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Search Results (1,156)

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15 pages, 7763 KiB  
Article
From Spectacle to Scene: A Pragmatist Approach to Performing Live
by Barbara Formis
Philosophies 2025, 10(1), 25; https://doi.org/10.3390/philosophies10010025 - 13 Feb 2025
Viewed by 370
Abstract
Drawing from the philosophies of pragmatism and somaesthetics, as developed by Richard Shusterman, this inquiry argues that performance holds a unique ontological status, one that emphasizes participation, shared meaning making, and the aesthetic qualities of ordinary, lived experience. As a philosopher trained as [...] Read more.
Drawing from the philosophies of pragmatism and somaesthetics, as developed by Richard Shusterman, this inquiry argues that performance holds a unique ontological status, one that emphasizes participation, shared meaning making, and the aesthetic qualities of ordinary, lived experience. As a philosopher trained as a dancer, I share some insights from my own experience as a performer offering a first-person aesthetic experience as a tool for conceptual inquiry. This experience allows the inquiry to explore the distinction between “scene” and “spectacle”, positioning the scene as a space of co-creation, in contrast to the distant, objectifying gaze encouraged by spectacle. By examining participatory projects and firsthand artistic experiences, I try to illustrate how performance can dissolve the boundaries between art and life, proposing a model of art that is shared, embodied, deeply connected to the rhythms of the everyday and gives foundation to a political transformation. Full article
(This article belongs to the Special Issue The Aesthetics of the Performing Arts in the Contemporary Landscape)
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<p>Furlan Massimo and De Ribaupierre Claire, <span class="html-italic">Les Héros de la pensée</span>, Théâtre de la Cité Internationale, Paris, 2012.</p>
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<p>Bastien Gallet et Barbara Formis, dans Furlan Massimo and De Ribaupierre Claire, <span class="html-italic">Les Héros de la pensée</span>, Théâtre de la Cité Internationale, Paris, 2012.</p>
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<p><span class="html-small-caps">Madau</span> Maria Cristina, <span class="html-italic">The Last Supper</span> © Pino Montisci.</p>
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<p><span class="html-small-caps">Madau</span> Maria Cristina, <span class="html-italic">Manger comme renaissance</span>, 2015, video-portrait of Barbara Formis, text by Barbara Formis, © Pino Montisci.</p>
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<p>Aerial view of one working meeting at Domus, 2021.</p>
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<p>Still image of the performance/video <span class="html-italic">The Last Supper</span> (La Cène)<span class="html-italic">,</span> with the participation of all guests of the residence around a table in the middle of a field of dried olive trees infected with bacteria.</p>
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21 pages, 3456 KiB  
Article
A Semi-Automatic Ontology Development Framework for Knowledge Transformation of Construction Safety Requirements
by Zhijiang Wu, Mengyao Liu and Guofeng Ma
Buildings 2025, 15(4), 569; https://doi.org/10.3390/buildings15040569 - 13 Feb 2025
Viewed by 298
Abstract
Construction safety requirements (SRs), which serve as critical information encapsulating a wide range of safety-related issues, constitute a fundamental basis for effective construction safety management. The constraints of the complex information characteristics and uncertainty of knowledge migration, however, lead to the failure to [...] Read more.
Construction safety requirements (SRs), which serve as critical information encapsulating a wide range of safety-related issues, constitute a fundamental basis for effective construction safety management. The constraints of the complex information characteristics and uncertainty of knowledge migration, however, lead to the failure to transform most of the requirement information into effective knowledge. This study proposes a multi-stage knowledge transformation framework for realizing the transformation of SRs from abstract information to canonical knowledge, and it accurately completes the knowledge transformation through document matching, knowledge extraction, and knowledge representation. Meanwhile, a semi-automated model was introduced into this study to develop a domain ontology knowledge base for SRs and to represent each type of knowledge through class definitions. The proposed framework was validated by testing project documents collected from two types of building projects, and the results show that the RD-based association rules can accurately match documents associated with SRs and adapt to match different types of sentiment attribute documents. Moreover, the improved TF-IDF algorithm improved by 20% in precision and recall, showing that the algorithm can extract tacit knowledge by combining knowledge points. Further, the domain ontology knowledge base facilitates normative documentation and representation for each type of knowledge in SRs. Full article
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<p>A knowledge transformation framework for SRs.</p>
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<p>Attribute definition and creation process of ontology.</p>
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<p>Associated results between object elements and accident case documents (top 3).</p>
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<p>Matching of object elements to single- and dual-emotion documents in two buildings.</p>
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<p>The effect of different algorithms for the extraction of object elements.</p>
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<p>Extracted tacit knowledge corresponding to SRs.</p>
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<p>Maximum weighted response measures corresponding to each risk factor.</p>
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<p>Instances of ontological knowledge for SRs.</p>
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25 pages, 13626 KiB  
Article
Fine-Tuning LLM-Assisted Chinese Disaster Geospatial Intelligence Extraction and Case Studies
by Yaoyao Han, Jiping Liu, An Luo, Yong Wang and Shuai Bao
ISPRS Int. J. Geo-Inf. 2025, 14(2), 79; https://doi.org/10.3390/ijgi14020079 - 11 Feb 2025
Viewed by 401
Abstract
The extraction of disaster geospatial intelligence (DGI) from social media data with spatiotemporal attributes plays a crucial role in real-time disaster monitoring and emergency decision-making. However, conventional machine learning approaches struggle with semantic complexity and limited Chinese disaster corpus. Recent advancements in large [...] Read more.
The extraction of disaster geospatial intelligence (DGI) from social media data with spatiotemporal attributes plays a crucial role in real-time disaster monitoring and emergency decision-making. However, conventional machine learning approaches struggle with semantic complexity and limited Chinese disaster corpus. Recent advancements in large language models (LLMs) offer new opportunities to overcome these challenges due to their enhanced semantic comprehension and multi-task learning capabilities. This study investigates the potential application of LLMs in disaster intelligence extraction and proposes an efficient, scalable method for multi-hazard DGI extraction. Building upon a unified ontological framework encompassing core natural disaster elements, this method employs parameter-efficient low-rank adaptation (LoRA) fine-tuning to optimize open-source Chinese LLMs using a meticulously curated instruction-tuning dataset. It achieves simultaneous identification of multi-hazard intelligence cues and extraction of disaster spatial entity attributes from unstructured Chinese social media texts through unified semantic parsing and structured knowledge mapping. Compared to pre-trained models such as BERT and ERNIE, the proposed method was shown to achieve state-of-the-art evaluation results, with the highest recognition accuracy (F1-score: 0.9714) and the best performance in structured information generation (BLEU-4 score: 92.9649). Furthermore, we developed and released DGI-Corpus, a Chinese instruction-tuning dataset covering various disaster types, to support the research and application of LLMs in this field. Lastly, the proposed method was applied to analyze the spatiotemporal evolution patterns of the Zhengzhou “7.20” flood disaster. This study enhances the efficiency of natural disaster monitoring and emergency management, offering technical support for disaster response and mitigation decision-making. Full article
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<p>Overall methodological flowchart.</p>
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<p>Disaster information ontology model.</p>
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<p>Intelligence clue instruction data example. The blue boxes denote the corresponding English translations of the Chinese texts.</p>
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<p>Implementation process of LoRA fine-tuning.</p>
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<p>Case analysis area.</p>
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<p>Temporal variations of rainfall, tweet volume, and DGI volume. In subfigures (<b>A</b>–<b>F</b>), rainfall is represented by blue bar charts, while the orange curve illustrates fluctuations in tweet volume. Other colored curves in the subplots depict cumulative changes in DGI volume under 24-h interval conditions.</p>
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<p>Spatiotemporal evolution patterns of DGI hotspots at 12-h intervals.</p>
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<p>Spatial overlay analysis of intelligence hotspots, waterlogging points, and collapse points.</p>
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<p>The spatiotemporal distribution of the public’s emergency demands from 20 July to 22 July 2021.</p>
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37 pages, 44373 KiB  
Article
Quantitative Proteomics and Molecular Mechanisms of Non-Hodgkin Lymphoma Mice Treated with Incomptine A, Part II
by Normand García-Hernández, Fernando Calzada, Elihú Bautista, José Manuel Sánchez-López, Miguel Valdes, Marta Elena Hernández-Caballero and Rosa María Ordoñez-Razo
Pharmaceuticals 2025, 18(2), 242; https://doi.org/10.3390/ph18020242 - 11 Feb 2025
Viewed by 386
Abstract
Background/Objectives: Incomptine A (IA) has cytotoxic activity in non-Hodgkin lymphoma (NHL) cancer cell lines. Its effects on U-937 cells include induction of apoptosis, production of reactive oxygen species, and inhibition of glycolytic enzymes. We examined the altered protein levels present in the lymph [...] Read more.
Background/Objectives: Incomptine A (IA) has cytotoxic activity in non-Hodgkin lymphoma (NHL) cancer cell lines. Its effects on U-937 cells include induction of apoptosis, production of reactive oxygen species, and inhibition of glycolytic enzymes. We examined the altered protein levels present in the lymph nodes of an in vivo mouse model. Methods: We induced an in vivo model with Balb/c mice with U-937 cells and treated it with IA or methotrexate, as well as healthy mice. We determined expressed proteins by TMT based on the LC-MS/MS method (Data are available via ProteomeXchange with identifier PXD060392) and a molecular docking study targeting 15 deregulated proteins. We developed analyses through the KEGG, Reactome, and Gene Ontology databases. Results: A total of 2717 proteins from the axillary and inguinal lymph nodes were analyzed and compared with healthy mice. Of 412 differentially expressed proteins, 132 were overexpressed (FC ≥ 1.5) and 117 were underexpressed (FC ≤ 0.67). This altered expression was associated with 20 significantly enriched processes, including chromatin remodeling, transcription, translation, metabolic and energetic processes, oxidative phosphorylation, glycolysis/gluconeogenesis, cell proliferation, cytoskeletal organization, and with cell death with necroptosis. Conclusions: We confirmed the previously observed dose-dependent effect of IA as a secondary metabolite with important potential as an anticancer agent for the treatment of NHL, showing that the type of drug or the anatomical location influences the response to treatment. The IA promises to be a likely safer and more effective treatment to improve outcomes, reduce toxicities, and improve survival in patients with NHL, initially targeting histones and transcription factors that will affect cell death proteins. Full article
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<p>Structure of incomptine A (IA) and methotrexate (MTX).</p>
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<p>Network visualization from the 2717 proteins in a computational representation through Gene Ontology with enrichment analysis of molecular function subontology. It shows identified categories, and node size in range 40–160 interactions.</p>
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<p>Enrich profiler plot. The number of the 2717 proteins related to each enrichment analysis for each source, Gene Ontology (Biological Process, Cellular Component and Molecular Function), Reactome, and KEGG databases. The <span class="html-italic">x</span>-axis shows the number of different enriched processes according to each database, and the <span class="html-italic">y</span>-axis plots the significance value obtained in ascending order (−log10 adj-<span class="html-italic">p</span>-value). A dashed cutoff at the top of the graph divides the most significant enriched cellular processes, and a black circle with the number of different processes of interest are highlighted according to each database. The list of the representative processes marked is arranged by significance value, labeled by ID (number in the general list of the process), resource (database with which the process was enriched), term ID (identification of the process according to each platform), term name (name of the enriched process according to each database), and adj-<span class="html-italic">p</span>-value (significance value of the process), shown with number and color scale and arranged in a descending order.</p>
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<p>Network comparison via enrichment analysis through Gene Ontology Molecular Function source, from up-regulated and down-regulated proteins from C− versus 5LANM (<b>A</b>), 5RINM (<b>B</b>), 10LANM (<b>C</b>), 10RINM (<b>D</b>), and MTX (<b>E</b>). Shows term name, molecular function, fold change bar, and node size interactions scale.</p>
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<p>Protein relationship in common between 5LANM, 10LANM, and MTX versus negative control. Venn diagram (<b>A</b>) illustrating overlapping circles blue (5LANM), yellow (10LANM), and green (MTX); and network comparison (<b>B</b>) indicating up regulation (red dots) or down regulation (blue dots) of proteins in common or unique processes.</p>
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<p>Network comparison via enrichment analysis through Gene Ontology, biological process shared, or specific of dysregulated proteins from C− versus 5LANM, 5RINM, 10LANM, 10RINM, and MTX. Shows cluster color comparison, term name, biological process, and circle scale based on the number of genes.</p>
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<p>Affinity maps of molecular docking on proteins, 2D representation of interactions between incomptine A (<b>1</b>) and methotrexate (<b>2</b>) in (<b>A</b>) histone H2A type 1-F, (<b>B</b>) fragile X mental retardation syndrome-related protein 2, (<b>C</b>) DNA-directed RNA polymerase II subunit E, (<b>D</b>) 40S ribosomal protein S2, (<b>E</b>) signal transducer and activator of transcription 1, (<b>F</b>) transforming growth factor beta-1 proprotein, (<b>G</b>) TSC22 domain family protein 4, (<b>H</b>) apoptosis inhibitor 5, (<b>I</b>) cold-inducible RNA-binding protein, (<b>J</b>) zinc-alpha-2-glycoprotein, (<b>K</b>) alpha-1-acid glycoprotein 1, (<b>L</b>) nuclear pore glycoprotein p62, (<b>M</b>) beta-enolase, (<b>N</b>) caspase-3, and (<b>O</b>) caspase-7.</p>
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<p>Affinity maps of molecular docking on proteins, 2D representation of interactions between incomptine A (<b>1</b>) and methotrexate (<b>2</b>) in (<b>A</b>) histone H2A type 1-F, (<b>B</b>) fragile X mental retardation syndrome-related protein 2, (<b>C</b>) DNA-directed RNA polymerase II subunit E, (<b>D</b>) 40S ribosomal protein S2, (<b>E</b>) signal transducer and activator of transcription 1, (<b>F</b>) transforming growth factor beta-1 proprotein, (<b>G</b>) TSC22 domain family protein 4, (<b>H</b>) apoptosis inhibitor 5, (<b>I</b>) cold-inducible RNA-binding protein, (<b>J</b>) zinc-alpha-2-glycoprotein, (<b>K</b>) alpha-1-acid glycoprotein 1, (<b>L</b>) nuclear pore glycoprotein p62, (<b>M</b>) beta-enolase, (<b>N</b>) caspase-3, and (<b>O</b>) caspase-7.</p>
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<p>Affinity maps of molecular docking on proteins, 2D representation of interactions between incomptine A (<b>1</b>) and methotrexate (<b>2</b>) in (<b>A</b>) histone H2A type 1-F, (<b>B</b>) fragile X mental retardation syndrome-related protein 2, (<b>C</b>) DNA-directed RNA polymerase II subunit E, (<b>D</b>) 40S ribosomal protein S2, (<b>E</b>) signal transducer and activator of transcription 1, (<b>F</b>) transforming growth factor beta-1 proprotein, (<b>G</b>) TSC22 domain family protein 4, (<b>H</b>) apoptosis inhibitor 5, (<b>I</b>) cold-inducible RNA-binding protein, (<b>J</b>) zinc-alpha-2-glycoprotein, (<b>K</b>) alpha-1-acid glycoprotein 1, (<b>L</b>) nuclear pore glycoprotein p62, (<b>M</b>) beta-enolase, (<b>N</b>) caspase-3, and (<b>O</b>) caspase-7.</p>
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<p>Affinity maps of molecular docking on proteins, 2D representation of interactions between incomptine A (<b>1</b>) and methotrexate (<b>2</b>) in (<b>A</b>) histone H2A type 1-F, (<b>B</b>) fragile X mental retardation syndrome-related protein 2, (<b>C</b>) DNA-directed RNA polymerase II subunit E, (<b>D</b>) 40S ribosomal protein S2, (<b>E</b>) signal transducer and activator of transcription 1, (<b>F</b>) transforming growth factor beta-1 proprotein, (<b>G</b>) TSC22 domain family protein 4, (<b>H</b>) apoptosis inhibitor 5, (<b>I</b>) cold-inducible RNA-binding protein, (<b>J</b>) zinc-alpha-2-glycoprotein, (<b>K</b>) alpha-1-acid glycoprotein 1, (<b>L</b>) nuclear pore glycoprotein p62, (<b>M</b>) beta-enolase, (<b>N</b>) caspase-3, and (<b>O</b>) caspase-7.</p>
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<p>Affinity maps of molecular docking on proteins, 2D representation of interactions between incomptine A (<b>1</b>) and methotrexate (<b>2</b>) in (<b>A</b>) histone H2A type 1-F, (<b>B</b>) fragile X mental retardation syndrome-related protein 2, (<b>C</b>) DNA-directed RNA polymerase II subunit E, (<b>D</b>) 40S ribosomal protein S2, (<b>E</b>) signal transducer and activator of transcription 1, (<b>F</b>) transforming growth factor beta-1 proprotein, (<b>G</b>) TSC22 domain family protein 4, (<b>H</b>) apoptosis inhibitor 5, (<b>I</b>) cold-inducible RNA-binding protein, (<b>J</b>) zinc-alpha-2-glycoprotein, (<b>K</b>) alpha-1-acid glycoprotein 1, (<b>L</b>) nuclear pore glycoprotein p62, (<b>M</b>) beta-enolase, (<b>N</b>) caspase-3, and (<b>O</b>) caspase-7.</p>
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21 pages, 5444 KiB  
Article
Transcriptomic Analysis Divulges Differential Expressions of Microglial Genes After Microglial Repopulation in Mice
by Muhammad Tariq Hafeez, Hao Gao, Furong Ju, Fujian Qi, Ting Li and Shengxiang Zhang
Int. J. Mol. Sci. 2025, 26(4), 1494; https://doi.org/10.3390/ijms26041494 - 11 Feb 2025
Viewed by 243
Abstract
Microglia are key immune cells in the central nervous system (CNS) and maintain hemostasis in physiological conditions. Microglial depletion leads to rapid repopulation, but the gene expression and signaling pathways related to repopulation remain unclear. Here, we used RNA sequencing (RNA-Seq) analysis to [...] Read more.
Microglia are key immune cells in the central nervous system (CNS) and maintain hemostasis in physiological conditions. Microglial depletion leads to rapid repopulation, but the gene expression and signaling pathways related to repopulation remain unclear. Here, we used RNA sequencing (RNA-Seq) analysis to profile the transcriptome of microglia-depleted tissue by taking advantage of a conditional genetic microglial depletion model (CX3CR1CreER/+ system). Differential gene expression (DGE) sequencing analysis showed that 1226 genes were differentially up- and downregulated in both groups compared to control. Our data demonstrated that many microglial genes were highly regulated on day 3 after depletion but the numbers of differentially expressed genes were reduced by day 7. Gene ontology (GO) analysis categorized these differentially expressed genes on day 3 and day 7 to the specific biological processes, such as cell proliferation, cell activation, and cytokine and chemokine production. DGE analysis indicated that specific genes related to proliferation were regulated after depletion. Consistent with the changes in transcriptome, the histological analysis of transgenic mice revealed that the microglia after depletion undergo proliferation and activation from day 3 to day 7. Collectively, these results suggest that transcriptomic changes in microglial genes during depletion have a profound implication for the renewal and activation of microglia and may help to understand the regulatory mechanism of microglial activation in disease conditions. Full article
(This article belongs to the Special Issue Unique Properties of Glial Cells in the CNS)
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<p>The density of cortical microglia at different time points after depletion (<span class="html-italic">n</span> = 3/group). (<b>A</b>) The diagram for the establishment of the experimental period of the concerned animals. (<b>B</b>) The density of the microglia in the brain’s cortex after the treatment of drugs (Tamoxifen and DT) at different time points (control, day 3, and day 7). The images in the lower panel are the magnified views of the white box regions in the upper panel. (<b>C</b>) Following microglial depletion, data showing the densities of microglia in control, day 3, and day 7 groups, and a highly significant difference in the cortex area of the brain are observed at these time points compared to the control group. Data show mean ± S.E.M.; **** <span class="html-italic">p</span> &lt; 0.0001, <span class="html-italic">n</span> = 3/group.</p>
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<p>Effect of DT on the microglia of CX3CR1<sup>CreER/+</sup>:R26<sup>iDTR/+</sup> mice. (<b>A</b>) Morphological changes of microglia in control, day 3, and day 7 groups. (<b>B</b>–<b>D</b>) Quantification of microglial morphological alterations in CX3CR1<sup>CreER/+</sup>:R26<sup>iDTR/+</sup> mice following DT exposure. Data are shown as mean ± S.E.M.; ** <span class="html-italic">p</span> &lt; 0.01, **** <span class="html-italic">p</span> &lt; 0.0001, <span class="html-italic">n</span> = 3/group.</p>
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<p>Proliferation of cortical microglia at day 7 after depletion (<span class="html-italic">n</span> = 3). (<b>A</b>) Confocal images showing microglia (green) and BrdU-labeled proliferating cells (red) in the cortical region of the mouse brain from the day 7 group. (<b>B</b>) Group data showing the densities of proliferative microglia in control group and proliferative microglia in day 7 groups after depletion, and significant BrdU-positive proliferative cells observed in day 7 group. Data are shown as mean ± S.E.M.; BrdU-positive proliferative cells in the control group vs. BrdU-positive proliferative cells in day 7, group ** <span class="html-italic">p</span> &lt; 0.0017, <span class="html-italic">n</span> = 3/group.</p>
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<p>The differentially expressed genes (DEGs) after depletion of microglia. (<b>A</b>) The heat map indicates the level of DEGs (control, day 3, and day 7) after the depletion of microglia in mice (CX3CR1<sup>CreER/+</sup>:R26<sup>iDTR/+</sup>) brain by RNA-Seq. (<b>B</b>) The Venn diagram indicates the differential genes’ uniqueness to each other in comparison (<span class="html-italic">p</span> &lt; 0.05) of different combinations (control, day 3, and day 7). (<b>C</b>) Principal Component Analysis (PCA) illustrating the gene expression patterns in experimental and control groups. (<b>D</b>,<b>E</b>) Volcano plot depicting the differential gene expression, with upregulated genes highlighted in red and downregulated genes in blue. The plot illustrates the number of genes that are significantly up- and downregulated.</p>
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<p>Go terms under the molecular function, cellular component, and biological processes. (<b>A</b>,<b>B</b>) Up- and downregulated Gene Ontology (GO) term enrichment of DEGs in day 3 vs. control group after microglial depletion. (<b>C</b>,<b>D</b>) Up- and downregulated Gene Ontology (GO) term enrichment of DEGs in day 7 vs. control group after microglial depletion. (<b>E</b>) Gene Set Enrichment Analysis (GSEA) shows the upregulated DEGs in day 3 vs. control and day 7 vs. control groups.</p>
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<p>KEGG enrichment and Protein–Protein Interaction (PPI) of DEGs between day 3 and day 7 groups. (<b>A</b>,<b>B</b>) The highly up- and downregulated KEGG pathways in day 7 vs. day 3 groups. (<b>C</b>) PPI network prediction of DEGs (day 7 vs. day 3 groups) shows the key regulatory genes. Dot colors indicate the up- and downregulation of genes, while font sizes indicate the importance of the genes in the network.</p>
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<p>Differential regulation of microglial genes after the depletion. (<b>A</b>,<b>B</b>) The qRT-PCR fold change for four “up- and downregulated” genes was matched with log<sub>2</sub> fold change DGE data on the day 3 group in response to the process of proliferation after the depletion of microglia. (<b>C</b>,<b>D</b>) The qRT-PCR fold change for four “up- and downregulated” genes was matched with log<sub>2</sub> fold change DGE data on the day 7 group in response to the process of proliferation after the depletion of microglia. Here, the black columns show control, while the grey columns show day 3 and day 7 groups.</p>
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<p>The differentially expressed microglial proliferation-related genes, microglial activation-related genes, and microglial-related chemokines after depletion. (<b>A1</b>–<b>A3</b>) The top “up- and downregulated” genes in response to the proliferation of DEG_KEGG Pathways in the day 3 group vs. control group, day 7 group vs. control group and day 3 group vs. day 7 group. (<b>B1</b>–<b>B3</b>) The top “up- and downregulated” genes in response to the activation of DEG_KEGG Pathways in the day 3 group vs. control group, day 7 group vs. control group and day 3 group vs. day 7 group. (<b>C1</b>–<b>C3</b>) The top “up- and downregulated” genes in response to the chemokines of DEG_KEGG Pathways in day 3 group vs. control group, day 7 group vs. control group and day 3 group vs. Day 7 group.</p>
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12 pages, 895 KiB  
Article
Changes in Protein Expression in Warmed Human Lens Epithelium Cells Using Shotgun Proteomics
by Hiroko Otake, Tetsushi Yamamoto, Naoki Yamamoto, Yosuke Nakazawa, Yoshiki Miyata, Atsushi Taga, Hiroshi Sasaki and Noriaki Nagai
Medicina 2025, 61(2), 286; https://doi.org/10.3390/medicina61020286 - 7 Feb 2025
Viewed by 338
Abstract
Background and Objectives: In previous studies, we reported that the assessment of the cumulative thermal dose in the crystalline lens, conducted through computational modeling utilizing a supercomputer and the biothermal transport equation, exhibited a significant association with the incidence of nuclear cataracts. [...] Read more.
Background and Objectives: In previous studies, we reported that the assessment of the cumulative thermal dose in the crystalline lens, conducted through computational modeling utilizing a supercomputer and the biothermal transport equation, exhibited a significant association with the incidence of nuclear cataracts. In this study, we have investigated the types of proteins that expressed underlying 35.0 °C (normal-temp) and 37.5 °C (warming-temp) by using the shotgun liquid chromatography (LC) with tandem mass spectrometry (MS/MS)-based global proteomic approach. Materials and Methods: We have discussed the changes in protein expression in warmed iHLEC-NY2 cells using Gene Ontology analysis and a label-free semiquantitative method based on spectral counting. Results: In iHLEC-NY2, 615 proteins were detected, including 307 (49.9%) present in both lenses cultured at normal-temp and warming-temp, 130 (21.1%) unique to the lens cultured at normal-temp, and 178 (29.0%) unique to the lens cultured at warming-temp. Furthermore, LC–MS/MS analysis showed that warming decreased the expression of actin, alpha cardiac muscle 1, actin-related protein 2, putative tubulin-like protein alpha-4B, ubiquitin carboxyl-terminal hydrolase 17-like protein 1, ubiquitin-ribosomal protein eL40 fusion protein, ribosome biogenesis protein BMS1 homolog, histone H2B type 1-M, and histone H2A.J. in iHLEC-NY2. Conclusions: The decreases in the specific protein levels of actin, tubulin, ubiquitin, ribosomes, and histones may be related to cataract development under warming conditions. This investigation could provide a critical framework for understanding the correlation between temperature dynamics and the development of nuclear cataracts. Full article
(This article belongs to the Special Issue Ophthalmology: New Diagnostic and Treatment Approaches)
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<p>Identification and semiquantitative comparison of the differentially expressed proteins in iHLEC-NY2 cells cultured at normal-temp and warming-temp. (<b>A</b>) Venn diagram depicting proteins identified in iHLEC-NY2 cells grown at normal-temp and warming-temp. (<b>B</b>) Semiquantitative analysis of proteins differentially expressed in iHLEC-NY2 cells cultured at warming-temp. To compare the expression levels of identified proteins between cells cultured at normal-temp and warming-temp, Rsc and NSAF values were calculated. The blue peak represents Rsc, while the green and red peaks correspond to the NSAF values at normal-temp (lower peak) and warming-temp (upper peak), respectively. Rsc is plotted such that its expression increases from left to right under warming-temp, providing a visual representation of the detected protein behavior. When focusing on GAPDH as a housekeeping protein, it is detected at the approximate center of the x-axis, with NSAF values at normal- (lower peak) and warming-temp (upper peak) showing similar intensities. This consistency suggests that the semiquantitative analysis of proteins was conducted appropriately.</p>
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27 pages, 604 KiB  
Article
Open and Extensible Benchmark for Explainable Artificial Intelligence Methods
by Ilia Moiseev, Ksenia Balabaeva and Sergey Kovalchuk
Algorithms 2025, 18(2), 85; https://doi.org/10.3390/a18020085 - 5 Feb 2025
Viewed by 282
Abstract
The interpretability requirement is one of the largest obstacles when deploying machine learning models in various practical fields. Methods of eXplainable Artificial Intelligence (XAI) address those issues. However, the growing number of different solutions in this field creates a demand to assess the [...] Read more.
The interpretability requirement is one of the largest obstacles when deploying machine learning models in various practical fields. Methods of eXplainable Artificial Intelligence (XAI) address those issues. However, the growing number of different solutions in this field creates a demand to assess the quality of explanations and compare them. In recent years, several attempts have been made to consolidate scattered XAI quality assessment methods into a single benchmark. Those attempts usually suffered from a focus on feature importance only, a lack of customization, and the absence of an evaluation framework. In this work, the eXplainable Artificial Intelligence Benchmark (XAIB) is proposed. Compared to existing benchmarks, XAIB is more universal, extensible, and has a complete evaluation ontology in the form of the Co-12 Framework. Due to its special modular design, it is easy to add new datasets, models, explainers, and quality metrics. Furthermore, an additional abstraction layer built with an inversion of control principle makes them easier to use. The benchmark will contribute to artificial intelligence research by providing a platform for evaluation experiments and, at the same time, will contribute to engineering by providing a way to compare explainers using custom datasets and machine learning models, which brings evaluation closer to practice. Full article
(This article belongs to the Section Evolutionary Algorithms and Machine Learning)
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<p>Three stages of the general XAIB workflow—Setup, Experiment, and Visualization. Each Setup is a unit of evaluation. It contains all the parameters and entities needed to obtain the values. The execution pipeline takes setups and executes them, writing down the values. The values can then be manually analyzed or put into the visualization stage.</p>
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<p>Use case diagram with groups of users. Arrows represent interactions with different components of the XAIB. Each group has different goals; therefore, their interactions are different. Developers contribute new functionalities and entities. Researchers and Engineers interact in a similar way but have different goals. Researchers propose their own method; for them, setup is a variable. When Engineers select a method for their own task, for them, the method is a variable.</p>
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<p>Results on the first setup—SVM—on the breast cancer dataset. Metric values are normalized for visualization. Each line represents a single explanation method. In this setup, <b>shap outperforms LIME</b> on the majority of metrics.</p>
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<p>Results on the second setup —NN—on synthetic noisy dataset. Metric values are normalized for visualization. Each line represents a single explanation method. In this setup, <b>LIME outperforms shap</b> on the majority of metrics.</p>
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15 pages, 6556 KiB  
Article
Adaptive Resistance of Staphylococcus aureus to Cefquinome Sulfate in an In Vitro Pharmacokinetic Model with Transcriptomic Insights
by Yue Hu, Hao Zhu, Xingbo Zhang, Yuhui Wu, Jingtao Li, Nan Li, Zhanbo Cai and Yuhui Yang
Microorganisms 2025, 13(2), 329; https://doi.org/10.3390/microorganisms13020329 - 2 Feb 2025
Viewed by 597
Abstract
Cefquinome sulfate has a strong killing effect against Staphylococcus aureus (S. aureus), but bacterial resistance has become increasingly widespread. Experiments were conducted to investigate the pattern of adaptive resistance of S. aureus to cefquinome sulfate under different dosage regimens by using [...] Read more.
Cefquinome sulfate has a strong killing effect against Staphylococcus aureus (S. aureus), but bacterial resistance has become increasingly widespread. Experiments were conducted to investigate the pattern of adaptive resistance of S. aureus to cefquinome sulfate under different dosage regimens by using pharmacokinetic-pharmacodynamics (PK-PD) modeling, and the adaptive-resistant bacteria in different states were screened and subjected to transcriptomic sequencing. The results showed that the minimum inhibitory concentration of Staphylococcus aureus under the action of cefquinome sulfate was 0.5 μg/mL, the anti-mutation concentration was 1.6 μg/mL, and the mutation selection window range was 0.5~1.6 μg/mL. In the in vitro pharmacokinetic model to simulate different dosing regimens in the animal body, there are certain rules for the emergence of adaptive drug-resistant bacteria: the intensity of bacterial resistance gradually increased with culture time, and the order of emergence was tolerant bacteria (TO) followed by persistent bacteria (PE) and finally resistant bacteria (RE). The sequence reflected the evolution of adaptive drug resistance. Transcriptome Gene Ontology (GO) analysis revealed that differentially expressed genes were involved in cellular respiration, energy derivation by oxidation of organic compounds, and oxidation–reduction processes. The differentially expressed genes identified functioned in the synthesis of cell membranes, cytoplasm, and intracellular parts. A Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis found that 65 genes were differentially expressed after cefquinome sulfate treatment, of which 35 genes were significantly upregulated and 30 genes were significantly downregulated. Five genes, sdhB, sdhA, pdhA, lpdA, and sucC, may be involved in network regulation. This study revealed the cross-regulation of multiple metabolic pathway networks and the targets of network regulation of S. aureus to produce adaptive drug resistance. The results will provide guidance for clinical drug use in animals infected with S. aureus. Full article
(This article belongs to the Section Antimicrobial Agents and Resistance)
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<p>Linear analysis of flow rate. x represents the frequency (r/min), and y represents the flow rate (mL/min).</p>
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<p>Screening drug-resistant bacteria in different states. MIC comparison results between resistant bacteria and standard strains at different doses at different times. (<b>A</b>) Under the condition of the 2 μg/mL/12 h dose model, the drug resistance intensity of resistant bacteria at 66 h and 72 h were 2MIC and 4MIC, respectively; (<b>B</b>) under the condition of the 3 μg/mL/12 h dose model, the resistance intensity of drug-resistant bacteria at 60 h and 66 h were 2MIC and 2MIC, respectively; (<b>C</b>) the 5 μg/mL/12 h dose model condition.</p>
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<p>Screening of tolerant adaptive resistant bacteria and persistent adaptive resistant bacteria. Comparison of MDK99 and MDK99.99 of resistant bacteria with standard strains at different doses at different times. (<b>A</b>) Comparison of 2 μg/mL/12 h dose model bacteria MDK99; (<b>B</b>) comparison of model bacteria MDK99.99 at 2 μg/mL/12 h dose. (<b>C</b>) Comparison of 3 μg/mL/12 h dose model bacteria MDK99; (<b>D</b>) comparison of model bacteria MDK99.99 at 3 μg/mL/12 h dose; (<b>E</b>) comparison of 5 μg/mL/12 h dose model bacteria MDK99; (<b>F</b>) comparison of model bacteria MDK99.99 at 5 μg/mL/12 h dose.</p>
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<p>Volcano plot among four groups of strains. Horizontal coordinate log2(fold change): logarithm of differential folds with a base of 2; vertical coordinate -log10(<span class="html-italic">p</span>-value): negative logarithm of <span class="html-italic">p</span> value with a base of 10; gray dots represent genes that were not differentially expressed, blue dots represent genes that were differentially downregulated, and red dots represent genes that were differentially upregulated. (<b>A</b>) PEvsOR group differential gene volcano map. (<b>B</b>) REvsOR group differential gene volcano map. (<b>C</b>) REvsPE group differential gene volcano map. (<b>D</b>) TOvsOR group differential gene volcano map. (<b>E</b>) TOvsPE group differential gene volcano map. (<b>F</b>) TOvsRE group differential gene volcano map.</p>
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<p>Overall hierarchical clustering of all differentially expressed genes in all comparison groups. Red indicates highly expressed genes, and blue indicates low-expressed genes. The <span class="html-italic">x</span> axis shows the different samples, and the <span class="html-italic">y</span> axis shows the gene names.</p>
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<p>Enrichment map of GO functional annotation of differential genes of the four groups of strains. The horizontal coordinate is the significance of the enrichment (expressed as -log10 (<span class="html-italic">p</span> value); the larger the value, the more significant the enrichment), and the vertical coordinate is the pathway name. (<b>A</b>) GO-enriched bubble map of downregulated genes in the PEvsOR group. (<b>B</b>) GO-enriched bubble map of upregulated genes in the PEvsOR group. (<b>C</b>) GO-enriched bubble map of downregulated genes in the REvsOR group. (<b>D</b>) GO-enriched bubble map of upregulated genes in the REvsOR group. (<b>E</b>) GO-enriched bubble map of downregulated genes in the TOvsOR group. (<b>F</b>) GO-enriched bubble map of upregulated genes in the TOvsOR group. (<b>G</b>) GO-enriched bubble plot of downregulated genes in the TOvsPE group. (<b>H</b>) GO-enriched bubble plot of downregulated genes in the TOvsRE group.</p>
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<p>KEGG pathways significantly enriched for differential genes in three sets of strain samples versus the original standard strain. (<b>A</b>) TOvsOR differential genes were significantly enriched in the KEGG pathway. (<b>B</b>) PEvsOR differential genes were significantly enriched in the KEGG pathway. (<b>C</b>) REvsOR differential genes were significantly enriched in the KEGG pathway.</p>
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15 pages, 202 KiB  
Article
Do It Again: Repetition, Reproduction, Reenactment in Performance and Music
by Christian Grüny
Philosophies 2025, 10(1), 17; https://doi.org/10.3390/philosophies10010017 - 31 Jan 2025
Viewed by 830
Abstract
Any human action can be repeated; none can be repeated exactly. In fact, most human actions will be repeated—in its most basic sense, culture is the establishment of forms and standards of repeatability. The performing arts are based on this fact, they make [...] Read more.
Any human action can be repeated; none can be repeated exactly. In fact, most human actions will be repeated—in its most basic sense, culture is the establishment of forms and standards of repeatability. The performing arts are based on this fact, they make it explicit and explore it, albeit in very different ways. In light of these differences, it becomes obvious that ontological questions in music and the performing arts have a cultural index—rather than asking about the nature of identity and repetition, we should ask what counts as identical under what circumstances. These circumstances differ widely across cultures as well as across disciplines, and they are subject to change. Drawing on examples from performance art and music, this paper will explore the different constellations of repeatability we find in these fields. This comparative perspective promises to reshape some gridlocked debates in music as well as in the theory of performance. In particular, Christopher Bedford’s idea of a “viral ontology” of performance and the displacement of the concept of the work by Bruno Nettl’s notion of the model prove fruitful. Full article
(This article belongs to the Special Issue The Aesthetics of the Performing Arts in the Contemporary Landscape)
24 pages, 2227 KiB  
Article
Practice or Praxis? A Theoretical Classification System for STEAM Education
by Lucy Yeomans, Kerry Chappell, Lindsay Hetherington, Sabrina Bresciani, Elisabeth Unterfrauner, Claudia Magdalena Fabian and Pavlos Koulouris
Educ. Sci. 2025, 15(2), 164; https://doi.org/10.3390/educsci15020164 - 30 Jan 2025
Viewed by 605
Abstract
Research in STEAM education continues to develop, and yet the literature in this area is often theoretically ‘light’. Given the importance of theory to provide explanatory power, the aim of this paper is to offer a theoretical classification system to be used as [...] Read more.
Research in STEAM education continues to develop, and yet the literature in this area is often theoretically ‘light’. Given the importance of theory to provide explanatory power, the aim of this paper is to offer a theoretical classification system to be used as a tool for researchers and practitioners in this area. Derived from literature searches on STEAM education within open science/schooling, secondary/tertiary education intersection and global challenges, 26 frameworks were identified from 26 academic sources and refined based on their coherence and strong theoretical heritage. A relational ontology was proposed as a recurring theme and is a foundational aspect of the final classification system, signifying a shift from traditional models of STEAM that trivialise the ‘arts’ as utility disciplines. The 26 individual frameworks are organised into four approaches: ‘experiential real-world interactions’, ‘human psychological and cognitive’, ‘social, spatial, and material interconnectivity’, and ‘cultural and equity’. The overall classification system provides a starting point for researchers and educators navigating theoretically driven yet diverse STEAM implementation and understanding its impact depending on, and in response to, their preferred methodology. This system is novel in its treatment of theoretical perspectives, and its dynamic nature allows for the inclusion of further frameworks in the future. Full article
(This article belongs to the Special Issue Impact of Integrated STEAM Education)
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<p>Side visualisation, with rotations, of the meta-framework.</p>
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<p>Aerial visualisation of meta-framework.</p>
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23 pages, 7578 KiB  
Article
Transcriptomic Response of White Lupin Roots to Short-Term Sucrose Treatment
by Proyasha Roy, Shrey Sethi, James New, Kristina Mae Lorilla, Karen Maleski, Allan Ancheta and Claudia Uhde-Stone
Plants 2025, 14(3), 381; https://doi.org/10.3390/plants14030381 - 26 Jan 2025
Viewed by 633
Abstract
White lupin (Lupinus albus) has become a model plant for understanding plant adaptations to phosphorus (P) and iron (Fe) deficiency, two major limiting factors for plant productivity. In response to both nutrient deficiencies, white lupin forms cluster roots, bottle-brush-like root structures [...] Read more.
White lupin (Lupinus albus) has become a model plant for understanding plant adaptations to phosphorus (P) and iron (Fe) deficiency, two major limiting factors for plant productivity. In response to both nutrient deficiencies, white lupin forms cluster roots, bottle-brush-like root structures that aid in P and Fe acquisition from soil. While the cluster root function is well-studied, not much is known about the signaling pathways involved in sensing and responding to a P and Fe deficiency. Sucrose has been identified as a long-distance signal sent in increased concentrations from shoot to root in response to both a P and Fe deficiency. Thus, sucrose plays a dual role both as a signal and as a major source of energy for the root. To unravel the responses to sucrose as a signal, we performed an Illumina paired-end cDNA sequencing of white lupin roots treated with sucrose for 20, 40 or 80 min, compared to untreated controls (0 min). We identified 634 up-regulated and 956 down-regulated genes in response to sucrose. Twenty minutes of sucrose treatment showed the most responses, with the ethylene-activated signaling pathway as the most enriched Gene Ontology (GO) category. The number of up-regulated genes decreased at 40 min and 80 min, and protein dephosphorylation became the most enriched category. Taken together, our findings indicate active responses to sucrose as a signal at 20 min after a sucrose addition, but fewer responses and a potential resetting of signal transduction pathways by the dephosphorylation of proteins at 40 and 80 min. Full article
(This article belongs to the Special Issue Signaling Pathways and Crosstalk in Plant Stress Responses)
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<p>(<b>A</b>). MA (mean average) plot of log2 FC against normalized sequence counts at 20, 40, and 80 min (t20, t40, and t80) of sucrose treatment, each compared to t0 (no-sucrose control). Blue dots indicate values of padj (adjusted <span class="html-italic">p</span>-value) ≤ 0.01 in the DESeq2 gene expression analysis, while grey dots indicate padj values &gt; 0.01. (<b>B</b>) PCA plot of the 100 most up-regulated genes in three biological replications shows differences between sucrose-treated samples versus control, but also reveals some overlap between 20 and 40 min, and 40 and 80 min of sucrose treatment. (<b>C</b>) Venn diagram of genes that were significantly up-regulated (<b>upper panel</b>) or down-regulated (<b>lower panel</b>) after 20, 40, or 80 min of sucrose exposure.</p>
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<p>Heatmap of the 60 genes most up-regulated (log2FC ≥ 1.5, padj ≤ 0.05, <span class="html-italic">t</span>-test <span class="html-italic">p</span>-value ≤ 0.05) at t20 (20 min of sucrose treatment), compared to the untreated control (0 min). Shown are fragments per kilobase per million (FPKM). The raw data for this heatmap can be found in <a href="#app1-plants-14-00381" class="html-app">Table S1</a>.</p>
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<p>Hierarchical clustering of selected genes that were up-regulated in response to sucrose ONLY at t20, using publicly available gene expression data (<a href="https://www.whitelupin.fr/Transcriptomic.html" target="_blank">https://www.whitelupin.fr/Transcriptomic.html</a> accessed on 24 August 2024). The sections indicate root sections starting from the tip (S0) to visible cluster roots (S4–S7); the letters after the section numbers denote four biological replications. The colors of the heatmap indicate log2-transformed normalized reads. The raw data for this heatmap can be found in <a href="#app1-plants-14-00381" class="html-app">Table S2</a>.</p>
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<p>Heatmap of the 60 genes up-regulated (log2FC ≥ 1.5, padj &lt; 0.05) at all three timepoints (20, 40, and 80 min) of sucrose treatment, compared to the untreated control (0 min). Shown are log2FC (fold change). The raw data for this heatmap can be found in <a href="#app1-plants-14-00381" class="html-app">Table S3</a>.</p>
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<p>GO enriched categories of biological functions. GO enrichment of (<b>A</b>) genes up-regulated at 20 min of sucrose treatment, (<b>B</b>) genes ONLY up-regulated at 20 min, (<b>C</b>) genes down-regulated at t20, and (<b>D</b>) genes up-regulated at 40 AND 80 min of sucrose exposure.</p>
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<p>Pathway analysis using MapMan reveals many up-regulated pathways at 20 min of sucrose treatment, but mostly down-regulated pathways at 40 and even more so at 80 min of sucrose exposure. Input are log2FC values with padj ≤ 0.05. Red indicates up-regulated, and blue down-regulated genes.</p>
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<p>Working model summarizing our findings on short-term responses of roots to sucrose. Kinases, transcription factors, and plant hormone responses are up-regulated after 20 min of sucrose exposure, as well as in response to short-term P and Fe deficiency in Arabidopsis and soybean roots, as revealed in the literature [<a href="#B55-plants-14-00381" class="html-bibr">55</a>,<a href="#B56-plants-14-00381" class="html-bibr">56</a>,<a href="#B58-plants-14-00381" class="html-bibr">58</a>]. However, after 40 and 80 min of sucrose, protein dephosphorylation becomes an enriched category, indicating a possible resetting of signal transduction pathways. A dual role of sucrose also as metabolite is evident by the up-regulation of invertase, an enzyme cleaving sucrose into glucose and fructose, at all three timepoints of sucrose treatment.</p>
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19 pages, 10443 KiB  
Article
Intangible Capital: Digital Colors in Romanesque Cloisters
by Adriana Rossi, Sara Gonizzi Barsanti and Silvia Bertacchi
Heritage 2025, 8(2), 43; https://doi.org/10.3390/heritage8020043 - 24 Jan 2025
Viewed by 397
Abstract
This paper explores the possibility of counteracting the crisis of culture and institutions by investing in the identity values of the user-actor within digital spaces built for the purpose. The strategy is applied to the analysis of three Catalan cloisters (Spain), with a [...] Read more.
This paper explores the possibility of counteracting the crisis of culture and institutions by investing in the identity values of the user-actor within digital spaces built for the purpose. The strategy is applied to the analysis of three Catalan cloisters (Spain), with a focus on the representation of the cloister of Sant Cugat (Barcelona). Heuristic picklocks are found in the semantic richness proposed by Marius Schneider exclusively on the verbal level. The authors interpret the contents and transcribe them into graphic signs and digital denotations of sounds and colors. They organize proprietary ontologies, or syntagmatic lines, to be entrusted to the management of computer algorithms. The syncretic culture that characterized the medieval era allowed the ability to mediate science and faith to be entrusted to the mind of the praying monk alone in every canonical hour. The hypothesis that a careful direction has programmed the ways in which to orient souls to “navigate by sight” urges the authors to find the criteria that advanced statistics imitates to make automatic data processing “Intelligent”. In step with the times and in line with the most recent directions for the Safeguarding of Heritage, the musical, astral, and narrative rhythms feared by Schneider are used to inform representative models, to increase not only the visual perception of the user (XR Extended Reality) but also to solicit new analogies and illuminating associations. The results return a vision of the culture of the time suitable for shortening the distances between present and past, attracting the visitor and, with him, the resources necessary to protect and enhance the spaces of the Romanesque era. The methodology goes beyond the contingent aspect by encouraging the ‘remediation’ of contents with the help of machine learning. Full article
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<p>Location of the Catalan cloisters. From top: Sant Cugat, Girona, Ripoll, recalled by the VisualBasic interface [<a href="#B3-heritage-08-00043" class="html-bibr">3</a>] (pp. 353–362).</p>
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<p>Sant Cugat del Valles, interior of the abbey cloister: (<b>a</b>) western gallery—photo by the author; (<b>b</b>) elevation of the eastern gallery associated with the planimetric survey; superimposed is the ice plan derived from the interpretation of the indications contained in the Carmen de Laide vitae monasticae [<a href="#B3-heritage-08-00043" class="html-bibr">3</a>] (p. 139).</p>
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<p>(<b>a</b>,<b>b</b>) In the succession of columns, with positions numbered by M Schneider, a palimpsest of the information recalled by the same bas-relief.</p>
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<p>(<b>a</b>,<b>b</b>) In the succession of columns, with positions numbered by M Schneider, a palimpsest of the information recalled by the same bas-relief.</p>
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<p>(<b>a</b>) From Sanskrit syllables to words to decoding the central actions of zoomorphic motifs. (<b>b</b>) Symbolic representation of the thematic correspondences associated with the abstract zoomorphic motif.</p>
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<p>The video edited by the authors (QR1) is inspired by Schneider’s theories to evoke the universal characteristics of the zoomorphic code used to evoke attributes of different quality classes.</p>
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<p>(<b>a</b>) Symbolic notation of the -ith row-column of the 72 column positions [<a href="#B3-heritage-08-00043" class="html-bibr">3</a>] (pp. 230, 173). On the left: at the top, the notes actually sung by the zoomorphic code; at the bottom, the complete score. On the right: at the top, the days of the year; at the bottom, the distribution of the hour. At the bottom (<b>b</b>). (<b>b</b>) The representation of the small and large day. Above, in plan, and below, along the development of the four facades divided into categories of days and seasons [<a href="#B34-heritage-08-00043" class="html-bibr">34</a>] (p. 16).</p>
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<p>(<b>a</b>) Symbolic notation of the -ith row-column of the 72 column positions [<a href="#B3-heritage-08-00043" class="html-bibr">3</a>] (pp. 230, 173). On the left: at the top, the notes actually sung by the zoomorphic code; at the bottom, the complete score. On the right: at the top, the days of the year; at the bottom, the distribution of the hour. At the bottom (<b>b</b>). (<b>b</b>) The representation of the small and large day. Above, in plan, and below, along the development of the four facades divided into categories of days and seasons [<a href="#B34-heritage-08-00043" class="html-bibr">34</a>] (p. 16).</p>
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<p>Orthophotos of the reality-based 3D textured capitals Tonal correspondences derived from the interpretation of the ontological contents of the zoomorphic actions.</p>
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<p>(<b>a</b>) The Visual Basic screenshot regarding the functions quoted by the users; QR code to access the download of the software: <a href="https://extra.libreriauniversitaria.it/QR2.zip" target="_blank">https://extra.libreriauniversitaria.it/QR2.zip</a>; (accessed on 23 December 2024) (<b>b</b>) jumps between classes of characteristics with geometric rule (on the left) and random (on the right).</p>
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<p>(<b>a</b>) 38 photographs to obtain the spherical panorama; (<b>b</b>) equirectangular projections of the images acquired [<a href="#B33-heritage-08-00043" class="html-bibr">33</a>].</p>
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<p>(<b>a</b>) Virtual museum interface (<b>a</b>) view of the cloister panorama; (<b>b</b>) interactive visualization of one of the capitals. QR code link to access the virtual gallery: <a href="https://extra.libreriauniversitaria.it/QR3/cugat/SanCugat.html" target="_blank">https://extra.libreriauniversitaria.it/QR3/cugat/SanCugat.html</a> (accessed on 23 December 2024) [<a href="#B22-heritage-08-00043" class="html-bibr">22</a>,<a href="#B33-heritage-08-00043" class="html-bibr">33</a>].</p>
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23 pages, 3073 KiB  
Article
Automated System for Evaluating Alternatives for Developing Innovative IT Projects
by Iryna Pikh, Vsevolod Senkivskyy, Liubomyr Sikora, Nataliia Lysa and Alona Kudriashova
Appl. Sci. 2025, 15(3), 1167; https://doi.org/10.3390/app15031167 - 24 Jan 2025
Viewed by 414
Abstract
Software engineering occupies a prominent place in the theory and practice of simulation modeling, which necessitates scientific research in the field of methodological principles for forming software product quality. The problem of determining the optimal option for software development is one of the [...] Read more.
Software engineering occupies a prominent place in the theory and practice of simulation modeling, which necessitates scientific research in the field of methodological principles for forming software product quality. The problem of determining the optimal option for software development is one of the key ones in the field of information technology because it determines the quality of the final product and the efficiency of project management. The article considers the concept of developing an automated system, the basis of which is the software for assessing alternatives in the process of creating innovative IT projects. The main goal of the study is to model alternatives and select the optimal option for the process of creating an IT project using modern methodological approaches. For this purpose, the methods of ontological analysis, expert evaluation, multi-criteria optimization, pairwise comparisons and multi-factor selection of alternatives are applied. In the course of the research, a subset of Pareto factors is singled out and alternative development options are formed based on the method of linear convolution of criteria. The proposed methodology allows for assessing the importance of key factors and selecting the optimal option for the software development process. As a result, the developed approach contributes to strategic planning and increases the transparency of the decision-making process. The key result of the research is the created software product that allows one to automate the procedure for selecting the optimal solution for the IT project development process, providing reliable support for simulation modeling and increasing the efficiency of project management. The proposed methodology creates a new paradigm for making informed decisions regarding systems for creating complex software complexes. Full article
(This article belongs to the Special Issue Applications of Automated Management System)
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<p>Semantic network of relationships between IT project quality factors.</p>
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<p>A general ontological graph of classes.</p>
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<p>A multilevel model of factors influencing the IT project quality.</p>
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<p>Optimized model of priority influence of factors on the IT project quality.</p>
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<p>Program interface for selecting the optimal IT project.</p>
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39 pages, 24264 KiB  
Article
Digital Health Transformation: Leveraging a Knowledge Graph Reasoning Framework and Conversational Agents for Enhanced Knowledge Management
by Abid Ali Fareedi, Muhammad Ismail, Stephane Gagnon, Ahmad Ghazanweh and Zartashia Arooj
Systems 2025, 13(2), 72; https://doi.org/10.3390/systems13020072 - 22 Jan 2025
Viewed by 689
Abstract
The research focuses on the limitations of traditional systems in optimizing information flow in the healthcare domain. It focuses on integrating knowledge graphs (KGs) and utilizing AI-powered applications, specifically conversational agents (CAs), particularly during peak operational hours in emergency departments (EDs). Leveraging the [...] Read more.
The research focuses on the limitations of traditional systems in optimizing information flow in the healthcare domain. It focuses on integrating knowledge graphs (KGs) and utilizing AI-powered applications, specifically conversational agents (CAs), particularly during peak operational hours in emergency departments (EDs). Leveraging the Cross Industry Standard Process for Data Mining (CRISP-DM) framework, the authors tailored a customized methodology, CRISP-knowledge graph (CRISP-KG), designed to harness KGs for constructing an intelligent knowledge base (KB) for CAs. This KG augmentation empowers CAs with advanced reasoning, knowledge management, and context awareness abilities. We utilized a hybrid method integrating a participatory design collaborative methodology (CM) and Methontology to construct a domain-centric robust formal ontological model depicting and mapping information flow during peak hours in EDs. The ultimate objective is to empower CAs with intelligent KBs, enabling seamless interaction with end users and enhancing the quality of care within EDs. The authors leveraged semantic web rule language (SWRL) to enhance inferencing capabilities within the KG framework further, facilitating efficient information management for assisting healthcare practitioners and patients. This innovative assistive solution helps efficiently manage information flow and information provision during peak hours. It also leads to better care outcomes and streamlined workflows within EDs. Full article
(This article belongs to the Special Issue Integration of Cybersecurity, AI, and IoT Technologies)
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<p>Use cases diagram of autonomous conversational agent within PED context.</p>
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<p>Customized CRISP-KG approach for research design.</p>
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<p>A collaborative methodology for building emergency department based ontological model (PEDology) [<a href="#B46-systems-13-00072" class="html-bibr">46</a>].</p>
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<p>Knowledge graph construction pipeline and system architectural artefact.</p>
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<p>Systematic approach for the development of PEDology.</p>
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<p>Taxonomy of the different entities in PEDology ontological meta model: (<b>a</b>) Description of the role’s competence with respect to cultural competence, educational competence, and general competence; (<b>b</b>) Description of the role and their instances; (<b>c</b>) Description of the conversational agent and respective services with respect to healthcare professional and patient.</p>
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<p>Taxonomy of the different entities in PEDology ontological meta model: (<b>a</b>) Description of the role’s competence with respect to cultural competence, educational competence, and general competence; (<b>b</b>) Description of the role and their instances; (<b>c</b>) Description of the conversational agent and respective services with respect to healthcare professional and patient.</p>
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<p>PEDology ontological model and its visualization.</p>
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<p>Graphical representation of the PED ontology (PEDology) semantic model.</p>
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<p>PED SWRL production rules: (<b>a</b>) Description of the production rules written in SWRL plugin in Protege; (<b>b</b>) Description of the rule-based reasoning engine.</p>
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<p>PED ontology (PEDology) Validation Test.</p>
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<p>Login authentication view.</p>
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<p>Patient interactive session view.</p>
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<p>Patient related test recommendations and medicine recommendations based on SWRL view.</p>
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29 pages, 5539 KiB  
Article
Is Artificial Intelligence a Game-Changer in Steering E-Business into the Future? Uncovering Latent Topics with Probabilistic Generative Models
by Simona-Vasilica Oprea and Adela Bâra
J. Theor. Appl. Electron. Commer. Res. 2025, 20(1), 16; https://doi.org/10.3390/jtaer20010016 - 22 Jan 2025
Viewed by 1085
Abstract
Academic publications from the Web of Science Core Collection on “e-business” and “artificial intelligence” (AI) are investigated to reveal the role of AI, extract latent themes and identify potential research topics. The proposed methodology includes relevant graphical representations (trends, co-occurrence networks, Sankey diagrams), [...] Read more.
Academic publications from the Web of Science Core Collection on “e-business” and “artificial intelligence” (AI) are investigated to reveal the role of AI, extract latent themes and identify potential research topics. The proposed methodology includes relevant graphical representations (trends, co-occurrence networks, Sankey diagrams), sentiment analyses and latent topics identification. A renewed interest in these publications is evident post-2018, with a sharp increase in publications around 2020 that can be attributed to the COVID-19 pandemic. Chinese institutions dominate the collaboration network in e-business and AI. Keywords such as “business transformation”, “business value” and “e-business strategy” are prominent, contributing significantly to areas like “Operations Research & Management Science”. Additionally, the keyword “e-agribusiness” recently appears connected to “Environmental Sciences & Ecology”, indicating the application of e-business principles in sustainable practices. Although three sentiment analysis methods broadly agree on key trends, such as the rise in positive sentiment over time and the dominance of neutral sentiment, they differ in detail and focus. Custom analysis reveals more pronounced fluctuations, whereas VADER and TextBlob present steadier and more subdued patterns. Four well-balanced topics are identified with a coherence score of 0.66 using Latent Dirichlet Allocation, which is a probabilistic generative model designed to uncover hidden topics in large text corpora: Topic 1 (29.8%) highlights data-driven decision-making in e-business, focusing on AI, information sharing and technology-enabled business processes. Topic 2 (28.1%) explores AI and Machine Learning (ML) in web-based business, emphasizing customer service, innovation and workflow optimization. Topic 3 (23.6%) focuses on analytical methods for decision-making, using data modeling to enhance strategies, processes and sustainability. Topic 4 (18.5%) examines the semantic web, leveraging ontologies and knowledge systems to improve intelligent systems and web platforms. New pathways such as voice assistance, augmented reality and dynamic marketplaces could further enhance e-business strategies. Full article
(This article belongs to the Topic Data Science and Intelligent Management)
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<p>Flowchart of the proposed methodology.</p>
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<p>Number and cumulative growth in research publications, type and distribution of citations.</p>
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<p>Top ten most common keywords and the number of publications by research area (top ten).</p>
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<p>Word cloud on the Author Keywords column.</p>
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<p>Collaboration network of top seven institutions in e-business and AI. The numbers represent collaborations between universities and institutes.</p>
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<p>Co-occurrence of keywords in e-business and AI publications. The numbers are the co-occurrences where two keywords were found.</p>
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<p>Network of research areas and keywords in e-business and AI.</p>
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<p>Sankey diagram linking “business” term to research areas and publications years.</p>
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<p>Topics graphical representation. For topics see Chuang et al., 2012 [<a href="#B45-jtaer-20-00016" class="html-bibr">45</a>] and Sievert &amp; Shirley, 2014 [<a href="#B46-jtaer-20-00016" class="html-bibr">46</a>].</p>
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<p>Topics graphical representation. For topics see Chuang et al., 2012 [<a href="#B45-jtaer-20-00016" class="html-bibr">45</a>] and Sievert &amp; Shirley, 2014 [<a href="#B46-jtaer-20-00016" class="html-bibr">46</a>].</p>
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