Biofuel Production Through Yeast Fermentation: Exercise Synopsis
Biofuel Production Through Yeast Fermentation: Exercise Synopsis
Biofuel Production Through Yeast Fermentation: Exercise Synopsis
Ethanol offers a valuable energy alternative to fossil fuels, which are both nonrenewable and contribute significantly to atmospheric pollution. Ethanol is often referred to as a biofuel since it can be manufactured by fermenting grains, plant biomass and other organic materials using microorganisms, such as yeast cells. Ethanol can be used as a fuel directly, but most often it is blended with gasoline (at about 5-10%) to yield gasohol. Since ethanol contains oxygen atoms (Figure 1), gasohol burns cleaner than regular gasoline, reducing emissions of carbon monoxide, nitrogen oxides and hydrocarbons. Although the raw materials used to produce ethanol are generally considered to be a renewable resource, there are practical and ethical issues that must be considered before society becomes too dependent upon this energy source (see Ethics of Biofuel Use below). Nevertheless, Figure 1. The molecular structure of ethanol is already making a significant contribution to ethanol. The presence of the oxygen world energy needs, and its use will certainly be atom makes ethanol a cleaner increasing. burning fuel then gasoline. Currently, ethanol production is measured in the billions of gallons. Canada and Brazil are major producers and users of this energy source, much of it derived from grains such as corn and wheat. To convert grain to ethanol, the grain is first milled into a fine powder and boiled to liquify the starch. The starch is then enzymatically broken down to release smaller sugars that can be readily fermented by microorganisms. The ethanol released during the fermentation process is later distilled from the liquid and further purified. Yeasts are the type of microorganism most commonly used to ferment grain into ethanol. Yeast have been used in fermentation processes for millennia, and their use is still the foundation of the baking and beverage brewing industries. Fermentation is part of the energy producing process called cellular respiration that is shared by essentially all cells. In this laboratory exercise, you will learn about yeast fermentation and the factors that affect its rate, and learn some of the basic principles of proper experimental design.
Objectives
This lab exercise has the following objectives: 1. To learn about the use of ethanol as an alternative energy source. 2. To further develop your ability to properly design an experiment and interpret the results. 3. To improve your understanding of cellular respiration and fermentation
Exercise Synopsis
Week 1: read assigned materials; run preliminary fermentation experiment. Week 2: read assigned materials; plan student-designed experiment; use Excel for graphing. Week 3: perform student designed experiment; graph and interpret results for week 4. Week 4: students present experiment, results and interpretations to class.
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Week 1
Before coming to lab for the first week of this lab exercise you should read the following sections on the bioethics of biofuel production and review the basic experimental methodology. You will graph the results and calculate fermentation rates, and the class will compare results and discuss sources of experimental error.
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ethanol production, with different studies showing either a net gain or loss when the energy inputs to ethanol production are compared to the energy yield (for example, compare Shapouri, 1995 and Pimentel, 2003). Development of alternative energy sources is not the only way to meet future energy needs. There are other root causes to potential future energy shortages, including overpopulation, increased energy consumption by developing nations, and excessive and wasteful energy usage by developed nations such as the U.S. We are unlikely to meet future energy needs by merely seeking to replace petroleum resources other changes in energy consumption habits must also occur.
EIA (Energy Information Administration). 2005. Short-Term Energy Outlook. November 2005. US Department of Energy Publication. Gardner G. 2000. Grain Area Shrinks. In: Brown LR, Renner M, Halweil B, editors. Vital Signs 2000. New York: WW Norton and Co. p 44 - 45. Pimentel, D. 2003. Ethanol Fuels: Energy Balance, Economics, and Environmental Impacts are Negative. Natural Resources Research 12:127-133. Shapouri H, Duffield, JA and Graboski MS. 1995. Estimating the Net Energy Balance of Corn Ethanol. USDA Agricultural Economic Report Number 721.
Experimental Procedure
In this week's lab you will study the rate of cellular respiration by yeast cells in the presence of a solution of glucose present at a concentration of 5% (w/v). The procedure you will use is described below. *** Each group member should perform his or her own experiment. *** 1. Add 10 ml of dH2O to a 50 ml flask. 2. Weigh out 1.0 g of glucose, place it in the flask and gently swirl until the carbohydrate is completely dissolved. 3. Using a 10 ml pipet, transfer 10 ml of the yeast suspension into the flask. 4. Allow the yeast suspension to incubate for 5 minutes, with occasional swirling. Page 79
5. Take up exactly 3 ml of the yeast suspension into a syringe. Invert the syringe and draw 1 ml of air above the liquid. 6. Complete the assembly of the respirometer (don't forget the water droplet), and place it into your test tube rack. 7. As soon as the water droplet reaches the 0 ml mark, begin taking measurements at 1 minute intervals and record the data in the tables on page 13. You can mark measurements using either the top or the bottom of the droplet, but be consistent. You may need to decrease the time interval between measurements as the rate of CO2 production increases. 8. Plot the raw data on graph paper, and draw a line through the linear part of the curve (Figure 4). Using only the linear part of the data calculate the slope of the line as change in volume change in time. This yields the rate of respiration in units of ml CO2 / minute. Table 1. Sample raw data Reading Time 0 min 3 6 7 8 9 11 0.18 ml 0.25 0.38 0.48 0.55 0.65 0.84 Figure 4. Graphing fermentation raw data. The raw data (Table 1, the actual CO2 volume measurements) is graphed as shown below. Note that the rate of fermentation is calculated from the slope of the line drawn through the linear part of the curve.
Analysis of results
The fermentation rate obtained by each student should be listed on the board. Each group should also calculate an average rate, and place this value on the board as well. These data will be used for a class discusson of the importance of replication in experimental design and potential sources of experimental error.
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What is fermentation? Fermentation is an enzymatic process that allows cells to obtain Figure 6. Overview of the reactions that occur during energy from carbohydrates even in the fermentation. The NADH produced during glycolysis is absence of oxygen. As described converted back into NAD to allow conversion of pyruvate above, in most organisms (and all into ethanol or lactic acid. The result is a net yield of only higher plants and animals) cellular 2 ATP. respiration requires the presence of oxygen (such organisms are said to be aerobic requiring of oxygen). If oxygen is not available to serve as the terminal electron acceptor, the electron transport pathway and then the Krebs cycle will shut down, just as an electric power plant that could not dispose of its waste products would eventually cease operations. (Each day a coalburning electric power plant produces tons of flyash the powdery ash collected from its smoke emissions which must be hauled away continuously for disposal in landfills. If the dump trucks that haul away this waste were to stop running, the power plant would soon become so inundated with flyash that it would have to shut down.) In a similar manner, if oxygen is not available to carry away the electrons moving through the electron transport pathway, the whole process of cellular respiration will grind to a halt. For aerobic organisms, the Krebs cycle and electron transport pathways do indeed cease to function in the absence of oxygen. However, glycolysis can continue if pyruvate is diverted to the fermentation pathway (Figure 6). The fermentation pathway provides a way for the cell to dispose of the pyruvate that otherwise would build up when the Krebs cycle is not functioning. During the fermentation process, the NADH produced during glycolysis is converted back to NAD. Thus, the fermentation pathway utilizes NADH that the cell would otherwise use to produce ATP, but it does allow glycolysis to continue in the absence of O2. Compared to aerobic respiration, the energy yield of glycolysis operating through fermentation is quite low, with a net yield of only 2 ATP per glucose. Indeed, this energy yield is too low to sustain the life of higher organisms, and plants and animals cannot live on glycolysis and fermentation alone. Some cells can function for a while on the energy provided by fermentation; for example, during strenuous activity, muscle cells continue to function for a short period of time in this manner. However, the amount of ATP produced anaerobically is too low to support the tremendous energy demands of our bodies, and this is why higher organisms suffocate in the absence of oxygen.
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How do yeast cells survive via fermentation? In the presence of oxygen, yeast cells will carry out the complete pathway of cellular respiration. However, yeast cells can survive and reproduce via fermentation alone. The ethanol and CO2 that are produced diffuse readily out into the environment surrounding the yeast cells. Single celled organisms can survive on fermentation alone for several reasons. On one hand, the energy needs of a single cell are much lower than those of a complex, multicellular organism. Also, yeast cells can import and metabolize carbohydrates very rapidly in effect compensating for the inefficiency of fermentation by processing greater quantities of carbohydrate. As a result, the yeast release great quantities of CO2 and ethanol during fermentation, which makes these organisms particularly useful to the biofuel industry.
WEEK 2
Before coming to the second lab session of the Biofuel exercise, you need to read the Biofuel Lab Internet Resource Page about the different variables that will affect yeast fermentation. During this lab period your group will discuss the variable your group will investigate during week 3, and also turn in a detailed experimental design and procedure. You will also learn how to use Excel to graph the data you obtained during week 1.
What are some variables that affect the rate of fermentation in yeast cells? Before leaving lab the first week, your group will select or be assigned a yeast fermentation parameter to investigate. The choices are listed below. Groups will be given the opportunity to select a topic, but some adjustment may need to be made to assure that each group in the class investigates a different topic. Further information about these factors is available in the web resource page, which can be accessed from http://marietta.edu/~biol/introlab/index105.html Type of carbohydrate. What are the rates of CO2 production when fermentation is allowed to proceed in the presence of glucose, fructose, lactose or sucrose? Concentration of carbohydrate. What is the effect of glucose over a range of 0% to 2% on the rate of yeast fermentation? Concentration of salt. How does varying the salt (NaCl) concentration over a range of 0 - 10% affect the rate of yeast fermentation? Ethanol concentration. What are the effects of varying the ethanol concentration in the fermentation mixture from 0% to 10% on yeast fermentation? pH. What is the effect of varying pH in the basic range (from pH 7 to pH 10) or in the acidic range (pH 3 to pH 7) on yeast fermentation? Temperature. What are the effects on yeast fermentation of temperatures over a range of 0OC to 60OC?
Calculating Concentration
For all of these experiments you must calculate the amount of a material dissolved in the fermentation mixture. Concentration is the most meaningful way to express this quantity. Concentration indicates the amount of a substance per unit volume of the liquid in which it is dissolved, and units of % w/v (percent weight/volume) or % v/v (percent volume/volume) are acceptable for this lab. When the substance being measured is added as a dry powder, % w/v should be used and is calculated by dividing the grams of the substance added by the final volume of the solution and multiplying by 100: grams of substance added % w/v = -----------------------------X 100 Final volume (ml) of solution For example, in the first week exercise you measured fermentation by yeast cells provided with 1 gram (g) of carbohydrate dissolved in a total volume of 20 milliliters (ml), which represents a concentration of 5% w/v.
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When the substance being measured is added as a liquid, % v/v should be used and is calculated by dividing the volume (ml) of the substance added by the final volume (ml) of the solution and multiplying by 100: ml of substance added % v/v = -----------------------------X 100 Final volume (ml) of solution For example, to make a 5% solution of ethanol in a mixture with a final volume of 20 ml, you would need to combine 1 ml of ethanol + 19 ml of the other components.
Week 3
Before coming to lab this week you should read the following sections on writing a lab report and graphing results. During week 3 of this lab exercise you will perform the experiment that you planned. (The results should be graphed prior to coming to lab next week)
Introduction
You should use information from at least five of the literature sources on reserve in the library for background information (see the web resource page for a list of these literature sources), since one of the goals of this exercise is to improve your ability to use library resources in an effective and meaningful way. In addition to these five literature sources, you can use your textbook, lab manual and web resource page as literature sources. The Background Information section should include information about fermentation, yeast, biofuel production, and the variable that your group is studying.
Procedures
You will thoroughly describe the experiment that your group performed this week, including the procedure for measuring yeast respiration described above. Remember, the procedure must be written in essay format, in the third person passive voice, and in enough detail for some else to repeat the experiment and obtain the same results. You are encouraged to include a picture of the respiration apparatus (with a figure legend).
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Results
Tables and Figures Note: all tables and graphs must be formatted (Figure numbers, title, axes labels, etc.) as described in the Lab Report Guidelines. Your lab report should include: 1. Graphs of all raw data, prepared on Excel, with trendlines drawn through the linear region of the data. To conserve paper, plot the raw data for all conditions of your variable for a given experimental replicate in a single figure; all lines must be distinguishable and clearly labeled. Do not include tables of the raw data. 2. A table of calculated respiration rates for each replicate and the averages. 3. A summary graph showing average respiration rates vs your independent variable. You should use the graph format appropriate to your variable. Description of Data 1. Describe the raw data for one typical replicate, but only describe any unusual aspects in the raw data from other replicates. 2. The summary graph that presents average fermentation rates represents the most important results of the experiment, and these results should be fully described.
Graphing Results Independent vs dependent variables It is not sufficient in a lab report to include only tables or graphs of the raw data (such as that shown in Table 1 and Figure 4). You must also summarize the calculated results in a suitable graphical form that reveals relationships between the variable you studied and the rate of fermentation. The results of your experiments will show the effect of some factor over a range of conditions (e.g., temperatures) on the rate of yeast fermentation. The results must be presented in an appropriate graphical form that best reveals any relationships that may exist. To do so, you must select the proper type of graph and plot the data correctly. The independent variable must be plotted on the X-axis (abscissa) and the dependent variable must be plotted on the y-axis. The independent variable is the one that you controlled during the experiment (e.g., time, pH, temperature, or type of carbohydrate). The dependent variable is the value that was measured or calculated during the experiment. In this case the dependent variable was either CO2 volume (ml) or the calculated respiration rate (ml CO2/min). In a properly designed experiment, the measured value is dependent upon the value of the independently controlled variable.
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The two types of graphs you are most likely to use are a bar graph and a line graph. A bar graph is appropriate when there is not a mathematical relationship between the values of the independent variable. For example, the results of a study of fermentation in the presence of different types of carbohydrates should be presented in a bar graph (see Figure 7) because there is no mathematical relationship between types of sugars. Figure 7. Fermentation rate in presence of different types of sugars.
0.12 Fermentation rate (ml CO /min) 2 0.1 0.08 0.06 0.04 0.02 0 Glucose Lactose Fructose Galactose Type of Carbohydrate
However, a line graph is only used when there is a mathematical or numerical relationship between the values of the independent variable. Examples include amount of sugar added, temperature of incubation, incubation time, etc. (see Figure 8). Notice that the data points are clearly marked and connected by a line. This type of graph helps to reveal trends and relationships in the data that can be described and interpreted in the report.
Week 4
Prior to coming to lab for week 4 you should read the following section on interpreting results. You should also consult reference materials about your research topic provided in the library. Each student should independently graph the results obtained during the previous week on Excel. A copy of all graphs will be turned in. During the lab period each group will work together to interpret the results of the experiment and prepare a 10 minute oral presentation describing the procedure, results and interpretations.
you explain how the results are ambiguous. If the results contradict your hypothesis, then you should offer an appropriate alternative conclusion. There are other issues that should be addressed as you interpret the results. Your interpretations for this experiment should assess whether the variable you studied showed an optimum or maximal value. The effect of quantitative variables (a factor that can be varied by a quantitative amount, e.g., temperature, amount of sugar, etc.) on a process generally show one of two patterns. When the rates from a series of experiments where the variable differs quantitatively are plotted, sometimes the rate of the reaction decreases at values above and below a particular optimal value (Figure 9). Other variables may show a maximal value, above which the rate remains constant (Figure 10). You should interpret results based upon your knowledge of cellular and/or enzymatic processes. Why might the variable you studied show an optimal or maximal pattern? What processes in the cell (properties of membranes, enzyme, pathways, etc) would account for the results you obtained?
Figure 9. Sample results showing an optimal value. These data show that the rate of fermentation is highest when the independent variable has a value of 5 (the optimal value).
0.1 fermentation rate (ml CO2/min) 0.08 0.06 0.04 0.02 0 0 2 4 6 8 10 Value of Independendent Variable
Figure 10. Sample results showing a maximal value. These data show that the rate of fermentation does not increase when the value of the independent variable exceeds 8 (the maximal value).
Fermentation Rate (ml CO2/min)
You should also explain how your results compare with the results of similar studies available in literature sources. You should consult the Biofuel Lab Internet Resource Page and reference material available in the library (some are on reserve). You should also describe the implications of your findings in context of biofuel production. How would you apply your findings if you were actually attempting to improve the process? What are the implications for a biofuel production process when your variable shows a optimal or maximal value? Do you believe that your findings afford a means to significantly improve biofuel production? Why or why not? Even if your results support your hypothesis, you should also propose a future experiment (a single, well described experiment is best); for example, you might suggest an experiment to refine your data, or possibly control for another variable. If your results contradicted your hypothesis or were ambiguous, you might propose an experiment that would test an alternative hypothesis.
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reading ____ ml ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____ ____
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Experimental Plan
Group members: Each group will turn in a plan describing the experiment you will perform during week 3 of the Biofuel fermentation lab. The group should work together to plan the experiment and answer the questions. You should feel free to consult with the lab instructor as necessary.
1. What question are you seeking to answer? What variable will you be testing?
4. Describe in detail the procedure you will use. (Write it neatly on the back.) Include a table that lists the components (and concentrations, where appropriate) that will go into each flask. What range of conditions will be tested; i.e., range of pHs, temperature, sugar concentration, etc.? Explain why this range was selected. Identify the controls(s) that will be included. State how many replicates will be performed. Consult with your instructor if necessary when answering these questions. Do not include the procedure that is provided in the lab manual, include only those procedures that your group designs.
5. How do you expect the results to appear if your hypothesis is correct? (Draw a hypothetical graph summarizing the expected relationship between your variable and rate of fermentation.)
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