Poteat, Jing He:
Analysis of ß-strand Twist from the 3-dimensional Image of a Protein. 650-654 - Erik Andersson, Filip Jagodzinski:
ProMuteHT: A High Throughput Compute Pipeline for Generating Protein Mutants in silico. 655-660 - Donald A. Adjeroh, Maen Allaga, Jun Tan, Jie Lin, Yue Jiang, Ahmed Abbasi
String-Based Models for Predicting RNA-Protein Interaction. 661-666 - Roshanak Farhoodi, Bahar Akbal-Delibas
Ranking Protein-Protein Binding Using Evolutionary Information and Machine Learning. 667-672 - Emmanuel Sapin, Kenneth A. De Jong, Amarda Shehu:
Evolving Conformation Paths to Model Protein Structural Transitions. 673-678 - Wanli Qiao, Tatiana Maximova
Statistical Analysis of Computed Energy Landscapes to Understand Dysfunction in Pathogenic Protein Variants. 679-684 - Michael Nissenson, Dong Si:
Automated Protein Chain Isolation from 3D Cryo-EM Data and Volume Comparison Tool. 685-690 - Peter Collins, Dong Si:
A Graph Based Method for the Prediction of Backbone Trace from Cryo-EM Density Maps. 691-697 - Stephanie Mason, Tim Woods, Brian Y. Chen, Filip Jagodzinski:
Investigating Rigidity Properties of Protein Cavities. 698-703 - Bruna Jacobson, Jon Christian L. David, Mitchell C. Malone, Kasra Manavi, Susan R. Atlas, Lydia Tapia:
Geometric Sampling Framework for Exploring Molecular Walker Energetics and Dynamics. 704-709 - Kasra Manavi, Sahba Tashakkori, Lydia Tapia:
Gaussian Mixture Models with Constrained Flexibility for Fitting Tomographic Tilt Series. 710-715 - Kamal Al-Nasr, Feras Yousef
Geometry Analysis for Protein Secondary Structures Matching Problem. 716-721
6th Workshop on Parallel and Cloud-based Bioinformatics and Biomedicine (ParBio)
- Mario Cannataro, John A. Springer:
ParBio'17: 6th Workshop on Parallel and Cloud-based Bioinformatics and Biomedicine. 722 - Taban Eslami, Muaaz Gul Awan
GPU-PCC: A GPU Based Technique to Compute Pairwise Pearson's Correlation Coefficients for Big fMRI Data. 723-728 - Allison M. Rossetto, Wenjin Zhou:
Ensemble Convolution Neural Network with a Simple Voting Method for Lung Tumor Detection. 729-734 - Oriehi Edisemi Destiny Anyaiwe
Fuzzy Prediction of Incipient Alzheimer's Disease cases from Mild Cognitive Impaired cases. 735-739 - Giuseppe Agapito
Using GenotypeAnalytics to Analyze Pharmacogenomic Datasets. 740-743 - Francesca Bertacchini, Eleonora Bilotta, Pietro S. Pantano:
Discovery of Regular Domains in Large DNA Data Sets. 744-749
4th International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)
- Byung-Jun Yoon, Xiaoning Qian, Tamer Kahveci:
CNB-MAC'17: The Fourth International Workshop on Computational Network Biology: Modeling, Analysis, and Control. 750 - Yang Ni, Peter Müller, Lin Wei, Yuan Ji:
Bayesian Graphical Models for Computational Network Biology. 751 - Sarah Hall-Swan, Jake Crawford, Rebecca Newman, Lenore J. Cowen:
Detangling PPI Networks to Uncover Functionally Meaningful Clusters. 752-753 - Lixin Cheng, Pengfei Liu, Kwong-Sak Leung:
SMILE: A Novel Procedure for Subcellular Module Identification with Localization Expansion. 754-755 - Guangming Liu, Bianfang Chai, Kuo Yang, Xuezhong Zhou
Overlapping Functional Modules Detection in PPI Network with Pairwise Constrained Nonnegative Matrix Tri-Factorization. 756-757 - Ali Foroughi Pour, Lori A. Dalton:
Heuristic Algorithms for Feature Selection under Bayesian Models with Block-diagonal Covariance Structure. 758-759 - Easton Li Xu, Xiaoning Qian, Qilian Yu, Han Zhang, Shuguang Cui
Feature Selection with Interactions in Logistic Regression Models using Multivariate Synergies for a GWAS Application. 760-761 - Ahmad Al Kawam, Mustafa Alshawaqfeh, James J. Cai
Simulating Variance Heterogeneity in Quantitative Genome Wide Association Studies. 762-763 - Abolfazl Hashemi, Banghua Zhu, Haris Vikalo
Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids. 764-765 - Alireza Karbalayghareh
Intrinsically Bayesian Robust Classifier for Single-Cell Gene Expression Time Series in Gene Regulatory Networks. 766-767 - Bertrand Miannay, Stéphane Minvielle, Olivier Roux, Florence Magrangeas, Carito Guziolowski
Constraints On Signaling Networks Logic Reveal Functional Subgraphs On Multiple Myeloma OMIC Data. 768-769 - Hao Zhang, Mary Qu Yang, Xiaoyue Feng, William Yang, Weida Tong, Renchu Guan:
Protein-Protein Interaction Extraction Using Attention-Based Convolution Neural Networks. 770-771 - Kevin Matlock, Carlos De Niz, Raziur Rahman, Souparno Ghosh, Ranadip Pal:
Investigation of Model Stacking for Drug Sensitivity Prediction. 772 - Ashish Katiyar, Anwoy Kumar Mohanty, Chao Sima, Jianping Hua, Rosana Lopes, Aniruddha Datta, Michael L. Bittner:
A Bayesian Approach to Determine the Composition of Heterogeneous Cancer Tissue. 773-774
6th Workshop on Computational Advances in Molecular Epidemiology (CAME 2017)
- Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology. 775
Workshop on Microbiomics, Metagenomics, and Metabolomics
- Soha Hassoun, Curtis Huttenhower:
A Workshop on Microbiomics, Metagenomics, and Metabolomics. 776
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