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Search Results (368)

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22 pages, 28510 KiB  
Article
Predicting the Global Distribution of Nitraria L. Under Climate Change Based on Optimized MaxEnt Modeling
by Ke Lu, Mili Liu, Qi Feng, Wei Liu, Meng Zhu and Yizhong Duan
Plants 2025, 14(1), 67; https://doi.org/10.3390/plants14010067 - 28 Dec 2024
Viewed by 358
Abstract
The genus of Nitraria L. are Tertiary-relict desert sand-fixing plants, which are an important forage and agricultural product, as well as an important source of medicinal and woody vegetable oil. In order to provide a theoretical basis for better protection and utilization of [...] Read more.
The genus of Nitraria L. are Tertiary-relict desert sand-fixing plants, which are an important forage and agricultural product, as well as an important source of medicinal and woody vegetable oil. In order to provide a theoretical basis for better protection and utilization of species in the Nitraria L., this study collected global distribution information within the Nitraria L., along with data on 29 environmental and climatic factors. The Maximum Entropy (MaxEnt) model was used to simulate the globally suitable distribution areas for Nitraria L. The results showed that the mean AUC value was 0.897, the TSS average value was 0.913, and the model prediction results were excellent. UV-B seasonality (UVB-2), UV-B of the lowest month (UVB-4), precipitation of the warmest quarter (bio18), the DEM (Digital Elevation Model), and annual precipitation (bio12) were the key variables affecting the distribution area of Nitraria L, with contributions of 54.4%, 11.1%, 8.3%, 7.4%, and 4.1%, respectively. The Nitraria L. plants are currently found mainly in Central Asia, North Africa, the neighboring Middle East, and parts of southern Australia and Siberia. In future scenarios, except for a small expansion of the 2030s scenario model Nitraria L., the potential suitable distribution areas showed a decreasing trend. The contraction area is mainly concentrated in South Asia, such as Afghanistan and Pakistan, North Africa, Libya, as well as in areas of low suitability in northern Australia, where there was also significant shrinkage. The areas of expansion are mainly concentrated in the Qinghai–Tibet Plateau to the Iranian plateau, and the Sahara Desert is also partly expanded. With rising Greenhouse gas concentrations, habitat fragmentation is becoming more severe. Center-of-mass migration results also suggest that the potential suitable area of Nitraria L. will shift northwestward in the future. This study can provide a theoretical basis for determining the scope of Nitraria L. habitat protection, population restoration, resource management and industrial development in local areas. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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<p>Evaluation metrics of MaxEnt model generated by ENMeval.</p>
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<p>ROC curve for <span class="html-italic">Nitraria</span> L. using the MaxEnt model.</p>
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<p>The effect of environmental variables on the distribution of <span class="html-italic">Nitraria</span> L. plants was evaluated by the knife-cutting method.</p>
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<p>Response curves for key environmental predictors in the species distribution model for <span class="html-italic">Nitraria</span> L. (The red line represents the average value of all candidate models, and the blue range indicates the standard deviation, the same below).</p>
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<p>Maps of current potential habitat of <span class="html-italic">Nitraria</span> L. across the world.</p>
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<p>Future species distribution models (SDMs) of <span class="html-italic">Nitraria</span> L. under four climate change scenarios.</p>
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<p>Distribution changes in the future climate scenario of <span class="html-italic">Nitraria</span> L. compared to the current. Red means range shrinkage, orange means range unchanged, and yellow means range expansion.</p>
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<p>The core distributional shifts under different climate scenario/year for <span class="html-italic">Nitraria</span> L.</p>
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<p>Distribution of potential suitable areas in the current protection area of <span class="html-italic">Nitraria</span> L.</p>
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<p>Locations of 3307 distribution points of <span class="html-italic">Nitraria</span> L. across the world.</p>
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<p>Heat map of correlation between 29 environmental variables.</p>
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34 pages, 2586 KiB  
Review
Advancements and Perspective in the Quantitative Assessment of Soil Salinity Utilizing Remote Sensing and Machine Learning Algorithms: A Review
by Fei Wang, Lili Han, Lulu Liu, Chengjie Bai, Jinxi Ao, Hongjiang Hu, Rongrong Li, Xiaojing Li, Xian Guo and Yang Wei
Remote Sens. 2024, 16(24), 4812; https://doi.org/10.3390/rs16244812 - 23 Dec 2024
Viewed by 506
Abstract
Soil salinization is a significant global ecological issue that leads to soil degradation and is recognized as one of the primary factors hindering the sustainable development of irrigated farmlands and deserts. The integration of remote sensing (RS) and machine learning algorithms is increasingly [...] Read more.
Soil salinization is a significant global ecological issue that leads to soil degradation and is recognized as one of the primary factors hindering the sustainable development of irrigated farmlands and deserts. The integration of remote sensing (RS) and machine learning algorithms is increasingly employed to deliver cost-effective, time-efficient, spatially resolved, accurately mapped, and uncertainty-quantified soil salinity information. We reviewed articles published between January 2016 and December 2023 on remote sensing-based soil salinity prediction and synthesized the latest research advancements in terms of innovation points, data, methodologies, variable importance, global soil salinity trends, current challenges, and potential future research directions. Our observations indicate that the innovations in this field focus on detection depth, iterations of data conversion methods, and the application of newly developed sensors. Statistical analysis reveals that Landsat is the most frequently utilized sensor in these studies. Furthermore, the application of deep learning algorithms remains underexplored. The ranking of soil salinity prediction accuracy across the various study areas is as follows: lake wetland (R2 = 0.81) > oasis (R2 = 0.76) > coastal zone (R2 = 0.74) > farmland (R2 = 0.71). We also examined the relationship between metadata and prediction accuracy: (1) Validation accuracy, sample size, number of variables, and mean sample salinity exhibited some correlation with modeling accuracy, while sampling depth, variable type, sampling time, and maximum salinity did not influence modeling accuracy. (2) Across a broad range of scales, large sample sizes may lead to error accumulation, which is associated with the geographic diversity of the study area. (3) The inclusion of additional environmental variables does not necessarily enhance modeling accuracy. (4) Modeling accuracy improves when the mean salinity of the study area exceeds 30 dS/m. Topography, vegetation, and temperature are relatively significant environmental covariates. Over the past 30 years, the global area affected by soil salinity has been increasing. To further enhance prediction accuracy, we provide several suggestions for the challenges and directions for future research. While remote sensing is not the sole solution, it provides unique advantages for soil salinity-related studies at both regional and global scales. Full article
(This article belongs to the Section Biogeosciences Remote Sensing)
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<p>Soil salinity modeling and prediction process based on digital soil mapping.</p>
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<p>The study analyzes the types of remote sensing data and machine learning techniques employed in these 104 articles. The graphs on the left and right utilize pie charts to illustrate the percentage of each sensor type (used individually or in combination) and the various machine learning algorithms applied, respectively.</p>
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<p>Statistical characteristics of the metadata include modeling accuracy, validation accuracy, mean and maximum values of ECe, prediction accuracy across different regions, sample size, number of variables, and types of variables: (<b>a</b>) Range of accuracy of calibration model and validation model; (<b>b</b>) Range of R<sup>2</sup> values for modeling soil salinity in different regions; (<b>c</b>) Mean and maximum values of observed values; (<b>d</b>) Number of samples used to construct calibration model and validation model; (<b>e</b>) Number of variables and types involved in model construction. Rhombus are statistics for particular cases.</p>
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<p>Impact of metadata on prediction accuracy: (<b>a</b>) Relationship between calibration model and validation model; (<b>b</b>) Effect of number of observation samples on accuracy of calibration model; (<b>c</b>) Effect of sample observation depth on accuracy of calibration model; (<b>d</b>) Effect of number of variable types on accuracy of calibration model; (<b>e</b>) Relationship between number of variables and calibration model; (<b>f</b>) Effect of measurement time within year on calibration model; (<b>g</b>) Relationship between mean value of measurement values and accuracy of calibration model; (<b>h</b>) Relationship between maximum value of measurement values and accuracy of calibration model. Orange dots indicate significant relationships (<span class="html-italic">p</span> &lt; 0.05), black boxes indicate no significant relationships.</p>
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21 pages, 4999 KiB  
Article
Assessment of Spatio-Temporal Dynamic Vegetation Evolution and Its Driving Mechanism on the Kubuqi Desert Using Multi-Source Satellite Remote Sensing
by Linjiang Nan, Mingxiang Yang, Hejia Wang, Ping Miao, Hongli Ma, Hao Wang and Xinhua Zhang
Remote Sens. 2024, 16(24), 4769; https://doi.org/10.3390/rs16244769 - 21 Dec 2024
Viewed by 302
Abstract
Desert vegetation is undergoing complex and diverse changes due to global climate change and human activities. To effectively utilize water resources and promote ecological recovery in desert areas, it is necessary to clarify the main driving mechanisms of vegetation growth in these regions. [...] Read more.
Desert vegetation is undergoing complex and diverse changes due to global climate change and human activities. To effectively utilize water resources and promote ecological recovery in desert areas, it is necessary to clarify the main driving mechanisms of vegetation growth in these regions. In this study, based on MODIS and Landsat 8 remote sensing image data, the vegetation changes and driving mechanisms before and after water diversion in the Kubuqi Desert from 2001 to 2020 were quantitatively analyzed using multiple linear regression, random forest, support vector machine, and deep neural network. The results show that the average NDVI in the study area has increased from 0.08 to 0.13 over the past 20 years, and the year of NDVI mutation corresponded with the lowest precipitation, which occurred in 2010. After the water diversion, under the combined influence of human and natural factors, NDVI increased steadily without any abrupt changes, indicating that water is the main limiting factor for vegetation growth. The change of NDVI also showed obvious spatial heterogeneity, among which the improvement of the southwest irrigation area was the most significant, and the area with NDVI above 0.1 showed an expanding trend, and the maximum value exceeded 0.4. This demonstrates that moderate water diversion can reduce desert areas, expand lake areas, and promote vegetation growth, yielding positive ecological effects. The integration of multiple linear regression, support vector machines, random forests, and deep neural network methods effectively reveals the driving mechanisms of NDVI and indirectly informs future water diversion intervals. Overall, these research results can provide a reliable reference for the efficient development of water diversion projects and have high application value. Full article
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<p>Geographical location of the study area.</p>
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<p>Flowchart of the methods.</p>
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<p>Interannual variation trend of meteorological elements in the ecological management area from 2001 to 2020. ((<b>A</b>) indicates the variation trend of Pre and SSD; (<b>B</b>) indicates the variation trend of Tem and Wind; (<b>C</b>) indicates the variation trend of Tem-max and Tem-min; (<b>D</b>) indicates the variation trend of RHU).</p>
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<p>NDVI time series based on the Sen trend line.</p>
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<p>Results of the Pettitt mutation test.</p>
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<p>NDVI spatial distribution before and after water diversion in the ecological management area.</p>
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<p>Image display and spectral attribute ((<b>A</b>–<b>C</b>) represent true and false color composition and the spectral attribute of the lake in 2013, respectively; (<b>D</b>–<b>F</b>) are for Grassland in 2014, and (<b>G</b>–<b>I</b>) are for desert in 2019).</p>
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<p>Spatial change map of land use in the ecological management area.</p>
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19 pages, 2676 KiB  
Article
Bacterial Diversity Profiles of Desert Sand and Salt Crusts from the Gran Desierto de Altar, Sonora, Mexico
by Cristal Ramos-Madrigal, Esperanza Martínez-Romero, Yunuen Tapia-Torres and Luis E. Servín-Garcidueñas
Diversity 2024, 16(12), 745; https://doi.org/10.3390/d16120745 - 4 Dec 2024
Viewed by 671
Abstract
The Gran Desierto de Altar, located in Sonora, Mexico, represents an arid region that offers an opportunity to study microbial life under extreme conditions. This study analyzed the bacterial diversity present in two distinct types of desert sediments: sand dunes (SDs) and salt [...] Read more.
The Gran Desierto de Altar, located in Sonora, Mexico, represents an arid region that offers an opportunity to study microbial life under extreme conditions. This study analyzed the bacterial diversity present in two distinct types of desert sediments: sand dunes (SDs) and salt crusts (SCs) by culture-dependent and culture-independent methods. Environmental DNA was obtained for 16S rRNA gene amplicon sequencing to obtain taxonomic information using QIIME2. In SD, the bacterial communities comprised 24 phyla, with Actinobacteriota (30–40%), Proteobacteria (22–27%), Bacteroidota (9–11%), Firmicutes (7–10%), and Chloroflexi (3–6%) emerging as the most abundant. Notably, in SC, the archaeal phylum Halobacterota was predominant (37–58%). SC hosted 12 bacterial phyla, the most abundant being Firmicutes (14–30%), Bacteroidota (3–24%), and Proteobacteria (1–12%). Bacteria belonging to the phylum Firmicutes, including Metabacillus niabensis, Bacillus subtilis, Bacillus licheniformis, and Alkalibacillus haloalkaliphilus, were isolated using nutrient and saline media. Overall, our findings indicate that the taxonomic composition of the samples analyzed from the Gran Desierto de Altar is consistent with that found in arid environments worldwide. This study provides a basis for future studies focusing on microbial diversity, genetic potentials, and resistance mechanisms of microorganisms from arid environments. Full article
(This article belongs to the Section Microbial Diversity and Culture Collections)
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<p>Google Earth map illustrating the sampling sites in Pinacate and Gran Desierto de Altar, Sonora, México. The location of the sand dune (SD) sampling site is indicated with the pink pin. The location of the salt crust (SC) sampling site is indicated with the blue pin.</p>
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<p>Photographs of the sand dune (<b>A</b>) and salt crust (<b>B</b>) regions of Pinacate and Gran Desierto de Altar, Sonora, México, during sampling.</p>
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<p>Bar chart showing the relative abundance of bacteria and archaea at the phylum level in the SD samples of Pinacate and Gran Desierto de Altar, Sonora, Mexico (DUN1, DUN2, and DUN3). The bacterial and archaeal communities of the SD samples are composed of 25 different phyla.</p>
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<p>Relative abundance of the 31 most abundant genera in SD samples of Pinacate and Gran Desierto de Altar, Sonora, Mexico. The number of sequences that were assigned to each taxonomic group are shown on the X-axis. Only genera above 1% of the relative abundance are shown.</p>
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<p>Bar chart showing the relative abundance of bacteria and archaea at the phylum level in the two samples of SC of Pinacate and Gran Desierto de Altar, Sonora, Mexico (SED1 and SED2). The community of bacteria and archaea of the SC samples is composed of members representing 12 different bacteria phyla and only Halobacterota belonging to the Archaea domain.</p>
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<p>Relative abundance of the 17 most abundant genera in the SC samples from Pinacate and Gran Desierto de Altar, Sonora, Mexico. The number of sequences that were assigned to each taxonomic group is shown on the X-axis. Only genera above 0.5% of the relative abundance are shown.</p>
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<p>Two-dimensional PCoA diagram obtained from the analysis of the SD and SC samples of Pinacate and Gran Desierto de Altar, Sonora, Mexico, by the weighted UNIFRAC method. Pairwise PERMANOVA results comparing microbial communities between SC and SD samples showed no statistically significant difference between sites (p = 0.105, q = 0.105). The analysis was based on 999 permutations and revealed a pseudo-F value of 16.148.</p>
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<p>Venn diagram illustrating the relationship between the SD and SC samples from Pinacate and Gran Desierto de Altar, Sonora, Mexico. The diagram indicates the number of shared and unique genera for each sample type.</p>
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<p>Volcano plot displaying the results of the ANCOM analysis. In this plot, the <span class="html-italic">y</span>-axis (W or W score) represents the frequency with which a bacterial taxon (genus in this case) was identified as differentially abundant when compared to the other samples included in the analysis. This value reflects the robustness of the result for each trait. The higher the W value, the stronger the evidence that a bacterial genus has significant differences in abundance between the compared samples. The <span class="html-italic">x</span>-axis represents the difference in the relative abundance of the trait between the groups or samples compared on a logarithmic scale. Positive values indicate higher abundance in one group, while negative values indicate higher abundance in the other. The ANCOM statistical results found no significant features between the SD and SC samples of Pinacate and Gran Desierto de Altar, Sonora, Mexico.</p>
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14 pages, 9769 KiB  
Article
The Correlation Between the Chemical Composition and the Microstructure of the Polysaccharides of Two Varieties of Mexican Red Prickly Pear Fruits
by Yvonne Roman Maldonado, Socorro Josefina Villanueva-Rodríguez, Hilda María Hernández-Hernández, Eduardo Terrés and Jesus Cervantes Martinez
Foods 2024, 13(23), 3914; https://doi.org/10.3390/foods13233914 - 4 Dec 2024
Viewed by 584
Abstract
The red prickly pear fruit (Opuntia ficus-indica L. Mill), endemic from Mexico’s semi-desert regions and present in North Africa and Southern Europe, particularly Italy and Spain, is a valuable source of nutrients, bioactive compounds, and polysaccharides. This study used non-destructive techniques like [...] Read more.
The red prickly pear fruit (Opuntia ficus-indica L. Mill), endemic from Mexico’s semi-desert regions and present in North Africa and Southern Europe, particularly Italy and Spain, is a valuable source of nutrients, bioactive compounds, and polysaccharides. This study used non-destructive techniques like microscopy and Raman and infrared (IR) spectroscopy to characterize polysaccharides extracted from two red prickly pear varieties. The polysaccharides constitute approximately 80% of the peel and 39–18% of the pulp; microscopy provided insights into its microstructural details, while Raman and IR spectroscopy enabled the identification of its specific functional groups. The results revealed distinct microstructural attributes: mucilage displays a microstructure influenced by the ratio of acidic to neutral sugar monomers; pectin exhibits a low degree of methoxylation alongside a characteristic egg-box structure facilitated by calcium ions; hemicellulose presents a delicate, porous layer; and cellulose reveals a layered microstructure supported by thin or robust fibers and calcium crystals. The functional groups identified via Raman and IR spectroscopy provided specific information that could be used to infer chemical interactions influenced by functional groups like hydroxyl, carboxyl, and methyl, suggesting potential binding, stabilization, and water retention properties that enhance their utility as functional ingredients in food products. These findings, obtained using non-destructive methods, enhance the understanding of the compositional and microstructural characteristics of polysaccharides in the red prickly pear, which, in turn, can be used to predict their promising technological applications as functional ingredients. Full article
(This article belongs to the Section Plant Foods)
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<p>SEM images of mucilage from the peel and pulp obtained from the red prickly pear, Cardona ((<b>A1</b>,<b>A2</b>)—300×; (<b>A3</b>)—500×) and Zacatecas varieties ((<b>B1</b>,<b>B2</b>)—300×). The IR spectrum of mucilage obtained from the pulp and peel of the Cardona variety is also shown (<b>B3</b>).</p>
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<p>Imagen SEM images (500×) of pectin from the peel and pulp obtained from the red prickly pear, Cardona (<b>A1</b>,<b>A2</b>) and Zacatecas varieties (<b>B1</b>,<b>B2</b>). IR (<b>B3</b>) and Raman (<b>A3</b>) spectra of the pectin obtained from the pulp and peel of both varieties are also shown.</p>
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<p>SEM images of hemicellulose extracted from the pulp ((<b>A1</b>,<b>B1</b>): 500×) and peel ((<b>A2</b>,<b>B2</b>): 500×; (<b>A3</b>): 300×) of the red prickly pear. Raman spectra of the hemicelluloses are presented in (<b>B3</b>).</p>
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<p>SEM images of the cellulose extracted from the pulp ((<b>A1</b>): 300×; (<b>B1</b>): 500×) and cellulose extracted from the peel ((<b>A2</b>), 500×; (<b>B2</b>), 300×) of the red prickly pear. Raman spectra of the celluloses are presented in (<b>A3</b>) and (<b>B3</b>).</p>
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20 pages, 4466 KiB  
Article
Establishment and Validation of an Efficient Agrobacterium Tumefaciens-Mediated Transient Transformation System for Salix Psammophila
by Yanfei Yang, Zhicheng Chen, Jinna Zhao, Guangshun Zheng, Fei Wang, Shaofeng Li, Xingrong Ren and Jianbo Li
Int. J. Mol. Sci. 2024, 25(23), 12934; https://doi.org/10.3390/ijms252312934 - 1 Dec 2024
Viewed by 948
Abstract
Salix psammophila, C. Wang & Chang Y. Yang, a desert-adapted shrub, is recognized for its exceptional drought tolerance and plays a vital role in ecosystem maintenance. However, research on S. psammophila has been limited due to the lack of an efficient and [...] Read more.
Salix psammophila, C. Wang & Chang Y. Yang, a desert-adapted shrub, is recognized for its exceptional drought tolerance and plays a vital role in ecosystem maintenance. However, research on S. psammophila has been limited due to the lack of an efficient and reliable genetic transformation method, including gene functional studies. The Agrobacterium-mediated transient overexpression assay is a rapid and powerful tool for analyzing gene function in plant vivo. In this study, tissue culture seedlings of S. psammophila were utilized as the recipient materials, and the plant expression vector pCAMBIA1301, containing the GUS reporter gene, was transferred into the seedlings via an Agrobacterium-mediated method. To enhance the efficiency of the system, the effects of secondary culture time, Agrobacterium concentration, infection time, and co-culture duration on the transient transformation efficiency of S. psammophila were explored. The optimal combination for the instantaneous transformation of S. psammophila tissue culture seedlings mediated by Agrobacterium was determined as follows: a secondary culture time of 30 d, a value of OD600 of 0.8, an infection time of 3 h, and a co-culture duration of 48 h. Subsequently, the effectiveness of the transformation system was validated using the S. psammophila drought response gene SpPP2C80. To further confirm the accuracy of the system, SpPP2C80-overexpressing Arabidopsis was constructed and drought resistance analysis was performed. The results were consistent with the transient overexpression of SpPP2C80 in S. psammophila tissue culture seedlings, indicating that this system can be effectively employed for studying gene function in S. psammophila. These findings provide essential information for investigating gene function in non-model plants and pave the way for advancements in molecular biology research in S. psammophila. Full article
(This article belongs to the Special Issue New Insights into Environmental Stresses and Plants)
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<p>Effect of secondary culture time on transient transformation of <span class="html-italic">S. psammophila</span>. (<b>A</b>) GUS staining of transient transgenic <span class="html-italic">S. psammophila</span> seedlings. (<b>B</b>) Transient transformation rate. Values are means ± SD; the difference between different letters is significant (<span class="html-italic">p</span> &lt; 0.05), while the difference between the same letters is not significant (<span class="html-italic">p</span> &gt; 0.05); <span class="html-italic">n</span> = 3.</p>
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<p>Effect of <span class="html-italic">Agrobacterium</span> concentration on transient transformation of <span class="html-italic">S. psammophila</span>. (<b>A</b>) GUS staining of transient transgenic <span class="html-italic">S. psammophila</span> seedlings. (<b>B</b>) Transient transformation rate. Values are means ± SD; the difference between different letters is significant (<span class="html-italic">p</span> &lt; 0.05), while the difference between the same letters is not significant (<span class="html-italic">p</span> &gt; 0.05); <span class="html-italic">n</span> = 3.</p>
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<p>Effect of infection time on transient transformation of <span class="html-italic">S. psammophila</span>. (<b>A</b>) GUS staining of transient transgenic <span class="html-italic">S. psammophila</span> seedlings. (<b>B</b>) Transient transformation rate. Values are means ± SD; the difference between different letters is significant (<span class="html-italic">p</span> &lt; 0.05), while the difference between the same letters is not significant (<span class="html-italic">p</span> &gt; 0.05); <span class="html-italic">n</span> = 3.</p>
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<p>Effect of co-culture duration on transient transformation of <span class="html-italic">S. psammophila</span>. (<b>A</b>) GUS staining of transient transgenic <span class="html-italic">S. psammophila</span> seedlings. (<b>B</b>) Transient transformation rate. Values are means ± SD; the difference between different letters is significant (<span class="html-italic">p</span> &lt; 0.05), while the difference between the same letters is not significant (<span class="html-italic">p</span> &gt; 0.05); <span class="html-italic">n</span> = 3.</p>
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<p>Identification of transient transgenic <span class="html-italic">S. psammophila</span> and expression analysis. (<b>A</b>) GUS staining of transient transgenic <span class="html-italic">S. psammophila</span> seedlings. (<b>B</b>) GUS staining of root, stem, and leaf of transient transgenic <span class="html-italic">S. psammophila</span> seedlings. (<b>C</b>) Transient expression analysis of <span class="html-italic">S. psammophila</span> stress resistance genes under abiotic stresses. CK: <span class="html-italic">S. psammophila</span> seedlings transformed with empty pCAMBIA1301; OE: <span class="html-italic">S. psammophila</span> seedlings overexpressing <span class="html-italic">SpPP2C80.</span> Values are means ± SD, ** indicates significant differences compared with the CK at the <span class="html-italic">p</span> &lt; 0.01 level, <span class="html-italic">n</span> = 3.</p>
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<p>Physiological index analysis of <span class="html-italic">S. psammophila</span> seedlings of CK and OE under drought stress. (<b>A</b>) NBT and (<b>B</b>) DAB staining. (<b>C</b>) CAT activity levels. (<b>D</b>) SOD activity levels. (<b>E</b>) POD activity levels. (<b>F</b>) MDA content. CK: <span class="html-italic">S. psammophila</span> seedlings transformed with empty pCAMBIA1301; OE: <span class="html-italic">S. psammophila</span> seedlings overexpressing <span class="html-italic">SpPP2C80.</span> Values are means ± SD, * and ** indicate significant differences compared with the CK at the <span class="html-italic">p</span> &lt; 0.05 level and <span class="html-italic">p</span> &lt; 0.01 level, <span class="html-italic">n</span> = 3.</p>
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<p>Analysis of drought tolerance of <span class="html-italic">Arabidopsis</span> under 1/2 MS medium and soil growth conditions. (<b>A</b>) Photos of WT and transgenic <span class="html-italic">Arabidopsis</span> seedlings under normal and drought conditions. (<b>B</b>) Photos of WT and transgenic seedlings under normal conditions and drought treatment. WT and two independent transgenic lines grew in soil, with 5 seedlings per genotype. Soil treatment includes three biological replicates. (<b>C</b>) Relative expression levels of <span class="html-italic">SpPP2C80</span> in WT and transgenic <span class="html-italic">Arabidopsis</span>. (<b>D</b>) Root length. (<b>E</b>) Fresh weigh. (<b>F</b>) Survival rate. (<b>G</b>) Relative electrical conductivity (REC). (<b>H</b>) Relative water content (RWC) of WT and transgenic <span class="html-italic">Arabidopsis</span> under normal and drought conditions. Bars = 5 cm. Values are means ± SD, * and ** indicate significant differences compared with the CK at the <span class="html-italic">p</span> &lt; 0.05 level and <span class="html-italic">p</span> &lt; 0.01 level, <span class="html-italic">n</span> = 3.</p>
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<p>Study on antioxidant enzyme activity in WT and transgenic <span class="html-italic">Arabidopsis</span>. (<b>A</b>) NBT and (<b>B</b>) DAB staining of rosette leaves from drought-treated and normally grown WT and transgenic <span class="html-italic">Arabidopsis</span> plants. (<b>C</b>–E) Analysis of CAT, SOD, and POD activities under control and drought conditions. (<b>F</b>) AsA content. Bars = 5 cm. Values are means ± SD, * and ** indicate significant differences compared with the WT at the <span class="html-italic">p</span> &lt; 0.05 level and <span class="html-italic">p</span> &lt; 0.01 level, <span class="html-italic">n</span> = 3.</p>
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<p>Flow chart of <span class="html-italic">Agrobacterium</span>-mediated transient transformation system for the development of transgenic <span class="html-italic">S. psammophila</span> plants.</p>
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19 pages, 3459 KiB  
Review
Remote Sensing for Urban Biodiversity: A Review and Meta-Analysis
by Michele Finizio, Federica Pontieri, Chiara Bottaro, Mirko Di Febbraro, Michele Innangi, Giovanna Sona and Maria Laura Carranza
Remote Sens. 2024, 16(23), 4483; https://doi.org/10.3390/rs16234483 - 29 Nov 2024
Viewed by 1104
Abstract
Urban settlements can support significant biodiversity and provide a wide range of ecosystem services. Remote sensing (RS) offers valuable tools for monitoring and conserving urban biodiversity. Our research, funded by the Italian Recovery and Resilience Plan (National Biodiversity Future Centre—Urban Biodiversity), undertakes a [...] Read more.
Urban settlements can support significant biodiversity and provide a wide range of ecosystem services. Remote sensing (RS) offers valuable tools for monitoring and conserving urban biodiversity. Our research, funded by the Italian Recovery and Resilience Plan (National Biodiversity Future Centre—Urban Biodiversity), undertakes a systematic scientific review to assess the current status and future prospects of urban biodiversity evaluation using RS. An extensive literature search of indexed peer-reviewed papers published between 2008 and 2023 was conducted on the Scopus database, using a selective choice of keywords. After screening the titles, abstracts, and keywords of 500 articles, 117 relevant papers were retained for meta-data analysis. Our analysis incorporated technical (e.g., sensor, platform, algorithm), geographic (e.g., country, city extent, population) and ecological (biodiversity target, organization level, biome) meta-data, examining their frequencies, temporal trends (Generalized Linear Model—GLM), and covariations (Cramer’s V). The rise in publications over time is linked to the increased availability of imagery, enhanced computing power, and growing awareness of the importance of urban biodiversity. Most research focused on the Northern Hemisphere and large metropolitan areas, with smaller cities often overlooked. Consequently, data coverage is predominantly concentrated on Mediterranean and temperate habitats, with limited attention given to boreal, desert, and tropical biomes. A strong association was observed between the source of RS data (e.g., satellite missions), pixel size, and the purpose of its use (e.g., modeling, detection). This research provides a comprehensive summary of RS applications for evaluating urban biodiversity with a focus on the biomes studied, biodiversity targets, and ecological organization levels. This work can provide information on where future studies should focus their efforts on the study of urban biodiversity using remote sensing instruments in the coming years. Full article
(This article belongs to the Section Urban Remote Sensing)
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<p>Diagram describing the flow of information through the different phases of the systematic review, along with the summary of the meta-data collected for the database and the implemented meta-data analysis.</p>
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<p>Number of studies by country categorized into frequency classes (colors) along with the analyzed cities (dots). Dot size is proportional to the number of papers per city. For cities that are reported in more than one study, the city’s name is also reported. Map (EPSG:4326).</p>
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<p>Temporal trend of the number of RS-supported urban biodiversity studies per year (2008–2023), based on 117 samples extracted from Scopus and fitted using a GLM using with a Poisson error distribution.</p>
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<p>Percentage of articles that use RS data for biodiversity studies in urban areas by (<b>a</b>) Source-Missions (Missions with a percentage less than 2%: GeoEye, RapidEye, SPOT 7, GF-1, GF-2, QuickBird 2, SPOT 6, ALOS 1, ASTER, Beijing 2, JL1-3B, Landsat 1, Landsat 2, Landsat 3, Landsat 4, ResourcesSat 2, SPOT 1, and WorldView-4); (<b>b</b>) Spectral Resolution (Spectral resolution with a percentage less than 2%: Hyperspectral, RADAR, and Undefined Spectral Resolution); (<b>c</b>) Use of RS; (<b>d</b>) Biodiversity target, (<b>e</b>) Organization level; (<b>f</b>) Biome (TBMF: Temperate Broadleaf and Mixed Forests, MFWS: Mediterranean Forests, Woodlands and Scrub, TSMBF: Tropical and Subtropical Moist Broadleaf Forest, TGSS: Temperate Grasslands, Savannahs and Shrublands, TCF: Temperate Conifer Forests, TSGSS: Tropical and Subtropical Grasslands, Savannahs and Shrublands; biome with a percentage less than 3%: DXS: Deserts and Xeric Shrublands, MGS: Montane Grasslands and Shrublands, BF: Boreal Forests, and TSDBF: Tropical and Subtropical Dry Broadleaf Forests); (<b>g</b>) Type of Urban site (Urban Site with a percentage less than 2%: Grassland and Mountain); (<b>h</b>) Urban Size (LMA: Large Metropolitan Area, MA: Metropolitan Area, MSUA: Medium-Size Urban Area, SUA: Small Urban Area, and VSUA: Very Small Urban Area). All pie charts achieve a percentage of 100% in total, for convenience some percentages are not evident to make the figure more readable.</p>
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<p>Temporal trends in the number of articles per biodiversity target (animals, plants, habitat, landscape) for each type of urban site (urban mosaic, forests, green areas, wetlands). (<b>a</b>) Temporal trend representing different biodiversity target in urban forest site; (<b>b</b>) temporal trend representing different biodiversity target in urban green area site; (<b>c</b>) temporal trend representing different biodiversity target in urban mosaic site; (<b>d</b>) temporal trend representing different biodiversity target in urban wetland site.</p>
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<p>Chord diagrams depicting interactions between (<b>a</b>) RS source-mission and the use of RS; (<b>b</b>) pixel size (in m) and use of RS; (<b>c</b>) type of urban site and use of RS; (<b>d</b>) RS source and single or multispecies category.</p>
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13 pages, 4129 KiB  
Article
Estimating an Elephant Population Size Through Local Ecological Knowledge
by Michael Wenborn, Magdalena S. Svensson and Vincent Nijman
Biology 2024, 13(12), 971; https://doi.org/10.3390/biology13120971 - 25 Nov 2024
Viewed by 552
Abstract
In planning and monitoring measures to protect wildlife in an area, it is important to have a reliable baseline estimate of population size and trends. There has been minimal published information on a small population of elephants, a keystone and endangered species, in [...] Read more.
In planning and monitoring measures to protect wildlife in an area, it is important to have a reliable baseline estimate of population size and trends. There has been minimal published information on a small population of elephants, a keystone and endangered species, in a large area west of Etosha National Park in Namibia, known locally as the Northern Highlands. It is a highly remote, mountainous area in which it is difficult to count elephants. It is semi-desert, where the protection of wildlife is at increasing risk from climate change events, and research on the elephant population is a priority. We interviewed 34 community game guards in the Northern Highlands, focusing on the number of elephants and distinguishing features in known groups. Based on the collated knowledge, and analysis to reduce double counting of known groups, we estimate that there are between 78 and 212 elephants in the Northern Highlands, with a best estimate of 128. The wide range is an indication of the current uncertainties in the method. However, we conclude that this low-cost method, if adapted based on lessons from this pilot study, would be applicable for longer-term ecological monitoring in areas that have a low population density. Full article
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<p>Conservancies in the Northern Highlands of Namibia, highlighting the main six conservancies covered in this study, as well as the elephant range. Key 1: Ehi-Rovipuka; 2: Orupupa; 2a: Additional area monitored by Orupupa; 3: Otuzemba; 3a: Additional area monitored by Otuzemba; 4: Omatendeka; 5: Ozondundu; 6: Okangundumba; 7: Otjombande; 8: Okongoro; 9: Otjindjerese; 10: Otjikondovirongo; 11: Ombujokanguindi; 12: Okatjandja Kozomenje; 13. Anabeb. The thick green line encompasses the Northern Highlands, whereas the conservancies covered in this study are coloured dark grey. According to [<a href="#B1-biology-13-00971" class="html-bibr">1</a>] the range of elephants is within the dashed line.</p>
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<p>(<b>a</b>) Game guard meeting community members to investigate damage by African savannah elephants at a water point in Ekoto, Orupupa Conservancy; (<b>b</b>) game guard observing evidence of elephant movements on patrol; (<b>c</b>) game guard on patrol identifying a tree partly eaten by elephants as evidence of elephant movements; (<b>d</b>) an elephant in the lower Hoanib with a missing tusk and torn ear, as an example of distinguishing features that can help identify individuals or groups of elephants; (<b>e</b>) game guards observing an elephant in Ozondundu Conservancy; (<b>f</b>) elephant in Omatendeka Conservancy in the shade of trees near the main river bed, demonstrates that it is difficult to observe and count elephants.</p>
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<p>Number of African savannah elephants (<span class="html-italic">Loxodonta africana</span>) groups known by game guards in the Northern Highlands of Namibia.</p>
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<p>Number of game guards knowing groups of a specific size for the 61 known African savannah elephants (<span class="html-italic">Loxodonta africana</span>) groups in Namibia’s Northern Highlands with Category A level of certainty.</p>
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13 pages, 3125 KiB  
Perspective
A Qualitative Model Demonstrating the Adaptation of Amphibians to Semi-Arid and Arid Habitats: Comparing the Green Toad Bufotes sitibundus (Pallas, 1771) and Pelophylax bedriagae (Camerano, 1882)
by Gad Degani
Animals 2024, 14(23), 3351; https://doi.org/10.3390/ani14233351 - 21 Nov 2024
Viewed by 581
Abstract
In this brief article, the green toad (Bufotes sitibundus) and the Levant water frog (Pelophylax bedriagae) were compared to better understand the adaptations needed by amphibians, specifically the green toad, to survive in arid regions and to inhabit a [...] Read more.
In this brief article, the green toad (Bufotes sitibundus) and the Levant water frog (Pelophylax bedriagae) were compared to better understand the adaptations needed by amphibians, specifically the green toad, to survive in arid regions and to inhabit a wide range of habitats. The information mainly comes from data gathered in Israel, a nation experiencing a shift from Mediterranean to desert ecosystems where both amphibian species can be found. Using these data, a qualitative model is put forward that showcases the differences between these two amphibians and illustrates how the green toad has adapted to arid environments. For instance, green toads travel to breeding and spawning sites during the rainy season. During this journey, they often have to cross roads, which puts them at risk of being hit by vehicles. The main distinction between the green toad and the water frog is that the green toad moves from land environments to water, while the water frog stays in its aquatic habitat for its entire life cycle. Full article
(This article belongs to the Section Herpetology)
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<p>Distribution and habitat of the green toad (<b>A</b>) and the Levant water frog (<b>B</b>) in Israel, the Gaza Strip, and the Palestinian territories. The data on the green toad and the Levant water frog were collected in areas across Israel, including both natural habitats and modified environments such as agricultural fields, ponds, and urban regions. These regions provided a diverse range of ecological conditions essential for understanding the species’ distribution, behavior, and adaptability. The maximum and minimum water temperatures in which green toad tadpoles and Levant water frog tadpoles grow were measured in a winter pond (Sasa pond) where six amphibian species native to Israel are found. The environmental conditions for these species have not been studied in Israel.</p>
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<p>The map show the places in Israel that green toads were found in Israel (1–26). The Cyt b gene was measured for sample 21. Nucleotide similarity and divergence analysis of 21 Cyt b sequences of green toad species from a single location in Israel and 4 other countries: Egypt, Turkey, Germany, and Iran, adapted from [<a href="#B3-animals-14-03351" class="html-bibr">3</a>].</p>
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<p>Nucleotide similarity and variation among 17 control region sequences of green toads from sites in Israel and 4 other countries: Egypt, Turkey, Iran, and Germany, adapted from [<a href="#B3-animals-14-03351" class="html-bibr">3</a>].</p>
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<p>Unrooted phylogenetic tree and percentage identity of the partial Cyt b fragment based on the nucleotide sequence of the Levant water frog. The length of each branch pair illustrates the distance between the sequences, with the units at the bottom representing the number of substitution events. The phylogenetic tree was generated using CLUSTALW in the MegAlign program (DNASTAR). The length of the branches reflects the evolutionary distance. B. Fara Pond. C. Kash Pond. D. Raihania Pond. E. Sasa Pond, adapted from [<a href="#B12-animals-14-03351" class="html-bibr">12</a>,<a href="#B22-animals-14-03351" class="html-bibr">22</a>].</p>
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<p>A qualitative model that demonstrates the relationship between genetic variation and adaptation to different environments. Wide genetic variation and distribution confirm adaptation to different environments in Israel (the green toad), and narrower genetic variation (the Levant water frog) reflects narrower area distribution, adapted from [<a href="#B1-animals-14-03351" class="html-bibr">1</a>].</p>
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<p>(<b>A</b>). Green toads migrate to breeding and spawning areas during the rainy season. During this migration, the toads cross roads, and are at risk of being run over [<a href="#B1-animals-14-03351" class="html-bibr">1</a>]. (<b>B</b>). The primary difference between the green toad and the water frog is that the former migrates from terrestrial habitats to water bodies, whereas the latter remains in its aquatic habitat throughout its life cycle, adapted from [<a href="#B1-animals-14-03351" class="html-bibr">1</a>].</p>
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<p>Dimensions of water frog and green toad tadpoles during the growth period in different bodies of water in northern Israel. The findings were collected from several studies summarized in Degani’s 2024 work, adapted from [<a href="#B1-animals-14-03351" class="html-bibr">1</a>].</p>
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<p>A qualitative model describing the features for adaptation to a semi-arid or arid habitat (the green toad) compared to a semi-aquatic species (the water frog) adapted to a habitat where water is present most or all of the time. The adaptation of tadpoles to winter puddles is evident in their high egg-laying capacity, rapid growth, and swift completion of metamorphosis, as seen in the acute phase model of the green doad. After metamorphosis, the green toad exhibits adaptations for terrestrial life, including water storage and the ability to accumulate urea, which enables a high osmotic pressure in body fluids, facilitating water absorption from the soil.</p>
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19 pages, 3893 KiB  
Article
Assessing Suitable Areas for PV Power Installation in Remote Agricultural Regions
by Abdelfetah Belaid, Mawloud Guermoui, Reski Khelifi, Toufik Arrif, Tawfiq Chekifi, Abdelaziz Rabehi, El-Sayed M. El-Kenawy and Amel Ali Alhussan
Energies 2024, 17(22), 5792; https://doi.org/10.3390/en17225792 - 20 Nov 2024
Viewed by 626
Abstract
Remote agricultural regions in desert areas, such as Ghardaïa in southern Algeria, face significant challenges in energy supply due to their isolated locations and harsh climatic conditions. Harnessing solar energy through photovoltaic (PV) systems offers a sustainable solution to these energy needs. This [...] Read more.
Remote agricultural regions in desert areas, such as Ghardaïa in southern Algeria, face significant challenges in energy supply due to their isolated locations and harsh climatic conditions. Harnessing solar energy through photovoltaic (PV) systems offers a sustainable solution to these energy needs. This study aims to identify suitable areas for PV power installations in Ghardaïa, utilizing a geographic information system (GIS) combined with the fuzzy analytical hierarchy process (AHP). Various environmental, economic, and technical factors, such as solar radiation, land use, and proximity to infrastructure, are incorporated into the analysis to create a multi-criteria decision-making framework. The integration of fuzzy logic into AHP enables a more flexible evaluation of these factors. The results revealed the presence of ideal locations for installing photovoltaic stations, with 346,673.30 hectares identified as highly suitable, 977,606.84 hectares as very suitable, and 937,385.97 hectares as suitable. These areas are characterized by high levels of solar radiation and suitable infrastructure availability, contributing to reduced implementation costs and facilitating logistical operations. Additionally, the proximity of these locations to agricultural areas enhances the efficiency of electricity delivery to farmers. The study emphasizes the need for well-considered strategic planning to achieve sustainable development in remote rural areas. Full article
(This article belongs to the Section A2: Solar Energy and Photovoltaic Systems)
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<p>Study area map: Ghardaïa City.</p>
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<p>Flowchart of the methodology.</p>
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<p>Overview maps for all evaluation criteria. (<b>a</b>) GHI; (<b>b</b>) slope; (<b>c</b>) DEM; (<b>d</b>) aspect; (<b>e</b>) LULC; (<b>f</b>) agricultural zones; (<b>g</b>) pipelines; (<b>h</b>) roads; (<b>i</b>) power grid.</p>
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<p>Suitability map for photovoltaic-agriculture.</p>
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<p>High suitability map for photovoltaic–agriculture integration.</p>
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34 pages, 27085 KiB  
Article
Integrated Framework for Enhancing Liveability and Ecological Sustainability in UAE Communities
by Mhd Amer Alzaim, Mariam AlAli, Yara Mattar and Fatin Samara
Sustainability 2024, 16(22), 9872; https://doi.org/10.3390/su16229872 - 12 Nov 2024
Viewed by 979
Abstract
Urban growth is vast in the United Arab Emirates (UAE) due to economic development, and there is a need to consider liveability and sustainable ecosystems for future urban expansion. Promising strategies for sustainability focus on minimizing a building’s effects on the environment and [...] Read more.
Urban growth is vast in the United Arab Emirates (UAE) due to economic development, and there is a need to consider liveability and sustainable ecosystems for future urban expansion. Promising strategies for sustainability focus on minimizing a building’s effects on the environment and improving residents’ quality of life, which is important in the desert and when confronting the issues of water and climate change. Sustainable practices that impact the livelihood of people in the UAE include factors such as walkable areas, open space, policing, healthcare, education, housing, and ensuring friendly transport that enhance the overall quality of life of residents in the region. Recognizing and appreciating the UAE’s cultural values is crucial when incorporating these aspects, allowing references to the nation’s character when creating communal areas. The primary research included quantitative surveys of three identified communities, composed of fifty participants each, where the findings indicate partial to full compliance, with 85.7% of the liveability indices being about public transport and green space. Through this analysis, liveability and sustainability principles need to be trialed and incorporated into future urban development to embrace the ecology as well as the inhabitants. To realize these targets, the proposed study adopted a four-part approach. Initially, an analysis of related studies concerning the UAE or the Gulf area was carried out to obtain important liveability and quality-of-life factors. A total of 6 dimensions and 51 indicators were extracted from the literature to inform the next stage. Subsequently, the authors identified and evaluated the design of three chosen communities in various cities in the UAE concerning liveability and sustainability indices. Consequently, a conceptual redesign of a typical community was made, illustrating the improved quality of life and sustainability. Lastly, a survey with respective facets from an urban planning architect and environmental scientist cum environmental economist was conducted to evaluate the practicality of the proposed design. This research gives a comprehensive picture of how liveability and sustainable ecosystem concepts need to be implemented in the UAE urban context and offers a direction to develop lively, context-specific, culturally attached, and sustainable urban environments for the present day and for the future. Full article
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<p>Research methodology flowchart.</p>
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<p>Snapshot of Khalifa City community in Abu Dhabi. The red box indicates the perimeter of the study community.</p>
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<p>Snapshot of Al Barsha 3 community in Dubai. The red box indicates the perimeter of the study community.</p>
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<p>Snapshot of Al Darari community in Sharjah. The red box indicates the perimeter of the study community.</p>
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<p>(<b>a</b>) Master plan concept of the proposed design. (<b>b</b>) Natural dunes present in the UAE desert.</p>
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<p>Villa type L: 230 sqm (purple), villa type M: 75 sqm (red), and villa type S: 44 sqm (green).</p>
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<p>Infrastructure and accessibility.</p>
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<p>Zoning of living activities.</p>
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<p>Access to essential amenities.</p>
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<p>Living communities.</p>
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<p>Visual No. 1.</p>
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<p>Visual No. 2.</p>
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<p>Visual No. 3.</p>
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<p>Visual No. 4.</p>
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<p>LA unit typology—L (four-bedroom villa).</p>
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<p>LA unit typology—M (three-bedroom villa).</p>
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<p>LA unit typology—SS (two-bedroom villa).</p>
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<p>Unit M—front view.</p>
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<p>Unit L and M—courtyard.</p>
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<p>Unit L—back view.</p>
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<p>Unit SS—back view.</p>
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<p>Unit SS—front view.</p>
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22 pages, 6361 KiB  
Article
Topography Dominates the Spatial and Temporal Variability of Soil Bulk Density in Typical Arid Zones
by Jia Guo, Yanmin Fan, Yunhao Li, Yanan Bi, Shuaishuai Wang, Yutong Hu, Li Zhang and Wenyue Song
Sustainability 2024, 16(22), 9670; https://doi.org/10.3390/su16229670 - 6 Nov 2024
Viewed by 842
Abstract
Soil bulk density is a crucial indicator for assessing soil matter storage and soil quality. Due to the complexity of sampling soil bulk density, particularly in deeper layers, it is essential to study the spatial distribution patterns of soil bulk density and their [...] Read more.
Soil bulk density is a crucial indicator for assessing soil matter storage and soil quality. Due to the complexity of sampling soil bulk density, particularly in deeper layers, it is essential to study the spatial distribution patterns of soil bulk density and their influencing factors. To address the gap in large-scale studies of vertical (from surface to deeper layers) and horizontal (across a broad area) variations in soil bulk density in arid regions, this study focuses on Changji Prefecture, located in the central northern slope of the Tianshan Mountains and characterized by typical vertical zonation. By integrating classical statistics, geostatistics, and geographic information systems (GISs), this study investigates the spatial distribution patterns and driving factors of soil bulk density. The results indicate that soil bulk density in Changji Prefecture increases with soil depth, with significantly lower values in the surface layer than in deeper layers. Spatially, despite minimal variation in latitude, there is considerable elevation difference within the study area, with the lowest elevations in the central region. Soil bulk density exhibits a spatial distribution pattern of higher values in the northeast (desert areas) and lower values in the southwest (forest areas). The nugget effect in the surface layer (0–20 cm) is substantial at 44.9%, while the deeper layers (20–100 cm) show nugget effects below 25%, suggesting that the influence of both natural and anthropogenic factors on deep soil bulk density is limited and mainly affects the surface layer. Stepwise regression analysis indicates that among topographic factors, slope and elevation are the primary controls of spatial variability in soil bulk density across layers. This research demonstrates that, in arid regions, soil bulk density is influenced primarily by natural factors, with limited impact from human activities. These findings provide valuable data support and theoretical guidance for soil management, agricultural planning, and sustainable ecosystem development in arid regions. Full article
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<p>Maps for the location of the study area and distribution of sampling sites.</p>
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<p>Box maps of soil bulk density in different soil layers.</p>
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<p>Semi-variance maps for soil bulk density in the 0–20 cm (<b>a</b>), 20–40 cm (<b>b</b>), 40–60 cm (<b>c</b>), 60–80 cm (<b>d</b>) and 80–100 cm (<b>e</b>) layers in Changji prefecture. The boxfigure in the picture is the fitting parameter.</p>
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<p>Spatial distribution map of soil bulk density in 0–20 cm (<b>a</b>), 20–40 cm (<b>b</b>), 40–60 cm (<b>c</b>), 60–80 cm (<b>d</b>), and 80–100 cm (<b>e</b>) soil layers.</p>
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<p>Slope grading map (<b>a</b>). Elevation grading chart (<b>b</b>). Slope grade diagram (<b>c</b>). The black dots in the figure are sampling points.</p>
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<p>Relationship between soil bulk density and soil depth (<b>a</b>); the difference in soil bulk density in different soil layers under different slopes (<b>b</b>). Different capital letters indicated significant differences in slope type (<span class="html-italic">p</span> &lt; 0.05). Different lowercase letters indicate significant differences between different soil layers (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>The relationship between soil bulk density and soil depth (<b>a</b>); the difference in soil bulk density in different soil layers of shade slope and sunny slope (<b>b</b>). Different capital letters indicate significant differences in slope type (<span class="html-italic">p</span> &lt; 0.05). Different lowercase letters indicate significant differences between different soil layers (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>The relationship between soil bulk density and soil depth (<b>a</b>); the difference in soil bulk density in different soil layers under different elevation classifications (<b>b</b>). Different capital letters indicate significant differences in elevation type (<span class="html-italic">p</span> &lt; 0.05). Different lowercase letters indicate significant differences between different soil layers (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Soil bulk density of zonal soil and non-zonal soil in different soil layers. Different capital letters indicate significant differences in soil type (<span class="html-italic">p</span> &lt; 0.05). Different lowercase letters indicate significant differences between different soil layers (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Soil bulk density of cultivated land and non-cultivated land in different soil layers under zonal soil type (<b>a</b>); soil bulk density in different soil layers of cultivated land and non-cultivated land under non-zonal soil types (<b>b</b>). Different capital letters indicate significant differences in soil type (<span class="html-italic">p</span> &lt; 0.05). Different lowercase letters indicate significant differences between different soil layers (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Relationship between soil bulk density and soil depth (<b>a</b>); the difference in soil bulk density in different soil layers under different land use types (<b>b</b>). Different capital letters indicate significant differences in different land use types (<span class="html-italic">p</span> &lt; 0.05). Different lowercase letters indicate significant differences between different soil layers (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Annual average temperature and precipitation in Changji Prefecture (<b>a</b>) Annual average temperature in 2023; (<b>b</b>) Annual average precipitation map for 2023, with black points as sampling points.</p>
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23 pages, 21957 KiB  
Article
Terrain Analysis According to Multiscale Surface Roughness in the Taklimakan Desert
by Sebastiano Trevisani and Peter L. Guth
Land 2024, 13(11), 1843; https://doi.org/10.3390/land13111843 - 5 Nov 2024
Viewed by 737
Abstract
Surface roughness, interpreted in the wide sense of surface texture, is a generic term referring to a variety of aspects and scales of spatial variability of surfaces. The analysis of solid earth surface roughness is useful for understanding, characterizing, and monitoring geomorphic factors [...] Read more.
Surface roughness, interpreted in the wide sense of surface texture, is a generic term referring to a variety of aspects and scales of spatial variability of surfaces. The analysis of solid earth surface roughness is useful for understanding, characterizing, and monitoring geomorphic factors at multiple spatiotemporal scales. The different geomorphic features characterizing a landscape exhibit specific characteristics and scales of surface texture. The capability to selectively analyze specific roughness metrics at multiple spatial scales represents a key tool in geomorphometric analysis. This research presents a simplified geostatistical approach for the multiscale analysis of surface roughness, or of image texture in the case of images, that is highly informative and interpretable. The implemented approach is able to describe two main aspects of short-range surface roughness: omnidirectional roughness and roughness anisotropy. Adopting simple upscaling approaches, it is possible to perform a multiscale analysis of roughness. An overview of the information extraction potential of the approach is shown for the analysis of a portion of the Taklimakan desert (China) using a 30 m resolution DEM derived from the Copernicus Glo-30 DSM. The multiscale roughness indexes are used as input features for unsupervised and supervised learning tasks. The approach can be refined both from the perspective of the multiscale analysis as well as in relation to the surface roughness indexes considered. However, even in its present, simplified form, it can find direct applications in relation to multiple contexts and research topics. Full article
(This article belongs to the Section Land, Soil and Water)
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<p>Reprojected COP DEM (30 m resolution, UTM F44) of the area of interest overlaid on the hillshade.</p>
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<p>Sentinel-2 true color RGB image (bands 4, 3, and 2) of the study area, with the main dune morphologies labeled.</p>
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<p>Main dune morphologies in the study area, visualized using Sentinel-2 imagery (<b>a</b>), hillshade (<b>b</b>), and residual DEM (<b>c</b>). From top to bottom: network/transverse dunes, longitudinal and transverse dunes, and dome-shaped dunes.</p>
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<p>Mixed morphologies in the area of interest, visualized using Sentinel-2 imagery (<b>a</b>), hillshade (<b>b</b>), and residual DEM (<b>c</b>). From top to bottom: outcropping bedrock with shadow and linear dunes, fluvial morphology, and a flat area with minor dune morphologies.</p>
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<p>RA direction, where the RA strength is higher than 0.3, overlaid on the hillshade (<b>a</b>) and the residual DEM (<b>b</b>) calculated for level L2.</p>
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<p>Omnidirectional short-range roughness (m) for the different resolutions. Different color scales for each diagram.</p>
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<p>Roughness anisotropy strength at different resolutions. Different color scales for each diagram.</p>
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<p>RGB image (each band normalized) of 3 omnidirectional roughness indexes computed at different resolutions (B = L1; G = L2; R = L4). Despite the high correlation of the three indexes, they differentiate very well the morphological features of the area. For example, they markedly highlight the characteristic smoothness of interdune areas of the longitudinal dunes south of the mountain ridge.</p>
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<p>RGB image (each band normalized) of 3 anisotropy strength roughness indexes computed at different resolutions (B = L1; G = L4; R = L16). In the dune fields north of the mountains, long-wavelength anisotropic features prevail; in contrast, for the southern longitudinal dunes, shorter anisotropic features (L4) are highlighted.</p>
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<p>Landscape clustered according to multiscale surface roughness indexes. The cluster centers in terms of OR and RA are described in <a href="#land-13-01843-f011" class="html-fig">Figure 11</a>.</p>
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<p>Cluster centers of the 7 classes resulting from K-means clustering for OR and RA at the different levels.</p>
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<p>MRI clustering results in the area of the northern dune field, characterized by network and transverse dunes. Clustering results (<b>d</b>), Sentinel-2 imagery (<b>a</b>), hillshade (<b>b</b>), and residual DEM (<b>c</b>).</p>
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<p>MRI clustering results in the area of the southern longitudinal dune fields. Clustering results (<b>d</b>), Sentinel-2 imagery (<b>a</b>), hillshade (<b>b</b>), and residual DEM (<b>c</b>).</p>
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<p>MRI clustering results in the area with fluvial morphology, outcropping bedrock, and dome dune fields. Clustering results (<b>d</b>), Sentinel-2 imagery (<b>a</b>), hillshade (<b>b</b>), and residual DEM (<b>c</b>).</p>
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<p>Manual classification of crest lines (<b>a</b>) for large dunes using visual analysis of slope (<b>b</b>), profile curvature (<b>c</b>), and residual DEM (<b>d</b>). Crest lines are associated with high positive profile curvature, strongly positive residual DEM, and low slope. These locations are then located in areas in which the neighborhood is characterized by an abrupt variation in the selected geomorphometric derivatives.</p>
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<p>Probability of observing a crest obtained by means of RF considering the GDs integrated with the MRIs (<b>a</b>) and only the five GDs (<b>b</b>) to obtain details of the study area, which is located on the western mountain ridge. The RF model integrating the MRIs provides a more focused prediction of crest lines of large dunes. In (<b>c</b>), the prediction of the crest lines of the two RF models is compared. Pixels with a probability higher than 0.8 have been classified as crests. The transparent color is where both models predicted a not-crest pixel, green is where both models predicted a crest, and red and blue are where, respectively, only RF GDs and RF GDs + MRIs predicted a crest.</p>
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<p>Variables’ importance in the two RF models according to the mean decrease in the Gini index ((<b>a</b>), RF based on GDs; (<b>b</b>), RF based on GDs integrated with MRIs).</p>
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<p>Prediction of crest lines with the RF model based on GDs and MRIs of an unseen area ((<b>c</b>), green box) external to the one with reference data used for training and testing ((<b>c</b>), red box). The reference crest lines (<b>a</b>) have been manually digitized by means of visual analysis of the profile curvature, the residual DEM, and the slope; the predicted crest lines have been derived as crests of all of the pixels with a probability above 0.8. The predicted crest lines are compared with the reference data (<b>b</b>). Green pixels are correctly classified as crests; red and blue pixels are incorrectly classified, respectively, as crests and not crests.</p>
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16 pages, 3753 KiB  
Article
Microbial Biodiversity in Sediment from the Amuyo Ponds: Three Andean Hydrothermal Lagoons in Northern Chile
by Claudia Vilo, Francisca Fábrega, Víctor L. Campos and Benito Gómez-Silva
Microorganisms 2024, 12(11), 2238; https://doi.org/10.3390/microorganisms12112238 - 5 Nov 2024
Viewed by 893
Abstract
The Amuyo Ponds (APs) are a group of three brackish hydrothermal lagoons located at 3700 m above sea level in a pre-Andean setting in the Atacama Desert. Each pond shows a conspicuous green (GP), red (RP), or yellow (YP) coloration, and discharges water [...] Read more.
The Amuyo Ponds (APs) are a group of three brackish hydrothermal lagoons located at 3700 m above sea level in a pre-Andean setting in the Atacama Desert. Each pond shows a conspicuous green (GP), red (RP), or yellow (YP) coloration, and discharges water rich in arsenic and boron into the Caritaya River (Camarones Basin, northern Chile). Microorganisms are subjected to harsh environmental conditions in these ponds, and the microbial composition and diversity in the Amuyo Ponds’ sediments are unknown. The microbial life colonizing AP sediments was explored by metagenomics analyses, showing a diverse microbial life dominated by members of the bacterial domain, with nearly 800 bacterial genome sequences, and sequences associated with Archaea, Eukarya, and viruses. The genus Pseudomonas was more abundant in GP and YP sediments, while the genera Pseudomonas, Aeromonas, and Shewanella were enriched in RP sediments. Archaeal composition was similar in all sediments, and enriched with methanogens sequences from the Archaeoglobi and Halobacteria classes. Abundant fungi sequences were detected in all sediments from the phyla Blastocladiomycota and Ascomycota. We also report putative functional capabilities related to virulence and defense genes, the biosynthesis of secondary metabolites, and tolerance to arsenic. Thirteen bacterial and fourteen viral metagenome-assembled genomes were reconstructed and informed here. This work expands our knowledge on the richness of the microorganisms in the APs and open further studies on the ecology and genomics of this striking Andean geosite. Full article
(This article belongs to the Special Issue Microbial Life and Ecology in Extreme Environments)
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<p>Proximity of Amuyo Ponds to Caritaya River, Camarones Basin, Region of Arica and Parinacota in northern Chile. YP, RP, and GP correspond to yellow, red, and green ponds, respectively. (Image obtained from Google Earth Pro, accessed in April 2024).</p>
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<p>View of sediments at the edge of each Amuyo pond ((<b>A</b>): Red Pond; (<b>B</b>): Green Pond; (<b>C</b>): Yellow Pond).</p>
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<p>Relative abundance of classes (<b>A.1</b>,<b>B.1</b>,<b>C.1</b>) and genera (<b>A.2</b>,<b>B.2</b>,<b>C.2</b>) for bacteria, Archaea, and fungi, respectively, in sediments from Amuyo Ponds.</p>
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<p>Venn diagram showing the distribution of bacterial genera in Amuyo Ponds’ sediments. A total of 813 genera were detected by metagenomic analyses, while 17, 44, and 23 genera were assigned to Yellow, Green, and Red Ponds, respectively. The numbers of shared bacterial genera were 4, 9, and 29 between the Yellow and Red Ponds, Yellow and Green Ponds, and Green and Red Ponds, respectively.</p>
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<p>Relative abundance of virus genera in sediments from Amuyo Ponds.</p>
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<p>Putative bacterial genes in Amuyo Ponds’ sediments. (<b>A</b>): virulence and defense; (<b>B</b>): biosynthesis of secondary metabolites; and (<b>C</b>): arsenic resistance. Y axis indicates absolute abundance in (<b>A</b>) and relative abundance in (<b>B</b>,<b>C</b>).</p>
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<p>Putative bacterial gene clusters associated with arsenic resistance capabilities in metagenomic-assembled genomes from Amuyo Ponds’ sediments. (<b>A</b>): arsenic reductase bacterial gene clusters; (<b>B</b>): arsenic respiratory reductase gene cluster in Red Pond; (<b>C</b>): arsenite oxidase gene cluster.</p>
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<p>Putative bacterial gene clusters associated with arsenic resistance capabilities in metagenomic-assembled genomes from Amuyo Ponds’ sediments. (<b>A</b>): arsenic reductase bacterial gene clusters; (<b>B</b>): arsenic respiratory reductase gene cluster in Red Pond; (<b>C</b>): arsenite oxidase gene cluster.</p>
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29 pages, 4666 KiB  
Article
Land Suitability Assessment and Crop Water Requirements for Twenty Selected Crops in an Arid Land Environment
by Salman A. H. Selmy, Raimundo Jimenez-Ballesta, Dmitry E. Kucher, Ahmed S. A. Sayed, Francisco J. García-Navarro, Yujian Yang and Ibraheem A. H. Yousif
Agronomy 2024, 14(11), 2601; https://doi.org/10.3390/agronomy14112601 - 4 Nov 2024
Viewed by 1587
Abstract
Expanding projects to reclaim marginal land is the most effective way to reduce land use pressures in densely populated areas, such as Egypt’s Nile Valley and Delta; however, this requires careful, sustainable land use planning. This study assessed the agricultural potential of the [...] Read more.
Expanding projects to reclaim marginal land is the most effective way to reduce land use pressures in densely populated areas, such as Egypt’s Nile Valley and Delta; however, this requires careful, sustainable land use planning. This study assessed the agricultural potential of the El-Dabaa area in the northern region of the Western Desert, Egypt. It focused on assessing land capability, evaluating crop suitability, mapping soil variability, and calculating crop water requirements for twenty different crops. In this work, we evaluated land capability using the modified Storie index model and assessed soil suitability using the land use suitability evaluation tool (LUSET). We also calculated crop water requirements (CWRs) utilizing the FAO-CROPWAT 8.0 model. Additionally, we employed ArcGIS 10.8 to create spatial variability maps of soil properties, land capability classes, and suitability classes. Using a systematic sampling grid, 100 soil profiles were excavated to represent the spatial variability of the soil in the study area, and the physicochemical parameters of the soil samples were analyzed. The results indicated that the study area is primarily characterized by flat to gently sloping surfaces with deep soils. Furthermore, there are no restrictions on soil salinity or alkalinity, no sodicity hazards, and low CaCO3 levels. On the other hand, the soils in the study area are coarse textured and have low levels of CEC and organic matter (OM), which are the major soil limiting factors. As a result, the land with fair capability (Grade 3) accounted for the vast majority of the study area (87.3%), covering 30599.4 ha. Land with poor capability (Grade 4) accounted for 6.5% of the total area, while non-agricultural land (Grade 5) accounted for less than 1%. These findings revealed that S2 and S3 are the dominant soil suitability classes for all the studied crops, indicating moderate and marginal soil suitabilities. Furthermore, there were only a few soil proportions classified as unsuitable (N class) for fruit crops, maize, and groundnuts. Among the crops studied, barley, wheat, sorghum, alfalfa, olives, citrus, potatoes, onions, tomatoes, sunflowers, safflowers, and soybeans are the most suitable for cultivation in the study area. The reference evapotranspiration (ETo) varied between 2.6 and 5.9 mm day−1, with higher rates observed in the summer months and lower rates in the winter months. Therefore, the increase in summer ETo rates and the decrease in winter ones result in higher CWRs during the summer season and lower ones during the winter season. The CWRs for the crops we studied ranged from 183.9 to 1644.8 mm season−1. These research findings suggest that the study area is suitable for cultivating a variety of crops. Crop production in the study area can be improved by adding organic matter to the soil, choosing drought-resistant crop varieties, employing effective irrigation systems, and implementing proper management practices. This study also provides valuable information for land managers to identify physical constraints and management needs for sustainable crop production. Furthermore, it offers valuable insights to aid investors, farmers, and governments in making informed decisions for agricultural development in the study region and similar arid and semiarid regions worldwide. Full article
(This article belongs to the Special Issue Soil Health and Properties in a Changing Environment)
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<p>Location map of the study area.</p>
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<p>Topography and geology of the study area: (<b>a</b>) digital elevation model (DEM), (<b>b</b>) slope map, (<b>c</b>) aspect map, and (<b>d</b>) geological map.</p>
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<p>Soil sampling sites across the study area.</p>
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<p>Spatial distribution maps of soil properties: (<b>a</b>) soil depth, (<b>b</b>) sand fraction, (<b>c</b>) cation exchange capacity (CEC), and (<b>d</b>) CaCO<sub>3</sub>.</p>
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<p>Spatial distribution maps of soil properties: (<b>a</b>) soil pH, (<b>b</b>) soil salinity, (<b>c</b>) exchangeable sodium percentage (ESP), and (<b>d</b>) sodium adsorption ratio (SAR).</p>
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<p>Spatial distribution map of land capability classes.</p>
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<p>Spatial distribution maps of land suitability classes for the selected field crops.</p>
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<p>Spatial distribution maps of land suitability classes for the selected fruit crops.</p>
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<p>Spatial distribution maps of land suitability classes for the selected oil crops.</p>
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<p>Spatial distribution maps of land suitability classes for the selected vegetable crops.</p>
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