Architecture of the spinach plastid-encoded RNA polymerase
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8xzv
Q-score: 0.444
Wang T, Wang GL, Fang Y, Zhang Y, Peng W, Zhou Y, Zhang A, Yu LJ, Lu C
Nat Commun (2024) 15 pp. 9838-9838 [ Pubmed: 39537621 DOI: doi:10.1038/s41467-024-54266-2 ]
- Superoxide dismutase (31 kDa, Protein from Spinacia oleracea)
- Ptac18 (17 kDa, Protein from Spinacia oleracea)
- Protein plastid transcriptionally active 14 isoform x2 (56 kDa, Protein from Spinacia oleracea)
- Ptac3 (101 kDa, Protein from Spinacia oleracea)
- Superoxide dismutase (31 kDa, Protein from Spinacia oleracea)
- Protein plastid transcriptionally active 7 (19 kDa, Protein from Spinacia oleracea)
- Protein plastid transcriptionally active 10 (80 kDa, Protein from Spinacia oleracea)
- Dna-directed rna polymerase subunit beta (121 kDa, Protein from Spinacia oleracea)
- Dna-directed rna polymerase subunit beta'' (154 kDa, Protein from Spinacia oleracea)
- Dna-directed rna polymerase subunit beta' (78 kDa, Protein from Spinacia oleracea)
- Protein plastid transcriptionally active 12 (59 kDa, Protein from Spinacia oleracea)
- Mure (85 kDa, Protein from Spinacia oleracea)
- Dna-directed rna polymerase subunit alpha (38 kDa, Protein from Spinacia oleracea)
- Spinach plastid-encoded rna polymerase (960 kDa, Complex from Spinacia oleracea)
- Fe (iii) ion (55 Da, Ligand)
- Thioredoxin-like protein citrx, chloroplastic (20 kDa, Protein from Spinacia oleracea)
- Ptac6 (37 kDa, Protein from Spinacia oleracea)
- Fructokinase-like 2, chloroplastic isoform x2 (65 kDa, Protein from Spinacia oleracea)
- Fructokinase-like 1, chloroplastic (53 kDa, Protein from Spinacia oleracea)
Pre-fusion Measles virus fusion protein complexed with Fab 77
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 8ut2
Q-score: 0.583
Zyla DS, Della Marca R, Niemeyer G, Zipursky G, Stearns K, Leedale C, Sobolik EB, Callaway HM, Hariharan C, Peng W, Parekh D, Marcink TC, Diaz Avalos R, Horvat B, Mathieu C, Snijder J, Greninger AL, Hastie KM, Niewiesk S, Moscona A, Porotto M, Ollmann Saphire E
Science (2024) 384 pp. eadm8693-eadm8693 [ DOI: doi:10.1126/science.adm8693 Pubmed: 38935733 ]
- Fusion glycoprotein f0 (44 kDa, Protein from Measles morbillivirus)
- Mab 77 heavy chain (52 kDa, Protein from Mus musculus)
- Antibody 77 fab heavy chain, antibody 77 fab light chain (Complex from Mus musculus)
- Fusion glycoprotein f0 (12 kDa, Protein from Measles morbillivirus)
- Structure of measles fusion glycoprotein in complex with fab 77 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Water (18 Da, Ligand)
- Mab 77 light chain (25 kDa, Protein from Mus musculus)
- Measles virus fusion glycoprotein (Complex from Measles morbillivirus)
Structure of the Measles virus Fusion protein in the post-fusion conformation
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8utf
Q-score: 0.572
Zyla DS, Della Marca R, Niemeyer G, Zipursky G, Stearns K, Leedale C, Sobolik EB, Callaway HM, Hariharan C, Peng W, Parekh D, Marcink TC, Diaz Avalos R, Horvat B, Mathieu C, Snijder J, Greninger AL, Hastie KM, Niewiesk S, Moscona A, Porotto M, Ollmann Saphire E
Science (2024) 384 pp. eadm8693-eadm8693 [ DOI: doi:10.1126/science.adm8693 Pubmed: 38935733 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Structure of the measles virus fusion protein in the post-fusion conformation (Complex from Measles virus strain Ichinose-B95a)
- Fusion glycoprotein f0 (44 kDa, Protein from Measles virus strain Ichinose-B95a)
- Water (18 Da, Ligand)
- Fusion glycoprotein f0 (12 kDa, Protein from Measles virus strain Ichinose-B95a)
Structure of the Measles virus Fusion protein in the pre-fusion conformation
Resolution: 2.11 Å
EM Method: Single-particle
Fitted PDBs: 8uup
Q-score: 0.637
Zyla DS, Della Marca R, Niemeyer G, Zipursky G, Stearns K, Leedale C, Sobolik EB, Callaway HM, Hariharan C, Peng W, Parekh D, Marcink TC, Diaz Avalos R, Horvat B, Mathieu C, Snijder J, Greninger AL, Hastie KM, Niewiesk S, Moscona A, Porotto M, Ollmann Saphire E
Science (2024) 384 pp. eadm8693-eadm8693 [ DOI: doi:10.1126/science.adm8693 Pubmed: 38935733 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Structure of the measles virus fusion protein in the pre-fusion conformation (Complex from Measles virus strain Ichinose-B95a)
- Fusion glycoprotein f0 (44 kDa, Protein from Measles virus strain Ichinose-B95a)
- Water (18 Da, Ligand)
- Fusion glycoprotein f0 (12 kDa, Protein from Measles virus strain Ichinose-B95a)
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 8uuq
Q-score: 0.663
Zyla DS, Della Marca R, Niemeyer G, Zipursky G, Stearns K, Leedale C, Sobolik EB, Callaway HM, Hariharan C, Peng W, Parekh D, Marcink TC, Diaz Avalos R, Horvat B, Mathieu C, Snijder J, Greninger AL, Hastie KM, Niewiesk S, Moscona A, Porotto M, Ollmann Saphire E
Science (2024) 384 pp. eadm8693-eadm8693 [ DOI: doi:10.1126/science.adm8693 Pubmed: 38935733 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Structure of the measles virus fusion protein in the pre-fusion conformation with bound [fip-hrc]2-peg11 (Complex from Measles virus strain Ichinose-B95a)
- Fusion glycoprotein f0 (44 kDa, Protein from Measles virus strain Ichinose-B95a)
- [fip-hrc]2-peg11 (503 Da, Protein from synthetic construct)
- Water (18 Da, Ligand)
- Fusion glycoprotein f0 (12 kDa, Protein from Measles virus strain Ichinose-B95a)
Fab 77-stabilized MeV F ectodomain fragment
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9at8
Q-score: 0.444
Zyla DS, Della Marca R, Niemeyer G, Zipursky G, Stearns K, Leedale C, Sobolik EB, Callaway HM, Hariharan C, Peng W, Parekh D, Marcink TC, Diaz Avalos R, Horvat B, Mathieu C, Snijder J, Greninger AL, Hastie KM, Niewiesk S, Moscona A, Porotto M, Ollmann Saphire E
Science (2024) 384 pp. eadm8693-eadm8693 [ DOI: doi:10.1126/science.adm8693 Pubmed: 38935733 ]
- Fusion glycoprotein f0 (57 kDa, Protein from Measles virus strain Ichinose-B95a)
- Antibody 77 fab heavy chain, antibody 77 fab light chain (Complex from Mus musculus)
- Mab 77 heavy chain (52 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Mab 77 light chain (25 kDa, Protein from Homo sapiens)
- Fab 77-stabilized mev f ectodomain fragment (43 kDa, Complex)
- Measles virus fusion glycoprotein (Complex from Measles virus strain Ichinose-B95a)
Prefusion RSV F Bound to Lonafarnib and D25 Fab
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 8kg5
Q-score: 0.499
Yang Q, Xue B, Liu F, Lu Y, Tang J, Yan M, Wu Q, Chen R, Zhou A, Liu L, Liu J, Qu C, Wu Q, Fu M, Zhong J, Dong J, Chen S, Wang F, Zhou Y, Zheng J, Peng W, Shang J, Chen X
Signal Transduct Target Ther (2024) 9 pp. 144-144 [ DOI: doi:10.1038/s41392-024-01858-5 Pubmed: 38853183 ]
- D25 light chain (23 kDa, Protein from Homo sapiens)
- D25 heavy chain (24 kDa, Protein from Homo sapiens)
- Fusion glycoprotein f0,fibritin (64 kDa, Protein from Enterobacteria phage T4)
- 4-{2-[4-(3,10-dibromo-8-chloro-6,11-dihydro-5h-benzo[5,6]cyclohepta[1,2-b]pyridin-11-yl)piperidin-1-yl]-2-oxoethyl}piperidine-1-carboxamide (638 Da, Ligand)
- Prefusion rsv f bound to lonafarnib and d25 fab (Complex from Human respiratory syncytial virus A (strain A2))
Resolution: 4.29 Å
EM Method: Single-particle
Fitted PDBs: 8hpl
Q-score: 0.292
Liang J, Yang X, Hu T, Gao Y, Yang Q, Yang H, Peng W, Zhou X, Guddat LW, Zhang B, Rao Z, Liu F
Structure (2023) 31 pp. 1158-1165.e3 [ DOI: doi:10.1016/j.str.2023.07.014 Pubmed: 37619560 ]
- Abc transporter, permease protein sugb (29 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Bacterial extracellular solute-binding protein (50 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Abc transporter, atp-binding protein sugc (43 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Trehalose-specific importer lpqy-sugabc complex (Complex from Mycolicibacterium smegmatis MC2 155)
- Abc sugar transporter, permease component (32 kDa, Protein from Mycolicibacterium smegmatis MC2 155)