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Search Results (1,009)

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Keywords = 3D MRI

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23 pages, 1078 KiB  
Article
Enhanced U-Net for Infant Brain MRI Segmentation: A (2+1)D Convolutional Approach
by Lehel Dénes-Fazakas, Levente Kovács, György Eigner and László Szilágyi
Sensors 2025, 25(5), 1531; https://doi.org/10.3390/s25051531 - 28 Feb 2025
Viewed by 320
Abstract
Background: Infant brain tissue segmentation from MRI data is a critical task in medical imaging, particularly challenging due to the evolving nature of tissue contrasts in the early months of life. The difficulty increases as gray matter (GM) and white matter (WM) intensities [...] Read more.
Background: Infant brain tissue segmentation from MRI data is a critical task in medical imaging, particularly challenging due to the evolving nature of tissue contrasts in the early months of life. The difficulty increases as gray matter (GM) and white matter (WM) intensities converge, making accurate segmentation challenging. This study aims to develop an improved U-net-based model to enhance the precision of automatic segmentation of cerebro-spinal fluid (CSF), GM, and WM in 10 infant brain MRIs using the iSeg-2017 dataset. Methods: The proposed method utilizes a U-net architecture with (2+1)Dconvolutional layers and skip connections. Preprocessing includes intensity normalization using histogram alignment to standardize MRI data across different records. The model was trained on the iSeg-2017 dataset, which comprises T1-weighted and T2-weighted MRI data from ten infant subjects. Cross-validation was performed to evaluate the model’s segmentation performance. Results: The model achieved an average accuracy of 92.2%, improving on previous methods by 0.7%. Sensitivity, precision, and Dice similarity scores were used to evaluate the performance, showing high levels of accuracy across different tissue types. The model demonstrated a slight bias toward misclassifying GM and WM, indicating areas for potential improvement. Conclusions: The results suggest that the U-net architecture is highly effective in segmenting infant brain tissues from MRI data. Future work will explore enhancements such as attention mechanisms and dual-network processing for further improving segmentation accuracy. Full article
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<p>2 plus 1 dimensional convolution.</p>
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<p>Workflow of our U-net approach. The input is a 3-dimensional MRI scan. This image is passed to our U-net which processes it using (2+1)D convolution. Then, the segmented images are obtained at the output of the last layer. Since all images are segmented output.</p>
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<p>Structure of an encoder block.</p>
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<p>The proposed 2+1D U-net architecture.</p>
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<p>Structure of the bridge part.</p>
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<p>Structure of a decoder block.</p>
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<p>Boxplot of different segmentation benchmark metrics.</p>
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<p>Benchmark values obtained for individual records and tissue types in panels (<b>a</b>–<b>c</b>); accuracy rates obtained for individual records in panel (<b>d</b>).</p>
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<p>All slices of a segmented brain. The three shades of green from dark to light represent the correctly segmented pixels of the three main tissue types: CSF, GM, and WM, respectively, while red color indicates misclassified pixels.</p>
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12 pages, 807 KiB  
Article
Association Between Lipoprotein(a) and Arterial Stiffness in Young Adults with Familial Hypercholesterolemia
by Sibbeliene E. van den Bosch, Lotte M. de Boer, Alma Revers, Eric M. Schrauben, Pim van Ooij, Aart J. Nederveen, Willemijn E. Corpeleijn, John J.P. Kastelein, Albert Wiegman and Barbara A. Hutten
J. Clin. Med. 2025, 14(5), 1611; https://doi.org/10.3390/jcm14051611 - 27 Feb 2025
Viewed by 118
Abstract
Background and Aims: Elevated lipoprotein(a) [Lp(a)] and familial hypercholesterolemia (FH) are both inherited dyslipidemias that are independently associated with cardiovascular disease. Surrogate markers to assess signs of atherosclerosis, such as arterial stiffness, might be useful to evaluate the cardiovascular risk in young [...] Read more.
Background and Aims: Elevated lipoprotein(a) [Lp(a)] and familial hypercholesterolemia (FH) are both inherited dyslipidemias that are independently associated with cardiovascular disease. Surrogate markers to assess signs of atherosclerosis, such as arterial stiffness, might be useful to evaluate the cardiovascular risk in young patients. The aim of this study is to evaluate the contribution of Lp(a) to arterial stiffness, as measured by carotid pulse wave velocity (cPWV) in young adults with FH. Methods: For this cross-sectional study, 214 children with FH who participated in a randomized controlled trial between 1997 and 1999 on the efficacy and safety of pravastatin were eligible. After 20 years, these patients were invited for a hospital visit, including cPWV assessment (by 4D flow MRI) and Lp(a) measurement. Linear mixed-effects models were used to evaluate the association between Lp(a) and cPWV. Results: We included 143 patients (mean [standard deviation] age: 31.8 [3.2] years) from 108 families. Median (interquartile range) cPWV was 1.62 (1.31–2.06) m/s. Both the unadjusted (ß = −0.0014 m/s per 1 mg/dL increase in Lp(a), 95% CI: −0.0052 to 0.0023, p = 0.455) and adjusted model (ß = −0.0005 m/s per 1 mg/dL increase in Lp(a), 95% CI: −0.0042 to 0.0032, p = 0.785) showed no significant association between Lp(a) and cPWV. Conclusions: Our findings indicate that Lp(a) levels are not associated with carotid arterial stiffness in young adults with FH. Possibly, High Lp(a) might cause atherosclerosis by mechanisms beyond arterial stiffness in young adults. Other surrogate markers of early signs of atherosclerosis may be more suitable to evaluate the Lp(a)-mediated contribution to atherosclerosis in young FH patients. Full article
(This article belongs to the Section Cardiovascular Medicine)
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<p>Illustration of the measurement of the carotid pulse wave velocity in a single patient using the open-source Amsterdam UMC FlowProcessingTool Matlab-based app (Matlab<sup>®</sup> version 2021a) (11, 16). (<b>A</b>) 3D segmentation of the vessels in the neck. (<b>B</b>) Identification of right carotid with corresponding centerlines. (<b>C</b>) Total flow (mL/cycle) visualization in the right carotid. (<b>D</b>) Flow waveforms (mL/s) along corresponding points, with clear delays in more distal points. (<b>E</b>) Calculation of carotid PWV (m/s), using a linear fit to distance versus waveform delays. PWV: pulse wave velocity.</p>
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<p>Median lipoprotein(a) levels in patients with levels below and above 50 mg/dL. PWV: pulse wave velocity; m/s: meter per second; mg/dL: milligram per deciliter.</p>
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12 pages, 2584 KiB  
Article
Clinical, Laboratory, and Imaging Features Associated with Arginine Vasopressin Deficiency (Central Diabetes Insipidus) in Erdheim–Chester Disease (ECD)
by Sonal Vaid, Juvianee Estrada-Veras, William A. Gahl, Nicholas Patronas, Rahul H. Dave, Fady Hannah-Shmouni, Kevin O’Brien and Skand Shekhar
Cancers 2025, 17(5), 824; https://doi.org/10.3390/cancers17050824 - 27 Feb 2025
Viewed by 190
Abstract
Purpose: Erdheim–Chester disease (ECD) is an L Group Langerhans histiocytosis associated with pathogenic variants within the MAPK pathways, most commonly the BRAF gene. We analyzed prevalence, genetic, biochemical, and pituitary imaging features associated with arginine vasopressin deficiency (AVP-D), one of the most common [...] Read more.
Purpose: Erdheim–Chester disease (ECD) is an L Group Langerhans histiocytosis associated with pathogenic variants within the MAPK pathways, most commonly the BRAF gene. We analyzed prevalence, genetic, biochemical, and pituitary imaging features associated with arginine vasopressin deficiency (AVP-D), one of the most common endocrinopathies in ECD. Methods: A cross-sectional descriptive study of 61 subjects with ECD was conducted at a clinical research center from January 2011 to December 2018, with molecular genetics, baseline biochemical and pituitary endocrine function studies, and dedicated pituitary MRI (or CT) studies. AVP-D and anterior pituitary endocrinopathies (hypothyroidism, hypogonadism, adrenal insufficiency and panhypopituitarism) were assessed. Students’ t-tests, nonparametric tests, Fisher’s exact tests, and logistic regression were employed for analysis. Results: In total, 22 out of 61 subjects (36%; 19 males and 3 females) had AVP-D; 18 subjects with AVP-D were in active treatment with desmopressin. Those with versus without AVP-D were younger [mean (±SD): 50.00 (±10.45) vs. 56.72 (±10.45) years], had higher prevalence of BRAF V600E pathogenic variants [68% vs. 43%], lower IGF-1 [mean (±SD): 137.05 (±67.97) vs. 175.92 (±61.89) ng/mL], lower urine osmolality [416.00 (250.00–690.00) vs. 644.50 (538.75–757.75)) mOsm/kg], and a higher burden of central hypogonadism [81.82% vs. 36.00%], central hypothyroidism [23% vs. 2.5%], panhypopituitarism [41% vs. 0%], anterior pituitary endocrine deficits, absent posterior pituitary bright spots [63.64% vs. 20.51%], and abnormal pituitary imaging. In adjusted models, [OR (95%CI)] BRAF V600E mutation [7.38 (1.84–39.01)], central hypogonadism [6.193 (1.44–34.80)], primary hypothyroidism [13.89 (1.401–406.5)], absent posterior pituitary bright spot [12.84 (3.275–65.04)], and abnormal pituitary imaging [10.60 (2.844–48.29)] were associated with higher odds of having AVP-D. Conclusions: AVP-D is common in ECD and accompanied by a higher burden of pituitary endocrinopathies, BRAF V600E pathogenic variants, abnormal pituitary imaging, and absent posterior pituitary bright spots. Full article
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<p>Comparisons of urine and serum osmolality between those with and without AVP-D. Urine osmolality was higher in those without AVP-D compared to those with AVP-D as denoted by double asterisks (<span class="html-italic">p</span> &lt; 0.01).</p>
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<p>T1-weighted MRI scans of subjects with AVP-D. (<b>A</b>) (coronal) and (<b>B</b>) (sagittal): Loss of posterior pituitary bright spot in a subject with AVP-D. (<b>C</b>,<b>D</b>): Suprasellar mass in a subject with DI. (<b>E</b>,<b>F</b>): Thickened pituitary stalk at hypothalamus in a subject with AVP-D and loss of posterior pituitary bright spot. Red arrows point to the lesion.</p>
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19 pages, 1549 KiB  
Article
Clinical Impact of MRI-Guided Intracavitary–Interstitial Brachytherapy in the Curative Management of Advanced-Stage Cervical Cancer
by Antje Wark, Laura Hüfner, Eva Meixner, Jan Oelmann, Laila König, Simon Höne, Katja Lindel, Jürgen Debus and Nathalie Arians
Curr. Oncol. 2025, 32(3), 136; https://doi.org/10.3390/curroncol32030136 - 26 Feb 2025
Viewed by 217
Abstract
This study investigates the clinical efficacy of MRI-based adaptive brachytherapy (IGABT) using combined intracavitary and interstitial techniques in the curative treatment of patients with advanced cervical cancer (LACC). A retrospective analysis was conducted on 149 LACC patients treated at a single center. The [...] Read more.
This study investigates the clinical efficacy of MRI-based adaptive brachytherapy (IGABT) using combined intracavitary and interstitial techniques in the curative treatment of patients with advanced cervical cancer (LACC). A retrospective analysis was conducted on 149 LACC patients treated at a single center. The therapeutic protocol included intensity-modulated external beam radiotherapy (IMRT) and IGABT. Dosimetric parameters were evaluated for relevance for local control (LC), progression-free survival (PFS), and overall survival (OS) using Kaplan–Meier estimation, Cox regression, and log-rank test. Patients predominantly presented with stage III/IV tumors (81%, FIGO 2018). The median high-risk clinical target volume (hrCTV) was 34 cm3, with a median D90% dose of 88.9 GyEQD2. At 24 months, OS, PFS, and LC rates were 86%, 57%, and 81%, respectively. FIGO stage, tumor volume, and histology were significant predictors of PFS. Higher total hrCTV doses were strongly correlated with improved LC and PFS, emphasizing the importance of precise dosimetric optimization in IGABT and confirming the critical role of IGABT in achieving very good LC rates for LACC. The reported LC rates are comparable to landmark studies, such as INTERLACE and KEYNOTE-A18. This study validates the effectiveness of MRI-guided IGABT in enhancing local tumor control in advanced-stage cervical cancer while providing insights into the prognostic implications of dosimetric parameters such as hrCTV and point A. Future research should address the persistent challenge of distant metastases by exploring the integration of novel systemic treatment options. Full article
(This article belongs to the Special Issue Clinical Management of Cervical Cancer)
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<p>Distribution of staging according to the FIGO 2018 classification for cervical cancer patients (n = 149). The bars represent the absolute number of patients and the corresponding percentage for each stage, highlighting the prevalence of each stage within the cohort.</p>
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<p>Kaplan–Meier estimates of overall survival in months since the end of treatment, stratified by FIGO stages I and II versus stages III and IV (<span class="html-italic">p</span> = 0.202). The number of patients at risk is stated below.</p>
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<p>Kaplan–Meier estimates of local-control rate in months since the end of treatment, stratified by FIGO stages I and II versus stages III and IV (<span class="html-italic">p</span> = 0.311). The number of patients at risk is stated below.</p>
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<p>Kaplan–Meier estimates of distant progression-free survival in months since the end of treatment, stratified by FIGO stages I and II versus stages III and IV (<span class="html-italic">p</span> = 0.027). The number of patients at risk is stated below.</p>
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<p>Kaplan–Meier estimates of progression-free survival in months since the end of treatment, stratified by FIGO stages I and II versus stages III and IV (<span class="html-italic">p</span> = 0.023). The number of patients at risk is stated below.</p>
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<p>Kaplan–Meier estimates of progression-free survival in months since the end of treatment, stratified by histology: Squamous cell carcinoma, Adenocarcinoma, Neuroendocrine carcinoma (<span class="html-italic">p</span> = 0.002). The number of patients at risk is stated below.</p>
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11 pages, 1808 KiB  
Article
The Use of Mixed Reality in Training Trainers—A Single-Centre Study
by Prabhjot Singh Malhotra, Swati Jain, Silvia Stefanova Karcheva and Adel Helmy
Appl. Sci. 2025, 15(5), 2403; https://doi.org/10.3390/app15052403 - 24 Feb 2025
Viewed by 238
Abstract
There has been an exponential increase in the utility of mixed-reality (MR) software as a tool for medical education and training due to its immersive and interactive capabilities. Whilst it has been progressively used in surgical training or in simulation training, there is [...] Read more.
There has been an exponential increase in the utility of mixed-reality (MR) software as a tool for medical education and training due to its immersive and interactive capabilities. Whilst it has been progressively used in surgical training or in simulation training, there is a significant lack of using it to train the “trainers”. In this single-centre prospective study, MR technology was used to deliver a dedicated 2-h tutorial in surgical training to two cohorts of postgraduate students attending a course on clinical research and education. The Microsoft HoloLens 2 was used to run mixed-reality software capable of rendering CT scan images of a normal brain, an MRI of a large meningioma, an abdominal–pelvic CT scan, and a 3D-printed cranioplasty scan. The participants were then asked to complete a post-usage questionnaire in an anonymous manner. Fourteen participants attended the teaching session and completed the post-usage questionnaire. Scores obtained on the User Experience Questionnaire (UEQ) revealed that MR technology is rated “Excellent” on quality aspects for Attractiveness, Stimulation and Novelty. This prospective study provides insight into incorporating MR in training the trainers, allowing them to be equipped with the technology to imparting education to the next generation across various disciplines. Full article
(This article belongs to the Special Issue Recent Advances and Application of Virtual Reality)
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<p>Bar chart distribution of preferred methods of teaching.</p>
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<p>A pie chart representing the pre-existing experience of users interacting with MR-based devices.</p>
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<p>The UEQ results were collected across the participants. The mean value for each item assessing the quality has been plotted. The colour legend has been displayed below the figure. The colour coding refers to qualities which were grouped together under an overall quality. For example, attractiveness of the device was calculated using annoying/enjoyable, bad/good, unlikeable/pleasing, unattractive/attractive, and unfriendly/friendly.</p>
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<p>Mean values for items grouped under Attractiveness, Perspicuity, Efficiency, Dependability, Stimulation and Novelty.</p>
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<p>(<b>A</b>) Radar Chart depicting the distribution of median scores across various faculties evaluating the use of HoloLens MR Device in anatomy demonstration and teaching. (<b>B</b>) Radar Chart depicting the distribution of median scores across various faculties evaluating the use of HoloLens MR Device in anatomy demonstration and teaching.</p>
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17 pages, 2164 KiB  
Article
Development of Clinical-Radiomics Nomogram for Predicting Post-Surgery Functional Improvement in High-Grade Glioma Patients
by Tamara Ius, Maurizio Polano, Michele Dal Bo, Daniele Bagatto, Valeria Bertani, Davide Gentilini, Giuseppe Lombardi, Serena D’agostini, Miran Skrap and Giuseppe Toffoli
Cancers 2025, 17(5), 758; https://doi.org/10.3390/cancers17050758 - 23 Feb 2025
Viewed by 307
Abstract
Introduction: Glioma Grade 4 (GG4) tumors, which include both IDH-mutated and IDH wild-type astrocytomas, are the most prevalent and aggressive form of primary brain tumor. Radiomics is gaining ground in neuro-oncology. The integration of this data into machine learning models has the potential [...] Read more.
Introduction: Glioma Grade 4 (GG4) tumors, which include both IDH-mutated and IDH wild-type astrocytomas, are the most prevalent and aggressive form of primary brain tumor. Radiomics is gaining ground in neuro-oncology. The integration of this data into machine learning models has the potential to improve the accuracy of prognostic models for GG4 patients. Karnofsky Performance Status (KPS), an established preoperative prognostic factor for survival, is commonly used in these patients. In this study, we developed a nomogram to identify patients with improved functional performance as indicated by an increase in KPS after surgery by analyzing radiomic features from preoperative 3D MRI scans. Methods: Quantitative imaging features were extracted from the -3D T1 GRE sequence of 157 patients from a single center and were used to develop the machine learning (ML) model. To improve applicability and create a nomogram, multivariable logistic regression analysis was performed to build a model incorporating clinical characteristics and radiomics features. Results: We labeled 55 cases in which KPS was improved after surgery (35%, KPS-flag = 1). The resulting model was evaluated according to test series results. The best model was obtained by XGBoost using the features extracted by pyradiomics, with a Matthew coefficient score (MCC) of 0.339 (95% CI: 0.330–0.3483) in cross-validation. The out-of-sample evaluation on the test set yielded an MCC of 0.302. A nomogram evaluating the improvement of KPS post-surgery was built based on statistically significant variables from multivariate logistic regression including clinical and radiomics data (c-index = 0.760, test set). Conclusions: MRI radiomic analysis represents a powerful tool to predict postoperative functional outcomes, as evaluated by KPS. Full article
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<p>A Sankey diagram to visualize the flow and relationships between categorical variables created based on the relationship among localization, EOR, and flag to predict KPS improvement. The width of the flow represents the proportion of patients moving from one category to another. Of note, GG4 cases labeled with a KPS-flag = 1 showed an improvement of performance status by a heterogeneity of localization, side, and different rates of EOR. For these reasons, we evaluate the informative effect of radiomics data to classify that condition (<a href="#cancers-17-00758-f001" class="html-fig">Figure 1</a>).</p>
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<p>A unsupervised clustering heatmap of the radiomic features extracted from 157 GG4 cases using PyRadiomics. Each row represents a radiomic feature, while each column corresponds to a patient case. The features are standardized using z-score normalization, and hierarchical clustering was performed using Euclidean distance and Ward’s linkage method. The top annotation bar includes key clinical and molecular features such as FLAG status, IDH mutation status, MGMT methylation status, tumor laterality, location, and additional clinical data. This visualization highlights potential patterns and subgroup structures within the radiological landscape of the GG4 cases.</p>
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<p>The top 20 feature variables and their importance in the FLAG-KPS model. The figure illustrates the top 20 most influential features identified by the FLAG-KPS model, ranked by their importance scores. The importance was determined using the average SHAP (Shapley Additive Explanations) values over 1000 bootstrap model iterations. Higher SHAP values indicate greater influence on model predictions and provide insight into the key factors driving the model’s decision-making process.</p>
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<p>A comparison of the top 20 radiomic features selected by the XGBoost model with the Wilcoxon signed-rank test between the GG4 patient cohort and the IDH wild-type (IDHwt) patient subgroup classified according to the 2021 WHO guidelines. The Wilcoxon signed-rank test is used to detect statistically significant differences in the distribution of radiomic features between these groups identified by the xgboost model. The results are presented in a log10-transformed <span class="html-italic">p</span>-value plot highlighting the most important features based on their statistical significance. This analysis sheds light on the radiomic features that differentiate the GG4 cases from the IDHwt subgroup and can thus contribute to classification and prognostic assessment.</p>
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<p>Receiver Operating Characteristic (ROC) curve of the clinical-radiomics nomogram model. The ROC curve illustrates the model’s ability to distinguish between outcome classes by plotting the true positive rate (sensitivity) against the false positive rate (1—specificity) across different probability thresholds. The area under the curve (AUC) was 0.823 (95% CI: 66.1–96.41%), computed using 100 stratified bootstrap iterations. A higher AUC indicates stronger discriminative performance, highlighting the model’s effectiveness in clinical decision-making and predictive accuracy.</p>
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<p>A clinical-radiomics nomogram. The clinical-radiomics nomogram developed for the GG4 cohort by integrating a multivariate logistic regression model constructed using the rms package. This nomogram combines both clinical and radiomic features to provide a quantitative tool for individual risk assessment and outcome prediction. By assigning a weighted contribution to each predictor, the model facilitates the intuitive interpretation of complex relationships among the variables. The use of the rms package ensures robust model calibration, validation, and visualization and increases the reliability and clinical applicability of the nomogram.</p>
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15 pages, 1678 KiB  
Article
The Brain That Understands Diversity: A Pilot Study Focusing on the Triple Network
by Taiko Otsuka, Keisuke Kokubun, Maya Okamoto and Yoshinori Yamakawa
Brain Sci. 2025, 15(3), 233; https://doi.org/10.3390/brainsci15030233 - 23 Feb 2025
Viewed by 299
Abstract
Background/Objectives: Interest in diversity is growing worldwide. Today, an understanding and social acceptance of diverse people is becoming increasingly important. Therefore, in this study, we aimed to clarify the relationship between an individual’s gray matter volume (GMV), which is thought to reflect [...] Read more.
Background/Objectives: Interest in diversity is growing worldwide. Today, an understanding and social acceptance of diverse people is becoming increasingly important. Therefore, in this study, we aimed to clarify the relationship between an individual’s gray matter volume (GMV), which is thought to reflect brain health, and their understanding of diversity (gender, sexuality (LGBTQ), and origin). Methods: GMV was determined as the value of the Gray Matter Brain Healthcare Quotient (GM-BHQ) based on MRI image analysis. Meanwhile, participants’ understanding and acceptance of diversity was calculated based on their answers to the psychological questions included in the World Values Survey Wave 7 (WVS7). Results: Our analysis indicated that, in the group of participants with the highest understanding of diversity (PHUD. n = 11), not only the GMV at the whole brain level (t = 2.587, p = 0.027, Cohen’s d = 0.780) but also the GMV of the central executive network (CEN: t = 2.700, p= 0.022, Cohen’s d = 0.814) and saliency network (SN: t = 3.100, p = 0.011, Cohen’s d = 0.935) were shown to be significantly higher than the theoretical value estimated from sex, age, and BMI at the 5% level. In addition, the GMV of the default mode network (DMN: t = 2.063, p = 0.066, Cohen’s d = 0.622) was also higher than the theoretical value at the 10% level. Meanwhile, in the group of others (n = 10), there was no significant difference from the theoretical value. These differences between PHUD and others were also observed when comparing the two with and without controlling for educational and occupational covariates at the 5% or 10% levels. Conclusions: These results suggest that understanding diversity requires a healthy brain, centered on three networks that govern rational judgment, emotion regulation, other-awareness, self-awareness, and the valuing of actions. This is the first study to show that brain structure is related to an understanding and acceptance of the diversity of people. Full article
(This article belongs to the Section Behavioral Neuroscience)
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<p>Triple network model. Retrieved from: <a href="https://prtimes.jp/main/html/rd/p/000000002.000063078.html" target="_blank">https://prtimes.jp/main/html/rd/p/000000002.000063078.html</a> (accessed on 21 September 2024).</p>
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<p>Frequency of “positive understanding of gender equality” by score.</p>
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<p>Frequency of “positive feelings towards LGBTQ” by score.</p>
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<p>Frequency of “positive feelings towards people of a different origin” by score.</p>
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<p>Difference in GMV from baseline by region for PHUD. <sup>1</sup> One-sample <span class="html-italic">t</span>-test to confirm whether the mean value of ΔGMV was greater than zero. <sup>2</sup> Independent-sample <span class="html-italic">t</span>-test to confirm whether the mean value of ΔGMV was different between PHUD and others. ** <span class="html-italic">p</span> &lt; 0.01; * <span class="html-italic">p</span> &lt; 0.05; <sup>†</sup> <span class="html-italic">p</span> &lt; 0.10. PHUD: participants with the highest understanding of diversity. Error bars represent standard error.</p>
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11 pages, 7236 KiB  
Article
Addressing Multi-Center Variability in Radiomic Analysis: A Comparative Study of Image Acquisition Methods Across Two 3T MRI Scanners
by Claudia Tocilă-Mătășel, Sorin Marian Dudea and Gheorghe Iana
Diagnostics 2025, 15(4), 485; https://doi.org/10.3390/diagnostics15040485 - 17 Feb 2025
Viewed by 281
Abstract
Background: Radiomics has become a valuable tool in medical imaging, but its clinical use is limited by data variability and a lack of reproducibility between centers. This study aims to assess the differences between two scanners and provide guidance on image acquisition [...] Read more.
Background: Radiomics has become a valuable tool in medical imaging, but its clinical use is limited by data variability and a lack of reproducibility between centers. This study aims to assess the differences between two scanners and provide guidance on image acquisition methods to reduce variations between images obtained from different centers. Methods: This study utilized medical images obtained in two different imaging centers, with two different 3T MRI scanners. For each scanner, 3D T2 FLAIR sequences were acquired in two forms: the raw and the clinical practice images typically used in diagnostic workflows. The differences between images were analyzed regarding resolution, SNR, CNR, and radiomic features. To facilitate comparison, bias field correction was applied, and the data were standardized to the same scale using Z-score normalization. Descriptive and inferential statistical methods were used to analyze the data. Results: The results show that there are significant differences between centers. Filtering and zero-padding significantly influence the resolution, SNR, CNR values, and radiomics features. Applying Z-score normalization has resolved variations in features sensitive to scale differences, but features reflecting dispersion and extreme values remain significantly different between scanners. Some feature differences may be resolved by analyzing the raw images in both centers. Conclusions: Variations arise due to different acquisition parameters and the differing quality and sensitivity of the equipment. In multi-center studies, acquiring raw images and then applying standardized post-processing methods across all images can enhance the robustness of results. This approach minimizes technical differences, and preserves the integrity of the information, reflecting a more accurate representation of reality and contributing to more reliable and reproducible findings. Full article
(This article belongs to the Special Issue Recent Advances in Radiomics in Medical Imaging)
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<p>The effect of interpolation on image resolution.</p>
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<p>ROI selected for SNR calculation.</p>
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<p>ROI selected for CNR calculation.</p>
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<p>First-order features that still show significant differences between scanners after normalization.</p>
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<p>Second-order features extracted from the GLDM matrix that still show significant differences between scanners after normalization.</p>
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<p>Second-order features extracted from the GLRLM matrix that still show significant differences between scanners after normalization.</p>
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<p>Second-order features extracted from the GLSZM matrix that still show significant differences between scanners after normalization.</p>
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17 pages, 3642 KiB  
Article
Mitochondrial HMG-CoA Synthase Deficiency in Vietnamese Patients
by Khanh Ngoc Nguyen, Tran Minh Dien, Thi Bich Ngoc Can, Bui Phuong Thao, Tien Son Do, Thi Kim Giang Dang, Ngoc Lan Nguyen, Van Khanh Tran, Thuy Thu Nguyen, Tran Thi Quynh Trang, Le Thi Phuong, Phan Long Nguyen, Thinh Huy Tran, Nguyen Huu Tu and Chi Dung Vu
Int. J. Mol. Sci. 2025, 26(4), 1644; https://doi.org/10.3390/ijms26041644 - 14 Feb 2025
Viewed by 329
Abstract
Mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase deficiency (HMGCS2D) is a rare metabolic disorder that impairs the body’s ability to produce ketone bodies and regulate energy metabolism. Diagnosing HMGCS2D is challenging because patients typically remain asymptomatic unless they experience fasting or illness. Due to the absence of [...] Read more.
Mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase deficiency (HMGCS2D) is a rare metabolic disorder that impairs the body’s ability to produce ketone bodies and regulate energy metabolism. Diagnosing HMGCS2D is challenging because patients typically remain asymptomatic unless they experience fasting or illness. Due to the absence of reliable biochemical markers, genetic testing has become the definitive method for diagnosing HMGCS2D. This study included 19 patients from 14 unrelated families diagnosed with HMGCS2D in our department between October 2018 and October 2024. The clinical presentations, biochemical findings, molecular characteristics, and management strategies were systematically summarized and analyzed. Of the 19 cases studied, 16 were symptomatic, and 3 were asymptomatic. The onset of the first acute episode occurred between 10 days and 28 months of age. Triggers for the initial crisis in the symptomatic cases included poor feeding (93.8%), vomiting (56.3%), diarrhea (25.0%), and fever (18.8%). Clinical manifestations during the first episode were lethargy/coma (81.3%), rapid breathing (68.8%), hepatomegaly (56.3%), shock (37.5%), and seizures (18.8%). The biochemical abnormalities observed included elevated plasma transaminases (100%), metabolic acidosis (75%), hypoglycemia (56.3%), and elevated plasma ammonia levels (31.3%). Additionally, low free carnitine levels were found in seven cases, elevated C2 levels were found in one case, dicarboxylic aciduria was found in two cases, and ketonuria was found in two cases. Abnormal brain MRI findings were detected in three patients. Genetic analysis revealed seven HMGCS2 gene variants across the 19 cases. Notably, a novel variant, c.407A>T (p.D136V), was identified and has not been reported in any existing databases. Two common variants, c.559+1G>A and c.1090T>A (p.F364I), were present in 11 out of 19 cases (57.9%) and 10 out of 19 cases (55.5%), respectively. The implementation of a high glucose infusion and proactive management strategies—such as preventing prolonged fasting and providing enteral carbohydrate/glucose infusion during illness—effectively reduced the rate of acute relapses following accurate diagnosis. Currently, all 19 patients are alive, with ages ranging from 5 months to 14 years, and exhibit normal physical development. To the best of our knowledge, this study represents the first reported cases of HMGCS2D in Vietnamese patients. Our findings contribute to a broader understanding of the clinical phenotype and expand the known spectrum of HMGCS2 gene variants, enhancing current knowledge of this rare metabolic disorder. Full article
(This article belongs to the Special Issue Genes and Human Diseases 2.0)
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<p>Magnetic resonance imaging (MRI) of three Vietnamese cases with mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase deficiency (HMGCS2D). (<b>a</b>) P3: coronal FLAIR, axial T1-weighted, and axial T2-weighted images showed symmetric hyperintensities involving both the head of caudate nuclei and putamina. (<b>b</b>) P9: coronal FLAIR image showed bilateral hyperintensities of periventricular deep white matter and left parietal cortex; axial T1-weighted post-gadolinium image showed enhancement of the subcortical area in the left frontal and parietal lobe; axial T2-weighted image showed bilateral symmetric hyperintensities involving putamen. (<b>c</b>) P12: axial T2-weighted MR image showing bilateral ventricular dilatation and the widening of temporal subarachnoid space predominant on the left side.</p>
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<p>Scheme of the distribution of <span class="html-italic">HMGCS2</span> variants in 19 Vietnamese patients with mitochondrial HMG-CoA synthase deficiency.</p>
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<p>Pedigree and Sanger sequencing chromatograms of <span class="html-italic">HMGCS2</span> variants in the three families of the study. Rectangles and circles represent males and females; “-/” represents the normal allele; arrows indicate the probands; partially filled symbols indicate carrier parents; the filled symbol represents affected individuals; Het, heterozygous; WT, wild type. Patient P18 inherited c.334C&gt;T (p.R112W) from her father and c.591+1G&gt;A from her mother (<b>a</b>). Patients P10 and P11 inherited c.407A&gt;T (p.D136V) from their father and c.850+1G&gt;A from their mother (<b>b</b>). Patients P13 and P14 inherited c.1090T&gt;A (p.F364I) from their father and c.1502G&gt;C (p.R501P) from their mother (<b>c</b>).</p>
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<p>The D136V change in the three-dimensional structure of human mitochondrial 3-hydroxy-3-methylglutaryl-coenzyme a synthase 2 (PDB ID: 2WYA). The wildtype is D136 and the mutant is V136. The D136V change causes H-bond losses between D136 and K137, S138, and K139.</p>
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26 pages, 5016 KiB  
Review
Arrhythmogenic Right Ventricular Cardiomyopathy: A Comprehensive Review
by Taha Shaikh, Darren Nguyen, Jasmine K. Dugal, Michael V. DiCaro, Brianna Yee, Nazanin Houshmand, KaChon Lei and Ali Namazi
J. Cardiovasc. Dev. Dis. 2025, 12(2), 71; https://doi.org/10.3390/jcdd12020071 - 13 Feb 2025
Viewed by 504
Abstract
Arrhythmogenic right ventricular cardiomyopathy (ARVC) is characterized by structural abnormalities, arrhythmias, and a spectrum of genetic and clinical manifestations. Clinically, ARVC is structurally distinguished by right ventricular dilation due to increased adiposity and fibrosis in the ventricular walls, and it manifests as cardiac [...] Read more.
Arrhythmogenic right ventricular cardiomyopathy (ARVC) is characterized by structural abnormalities, arrhythmias, and a spectrum of genetic and clinical manifestations. Clinically, ARVC is structurally distinguished by right ventricular dilation due to increased adiposity and fibrosis in the ventricular walls, and it manifests as cardiac arrhythmias ranging from non-sustained ventricular tachycardia to sudden cardiac death. Its prevalence has been estimated to range from 1 in every 1000 to 5000 people, with its large range being attributed to the variability in genetic penetrance from asymptomatic to significant burden. It is even suggested that the prevalence is underestimated, as the presence of genotypic mutations does not always lead to clinical manifestations that would facilitate diagnosis. Additionally, while set criteria have been in place since the 1990s, newer understanding of this condition and advancements in cardiac technology have prompted multiple revisions in the diagnostic criteria for ARVC. Novel discoveries of gene variants predisposing patients to ARVC have led to established screening techniques while providing insight into genetic counseling and management. This review aims to provide an overview of the genetics, pathophysiology, and clinical approach to ARVC. It will also focus on clinical presentation, ARVC diagnostic criteria, electrophysiological findings, including electrocardiogram characteristics, and imaging findings from cardiac MRI, 2D, and 3D echocardiogram. Current management options—including anti-arrhythmic medications, device indications, and ablation techniques—and the effectiveness of treatment will also be reviewed. Full article
(This article belongs to the Special Issue Diagnosis, Treatment, and Genetics of Cardiomyopathy)
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<p>Right Ventricular Outflow Tract (RVOT) Ventricular Tachycardia, noted by Inferior Axis (positive QRS in inferior leads, blue brackets) and Left-Bundle Branch Block (blue arrow).</p>
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<p>RVOT Ventricular Tachycardia with Inferior Axis (red brackets) and Left-Bundle Branch Block Morphology in V1 (green bracket).</p>
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<p>Epsilon Waves noted diffusely, most prominently in 2, 3, aVF, V1–V6 (red arrows). Prolonged S-Wave upstroke exhibited in V1, V2, V3 (blue arrows).</p>
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<p>Cardiac Magnetic Resonance Images (MRI) showcasing characteristic fibrofatty infiltration of the right ventricular myocardium (red arrows). (<b>Left</b>) Fat-suppressed contrast-enhanced T1-weighted MRI. (<b>Right</b>) Steady-state free precession (SSFP) MRI.</p>
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<p>Electrophysiologic mapping revealing multifocal premature ventricular complexes arising from right ventricular outflow tract (RVOT) septum and free wall in red, and propagating outward, depicted sequentially across the color spectrum in red, orange, yellow, green, blue, and purple, with purple being the furthest from the origin point.</p>
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13 pages, 2078 KiB  
Article
The Role of MRI Radiomics Using T2-Weighted Images and the Apparent Diffusion Coefficient Map for Discriminating Between Warthin’s Tumors and Malignant Parotid Gland Tumors
by Delia Doris Donci, Carolina Solomon, Mihaela Băciuț, Cristian Dinu, Sebastian Stoia, Georgeta Mihaela Rusu, Csaba Csutak, Lavinia Manuela Lenghel and Anca Ciurea
Cancers 2025, 17(4), 620; https://doi.org/10.3390/cancers17040620 - 12 Feb 2025
Viewed by 439
Abstract
Background/Objectives: Differentiating between benign and malignant parotid gland tumors (PGT) is essential for establishing the treatment strategy, which is greatly influenced by the tumor’s histology. The objective of this study was to evaluate the role of MRI-based radiomics in the differentiation between Warthin’s [...] Read more.
Background/Objectives: Differentiating between benign and malignant parotid gland tumors (PGT) is essential for establishing the treatment strategy, which is greatly influenced by the tumor’s histology. The objective of this study was to evaluate the role of MRI-based radiomics in the differentiation between Warthin’s tumors (WT) and malignant tumors (MT), two entities that proved to present overlapping imaging features on conventional and functional MRI sequences. Methods: In this retrospective study, a total of 106 PGT (66 WT, 40 MT) with confirmed histology were eligible for radiomic analysis, which were randomly split into a training group (79 PGT; 49 WT; 30 MT) and a testing group (27 PGT; 17 WT, 10 MT). The radiomic features were extracted from 3D segmentations of PGT performed on the following sequences: PROPELLER T2-weighted images and the ADC map, using a dedicated software. First- and second-order features were derived for each lesion, using original and filtered images. Results: After employing several feature reduction techniques, including LASSO regression, three final radiomic parameters were identified to be the most significant in distinguishing between the two studied groups, with fair AUC values that ranged between 0.703 and 0.767. All three radiomic features were used to construct a Radiomic Score that presented the highest diagnostic performance in distinguishing between WT and MT, achieving an AUC of 0.785 in the training set, and 0.741 in the testing set. Conclusions: MRI-based radiomic features have the potential to serve as promising novel imaging biomarkers for discriminating between Warthin’s tumors and malignant tumors in the parotid gland. Nevertheless, it is still to prove how radiomic features can consistently achieve higher diagnostic performance, and if they can outperform alternative imaging methods, ideally in larger, multicentric studies. Full article
(This article belongs to the Special Issue The Roles of Deep Learning in Cancer Radiotherapy)
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<p>Three-dimensional segmentation of a malignant parotid gland tumor (histopathologically confirmed acinic cell carcinoma) performed on the T2-weighted image (<b>A</b>) and the ADC map (<b>B</b>).</p>
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<p>Three-dimensional segmentation exemplification of a histopathologically confirmed Warthin’s tumor performed on the T2-weighted image (<b>A</b>) and the ADC map (<b>B</b>).</p>
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<p>The radiomic pipeline. WT = Warthin’s tumors; MT = malignant tumors; ICC = intraclass correlation coefficient; BHC = Benjamani–Hochberg Correction; LASSO = least absolute shrinkage and selection operator; ROC = receiver-operating characteristic.</p>
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<p>LASSO regression. (<b>A</b>) Cross-validation curve: <span class="html-italic">X</span>-axis represents the logarithm of the regularization parameter lambda (<span class="html-italic">λ</span>); <span class="html-italic">Y</span>-axis represents the binomial deviance as a measure of model fit; the red dots represent the mean binomial deviance calculated for each value of <span class="html-italic">λ</span> during cross-validation; the error bars show the standard error of the binomial deviance at each <span class="html-italic">λ</span>; the first vertical line corresponds to the <span class="html-italic">λ</span> value that minimizes the deviance (the optimal <span class="html-italic">λ</span>; the second vertical line represents the largest <span class="html-italic">λ</span> within one standard error of the minimum deviance. (<b>B</b>) Coefficient path: The <span class="html-italic">X</span>-axis shows the logarithm of the regularization parameter <span class="html-italic">λ</span>; the <span class="html-italic">Y</span>-axis represents the magnitude of the regression coefficients; the colored lines represent the paths of individual coefficients as <span class="html-italic">λ</span> changes; the vertical dotted line corresponds to the optimal <span class="html-italic">λ</span> selected by cross-validation.</p>
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<p>Receiver operating characteristic (ROC) curve of the Radiomic Score for differentiating between Warthin’s tumors and malignant tumors of the parotid gland in the training set (<b>A</b>) and testing set (<b>B</b>).</p>
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19 pages, 1679 KiB  
Article
Comparative Effectiveness of Non-Pharmacological and Pharmacological Treatments for Non-Acute Lumbar Disc Herniation: A Multicenter, Pragmatic, Randomized Controlled, Parallel-Grouped Pilot Study
by Doori Kim, Jee Young Lee, Yoon Jae Lee, Chang Sop Yang, Chang-Hyun Han and In-Hyuk Ha
J. Clin. Med. 2025, 14(4), 1204; https://doi.org/10.3390/jcm14041204 - 12 Feb 2025
Viewed by 420
Abstract
Background/Objectives: We aimed to compare non-pharmacological (non-PHM) and pharmacological (PHM) treatment for patients with non-acute lumbar disc herniation (LDH) and determine the feasibility of a large-scale study. Methods: This was a two-armed, parallel, multicenter, pragmatic controlled trial performed in South Korea. All patients [...] Read more.
Background/Objectives: We aimed to compare non-pharmacological (non-PHM) and pharmacological (PHM) treatment for patients with non-acute lumbar disc herniation (LDH) and determine the feasibility of a large-scale study. Methods: This was a two-armed, parallel, multicenter, pragmatic controlled trial performed in South Korea. All patients underwent magnetic resonance imaging (MRI) scans both at the screening stage and the last follow-up. Patients with LDH findings on MRI were randomly assigned to non-PHM and PHM groups. Treatment was administered twice a week for a total of 8 weeks, and follow-up assessments were performed at weeks 9, 13, and 27 post-randomization. The primary outcome was the Oswestry Disability Index (ODI) score. A linear mixed model was used for primary analysis from intention-to-treat perspectives. The incremental cost-effectiveness ratio (ICER) was calculated for economic evaluation. Results: Thirty-six patients were enrolled, and thirty-five were included in the final analysis. At Week 9, the difference in ODI scores between the two groups was 5.17 (95% CI: −4.00 to 14.35, p = 0.262), and the numeric rating scale scores for lower back and leg pains were 1.89 (95% CI: 0.68 to 3.10, p = 0.003) and 1.52 (95% CI: 0.27 to 2.77, p = 0.018), respectively, confirming greater improvement in the non-PHM group than in the PHM group. The non-PHM group showed lower costs and higher quality-adjusted life years than the PHM group. The ICER calculated using the EuroQoL-5 Dimension (EQ-5D) was USD 20,926. Conclusions: We confirm the possibility that a non-PHM strategy could be a more effective and cost-effective treatment option than PHM for patients with non-acute lumbar disc herniation. Furthermore, this pilot study confirmed the feasibility of the main study in terms of design and patient compliance. Full article
(This article belongs to the Section Pharmacology)
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<p>Flowchart of participants.</p>
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<p>Area under the curves of each outcome by treatment group. (<b>A</b>) Oswestry disability index, (<b>B</b>) NRS of low back pain, (<b>C</b>) NRS for leg pain. AUC, area under the curve; PHM, pharmacological; Wk, week; ODI, Oswestry Disability Index; NRS, numeric rating scale; VAS, visual analog scale.</p>
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<p>Cost-effectiveness plane and acceptability curves of non-pharmacological treatments compared with pharmacological treatments. Cost-effectiveness plane (<b>A</b>,<b>C</b>) and acceptability curves (<b>B</b>,<b>D</b>) comparing non-pharmacological and pharmacological treatment strategies. In the cost-effectiveness plane (<b>A</b>,<b>C</b>), each point represents a bootstrap sample of the incremental cost-effectiveness ratio. The <span class="html-italic">x</span>-axis indicates the difference in QALYs, and the <span class="html-italic">y</span>-axis represents the difference in cost. The diagonal dashed line represents the willingness-to-pay threshold. The number of points below the dashed line among the total number of points is the probability that non-PHM is cost-effective at that WTP. The acceptability curves (<b>B</b>,<b>D</b>) show the probability that the non-PHM treatment is cost-effective at different WTP values. EQ-5D-5L, EuroQoL 5-dimension 5-level instrument; SF-6D, Short-Form 6-Dimension; QALY, quality-adjusted life year.</p>
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14 pages, 5726 KiB  
Article
Personalized 3D-Printed Prostheses for Bone Defect Reconstruction After Tumor Resection in the Foot and Ankle
by Chang-Jin Yon, Byung-Chan Choi, Jung-Min Lee and Si-Wook Lee
J. Funct. Biomater. 2025, 16(2), 62; https://doi.org/10.3390/jfb16020062 - 11 Feb 2025
Viewed by 370
Abstract
Three-dimensional (3D)-printing technology is revolutionizing orthopedic oncology by providing precise, customized solutions for complex bone defects following tumor resection. Traditional modular endoprostheses are prone to complications such as fretting corrosion and implant failure, underscoring the need for innovative approaches. This case series reports [...] Read more.
Three-dimensional (3D)-printing technology is revolutionizing orthopedic oncology by providing precise, customized solutions for complex bone defects following tumor resection. Traditional modular endoprostheses are prone to complications such as fretting corrosion and implant failure, underscoring the need for innovative approaches. This case series reports on three patients treated with 3D-printed, patient-specific prostheses and cutting guides. Preoperative CT and MRI data were used to design implants tailored to each patient’s anatomy, manufactured using electron beam melting technology with a titanium–aluminum–vanadium alloy. Functional outcomes showed significant improvements: in Case I, AOFAS improved from 71 to 96, and VAS decreased from 6 to 1; in Case II, AOFAS increased from 65 to 79, and VAS decreased from 5 to 3. Radiographic evaluations demonstrated stable prosthesis placement and early evidence of bone integration in Cases I and II, while in Case III, localized disease control was achieved before systemic progression. This case series highlights the transformative potential of 3D-printed prostheses in addressing the challenges of reconstructing anatomically complex defects. By enabling precise tumor resection and improving functional outcomes, this approach can advance current practices in orthopedic oncology. Further research should explore larger cohorts and use cost-effectiveness analyses to validate these findings and facilitate broader clinical adoption. Full article
(This article belongs to the Special Issue Advanced 3D Printing Biomaterials)
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<p>Preoperative imaging. (<b>A</b>) Preoperative X-ray showing a well-demarcated lesion within the calcaneus with cortical thinning and intact surrounding bone structures. (<b>B</b>) Preoperative CT scan demonstrating a 25 × 12 × 15 mm hypodense lesion in the calcaneal body, with thinning of the cortical bone and no evidence of periosteal reaction. (<b>C</b>) Preoperative MRI. (<b>a</b>) T1-weighted image showing homogenous low signal intensity. (<b>b</b>) T2-weighted image showing heterogeneous high signal intensity with central low-signal areas.</p>
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<p>3D Surgical planning. (<b>A</b>) 3D image rendering from CT data used to simulate the calcaneal defect and design a personalized prosthesis for surgical reconstruction. (<b>B</b>) Clinical photograph of the 3D-printed prosthesis used for simulation.</p>
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<p>Intraoperative findings. (<b>A</b>) Clinical photograph showing the calcaneal defect after excising the tumor via an oblique incision on the medial heel. (<b>B</b>) Intraoperative view of the implantation of the pre-designed personalized prosthesis into the calcaneal defect.</p>
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<p>Postoperative imaging. Postoperative radiographs of the calcaneus of right foot in axial and lateral views showing stable fixation and prosthesis placement.</p>
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<p>Preoperative imaging. (<b>A</b>) Preoperative X-ray demonstrating a lytic lesion with well-defined margins in the tibia. (<b>B</b>) Preoperative CT scan showing the lesion’s cortical involvement and surrounding bone structure integrity. (<b>C</b>) Preoperative MRI. (<b>a</b>) T1-weighted image displaying a hypointense lesion within the tibia. (<b>b</b>) T2-weighted image showing heterogeneous hyperintensity with internal low-signal regions. (<b>c</b>) Contrast-enhanced T1-weighted image highlighting the lesion’s vascular characteristics.</p>
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<p>3D Surgical planning. Three-dimensional image rendering from CT data used for preoperative planning and simulation of prosthesis design.</p>
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<p>Intraoperative findings. (<b>A</b>) Intraoperative image showing the 3D-printed cutting guide being tested for proper size and fit after bone exposure. (<b>B</b>) Cutting guide secured to the tibia using K-wires for precise positioning. (<b>C</b>) Cortical bone resection performed using the cutting guide to create a well-defined cortical window. (<b>D</b>) Verification of the alignment of the cortical window with the cutting guide. (<b>E</b>) Patient-specific prosthesis tested for fit within the bone defect, with cortical bone temporarily fixed using K-wires. (<b>F</b>) Post-curettage view showing complete removal of the tumor within the tibia cavity. (<b>G</b>) Intraoperative insertion of the patient-specific prosthesis into the tibial bone defect. (<b>H</b>) Cortical window replaced over the prosthesis for anatomical reconstruction. (<b>I</b>) Final fixation using a medial malleolar plate to secure the cortical window and prosthesis.</p>
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<p>Postoperative imaging. Postoperative radiographs of the ankle in anteroposterior and lateral views showing stable fixation with a locking plate with proper prosthesis placement.</p>
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<p>Preoperative imaging. (<b>A</b>) Preoperative X-ray showing a lytic lesion in the distal third of the fibula with cortical thinning and a visible fracture line. (<b>B</b>) Preoperative CT scan illustrating the lesion’s cortical destruction, dimensions, and evidence of a pathological fracture. (<b>C</b>) Preoperative MRI. (<b>a</b>) T2-weighted image demonstrating a hypointense lobulated mass with irregular margins. (<b>b</b>) Contrast-enhanced T1-weighted image showing heterogeneous intermediate-to-low signal intensity with central necrotic areas and prominent extraosseous extension.</p>
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<p>Intraoperative findings. (<b>A</b>) Personalized cutting guide fixed to the fibula, facilitating en bloc resection using a microsaw. (<b>B</b>) Clinical photograph of the tumor removed via en bloc resection. (<b>C</b>) Insertion of the 3D-printed patient-specific prosthesis into the bone defect following en bloc resection.</p>
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<p>Postoperative imaging. Postoperative radiographs of the ankle in anteroposterior and lateral views showing stable intramedullary prosthesis fixation and proper alignment.</p>
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21 pages, 16064 KiB  
Article
A Novel 3D Magnetic Resonance Imaging Registration Framework Based on the Swin-Transformer UNet+ Model with 3D Dynamic Snake Convolution Scheme
by Yaolong Han, Lei Wang, Zizhen Huang, Yukun Zhang and Xiao Zheng
J. Imaging 2025, 11(2), 54; https://doi.org/10.3390/jimaging11020054 - 11 Feb 2025
Viewed by 619
Abstract
Transformer-based image registration methods have achieved notable success, but they still face challenges, such as difficulties in representing both global and local features, the inability of standard convolution operations to focus on key regions, and inefficiencies in restoring global context using the decoder. [...] Read more.
Transformer-based image registration methods have achieved notable success, but they still face challenges, such as difficulties in representing both global and local features, the inability of standard convolution operations to focus on key regions, and inefficiencies in restoring global context using the decoder. To address these issues, we extended the Swin-UNet architecture and incorporated dynamic snake convolution (DSConv) into the model, expanding it into three dimensions. This improvement enables the model to better capture spatial information at different scales, enhancing its adaptability to complex anatomical structures and their intricate components. Additionally, multi-scale dense skip connections were introduced to mitigate the spatial information loss caused by downsampling, enhancing the model’s ability to capture both global and local features. We also introduced a novel optimization-based weakly supervised strategy, which iteratively refines the deformation field generated during registration, enabling the model to produce more accurate registered images. Building on these innovations, we proposed OSS DSC-STUNet+ (Swin-UNet+ with 3D dynamic snake convolution). Experimental results on the IXI, OASIS, and LPBA40 brain MRI datasets demonstrated up to a 16.3% improvement in Dice coefficient compared to five classical methods. The model exhibits outstanding performance in terms of registration accuracy, efficiency, and feature preservation. Full article
(This article belongs to the Section Image and Video Processing)
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<p>Deep-learning-based image registration architecture.</p>
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<p>Structure of OSS DSC-STUNet+ network model.</p>
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<p>Structure of 3D DSC-STUNet+ network model.</p>
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<p>The multi-fusion dense skip connection block.</p>
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<p>Schematic diagram of 3D dynamic snake convolution.</p>
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<p>The relationship between the registration model and the optimization model.</p>
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<p>Registration results and deformation fields of different methods on the IXI dataset (z = 124).</p>
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<p>Registration results and segmented images of different methods on the OASIS dataset (z = 124).</p>
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<p>The registration results, deformation field, and deformation grid of the registration model before and after optimization.</p>
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<p>Dice scores of the different convolutions tested in the model.</p>
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<p>Before introducing the 3D dynamic snake convolution, the 3D DSC-STUNet+ model had a total of eight ordinary convolutions, numbered from I to VIII. All eight convolution positions can be replaced with 3D dynamic snake convolutions instead of ordinary convolutions.</p>
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<p>The Dice values of the dynamic snake convolution tested at different positions in the model.</p>
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<p>Dice scores and training time of models with different iteration settings.</p>
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13 pages, 2733 KiB  
Article
Radiomic Analysis of Magnetic Resonance Imaging for Breast Cancer with TP53 Mutation: A Single Center Study
by Jung Ho Park, Lyo Min Kwon, Hong Kyu Lee, Taeryool Koo, Yong Joon Suh, Mi Jung Kwon and Ho Young Kim
Diagnostics 2025, 15(4), 428; https://doi.org/10.3390/diagnostics15040428 - 10 Feb 2025
Viewed by 422
Abstract
Background: Radiomics is a non-invasive and cost-effective method for predicting the biological characteristics of tumors. In this study, we explored the association between radiomic features derived from magnetic resonance imaging (MRI) and genetic alterations in patients with breast cancer. Methods: We [...] Read more.
Background: Radiomics is a non-invasive and cost-effective method for predicting the biological characteristics of tumors. In this study, we explored the association between radiomic features derived from magnetic resonance imaging (MRI) and genetic alterations in patients with breast cancer. Methods: We reviewed electronic medical records of patients with breast cancer patients with available targeted next-generation sequencing data available between August 2018 and May 2021. Substraction imaging of T1-weighted sequences was utilized. The tumor area on MRI was segmented semi-automatically, based on a seeded region growing algorithm. Radiomic features were extracted using the open-source software 3D slicer (version 5.6.1) with PyRadiomics extension. The association between genetic alterations and radiomic features was examined. Results: In total, 166 patients were included in this study. Among the 50 panel genes analyzed, only TP53 mutations were significantly associated with radiomic features. Compared with TP53 wild-type tumors, TP53 mutations were associated with larger tumor size, advanced stage, negative hormonal receptor status, and HER2 positivity. Tumors with TP53 mutations exhibited higher values for Gray Level Non-Uniformity, Dependence Non-Uniformity, and Run Length Non-Uniformity, and lower values for Sphericity, Low Gray Level Emphasis, and Small Dependence Low Gray Level emphasis compared to TP53 wild-type tumors. Six radiomic features were selected to develop a composite radiomics score. Receiver operating characteristic curve analysis showed an area under the curve of 0.786 (95% confidence interval, 0.719–0.854; p < 0.001). Conclusions: TP53 mutations in breast cancer can be predicted using MRI-derived radiomic analysis. Further research is needed to assess whether radiomics can help guide treatment decisions in clinical practice. Full article
(This article belongs to the Special Issue Advances in Diagnosis and Prognosis of Breast Cancer)
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<p>Radiomics work-flow of the study. (<b>A</b>) Substraction images were loaded. (<b>B</b>) Tumor area was segmented semi-automatically. (<b>C</b>) Radiomic features were extracted using radiomics module. (<b>D</b>) Logistic regression using radiomics features. (<b>E</b>) <span class="html-italic">TP53</span> mutations were predicted using ROC curve analysis.</p>
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<p>Flow-diagram of the patient selection process.</p>
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<p>Mutational profiles of the tumors shown by Oncoprint.</p>
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<p>Three-dimensional views of the segmented tumors with <span class="html-italic">TP53</span> mutations.</p>
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