When Godzilla comes ashore at Abarishi, a scene of him walking past a lighthouse and smashing it with his tail was cut.
After Godzilla's first confrontation with Biollante in Lake Ashino, which is set ablaze by Godzilla's radioactive breath, spores from the plant creature shower the surrounding countryside causing flowers to suddenly bloom.
Originally Godzilla was to attack the Kansai Airport in Osaka, which was under construction at the time of filming, but permission could not be obtained. Instead, Godzilla and Miki engage in a telepathic battle near a heliport for the site in the Ise Channel.
A discarded concept was to have Biollante attempt to physically absorb Godzilla during the climactic battle. This was scrapped due to time and budgetary considerations but was the concept was visualized for the climax of 'Godzilla 2000'.
