Molecular Ecology (2006) 15, 449–458
doi: 10.1111/j.1365-294X.2005.02786.x
Testing phylogeographic predictions on an active volcanic
island: Brachyderes rugatus (Coleoptera: Curculionidae) on
La Palma (Canary Islands)
mBlackwell Publishing Ltd
B R E N T C . E M E R S O N ,* S H A U N F O R G I E ,*‡ S A R A G O O D A C R E * and P E D R O O R O M Í †
Centre for Ecology, Evolution and Conservation, School of Biological Sciences, University of East Anglia, Norwich NR4 7TJ, UK,
†Departamento de Zoología, Facultad de Biología, Universidad de La Laguna, 38205 La Laguna, Tenerife, Spain
Abstract
Volcanic islands with well-characterized geological histories can provide ideal templates for
generating and testing phylogeographic predictions. Many studies have sought to utilize these
to investigate patterns of colonization and speciation within groups of closely related species
across a number of islands. Here we focus attention within a single volcanic island with a
well-characterized geological history to develop and test phylogeographic predictions. We
develop phylogeographic predictions within the island of La Palma of the Canary Islands and
test these using 69 haplotypes from 570 base pairs of mitochondrial DNA cytochrome oxidase
II sequence data for 138 individuals of Brachyderes rugatus rugatus, a local endemic subspecies of curculionid beetle occurring throughout the island in the forests of Pinus canariensis.
Although geological data do provide some explanatory power for the phylogeographic patterns found, our network-based analyses reveal a more complicated phylogeographic history
than initial predictions generated from data on the geological history of the island. Reciprocal
illumination of geological and phylogeographic history is also demonstrated with previous
geological speculation gaining phylogeographic corroboration from our analyses.
Keywords: colonization, geology, mitochondrial DNA, nested clade phylogeographic analysis,
phylogeography
Received 16 March 2005; revision received 5 August 2005; accepted 23 September 2005
Introduction
Molecular phylogenetic methods have increasingly been
turned to as tools for interpreting and understanding the
origins of species diversity on islands (Emerson 2002).
Oceanic island systems are attractive environments for
studying evolution for a number of reasons: (i) they present
discrete geographic entities within defined oceanic boundaries, (ii) gene flow between individual islands is reduced
by oceanic barriers, (iii) their often small geographic size
has made the cataloguing of flora and fauna easier than
continental systems, (iv) despite their small geographic
size they can contain a diversity of habitats, and (v) they are
often geologically dynamic with historical and contemporary
volcanic and erosional activity. With few exceptions (e.g.
Correspondence: Brent Emerson, Fax: 44-01603-592250; E-mail:
b.emerson@uea.ac.uk
‡Present address: HortResearch, Mt Albert Research Centre,
Private Bag 92169, Auckland, New Zealand
© 2006 Blackwell Publishing Ltd
Juan et al. 1998; Pestano & Brown 1999; Brown et al. 2000;
Holland & Hadfield 2002; Beheregaray et al. 2003) the majority
of molecular phylogenetic studies have focused on the
relationships among multiple species occurring on one or
more islands, or one species occurring on multiple islands.
However, the above features that make oceanic islands
attractive for this purpose also provide an ideal template for
the study of intraspecific phylogeographic patterns within
individual islands. Continental areas are the typical domain
for intraspecific phylogeographic studies, primarily to infer
the historical movements of species, and to relate these to
past climatic change events mediated by glacial cycling.
Volcanically active oceanic islands, particularly geologically
young ones, offer the opportunity to generate phylogeographic predictions based on documented geological events
of volcanic growth and erosional decay. In this study, we
use the geologically young and well-characterized island
of La Palma to generate phylogeographic predictions for
Brachyderes rugatus rugatus, a local endemic subspecies of
curculionid beetle occurring throughout the island in the
450 B . C . E M E R S O N E T A L .
Fig. 1 Map of La Palma showing sampling
locations, the distribution of Pinus canariensis
(darker shading) and major geological
features. The geologically older terrains of
the northern shield occur above the dashed
line. The geologically younger terrains of
Cumbre Vieja occur below the dotted line.
The solid line encloses the Bejenado terrain.
Large-scale erosion or landslide events are
indicated by toothed lines. Inset shows La
Palma in relation to the other six main
islands of the Canary archipelago. See text
for further details.
forests of Pinus canariensis. We then test these predictions
with sequence data for the mitochondrial DNA (mtDNA)
cytochrome oxidae II (COII) gene.
Studies of the geology of La Palma have led to a fairly
complete understanding of the island’s geological history
(Ancochea et al. 1994; Carracedo & Day 2002) with two welldefined edifices — the northern shield occurring centrally
in the north, composed mainly of older volcanic terrains,
and a southern ridge, the Cumbre Vieja constituted mainly
by terrains of more recent volcanic origin (Fig. 1). Subaerial
development of the northern shield began about 1.7–2.0
million years ago (Ma), and this development continued
until about 0.55 Ma, with limited activity occurring until
about 0.4 Ma (Fig. 1). The subaerial volcanic development
of the northern shield was dominated by two volcanoes. The
Garafia volcano was active from 1.7 to 1.2 Ma, and following
a catastrophic landslide of its southern flank, activity was
then dominated by the Taburiente volcano, which remained
active from 1.2 to 0.4 Ma. From about 0.8 – 0.7 Ma, in the
final stages of the development of the Taburiente volcano,
the southward migration of volcanism began through the
southern, or Cumbre Nueva, rift zone of the volcano (Fig. 1).
At about 0.56 Ma this rift became unstable and its western
flank collapsed into the sea (Fig. 1). Following this collapse
the Bejenado volcano dominated activity from 0.56 to 0.49
Ma, forming what is now the southeast wall of the Caldera
de Taburiente (Fig. 1), with possible minor activity continuing until about 0.2 Ma. Following the Bejenado formation
erosion enlarged the Caldera de Taburiente (Fig. 1).
After the end of the growth of the Bejenado volcano, the
entire northern shield became volcanically quiescent, and
the island may have entered a period of volcanic calm.
© 2006 Blackwell Publishing Ltd, Molecular Ecology, 15, 449–458
P H Y L O G E O G R A P H Y O F B R A C H Y D E R E S R U G A T U S 451
However, it is also surmised that volcanism in the south of
La Palma may have built the submarine and core parts of
the Cumbre Vieja that are now concealed by younger lavas of
the Cumbre Vieja eruptive period (Carracedo & Day 2002).
It was from 0.12 Ma to the present that intense volcanic
activity in the south of La Palma led to the rapid development of the Cumbre Vieja ridge. This greatly increased the
size of the island, particularly to the south, and the southern
half of La Palma is dominated by these recent lavas (Fig. 1).
It is a reasonable assumption that a species with limited
dispersal ability, particularly a widespread species, present
on La Palma during its volcanic and erosional history,
would have been influenced by these events. That being
the case, these events should be evidenced through genetic
footprints of range expansions and range fragmentations,
consistent with predictions from volcanic and erosional
events across the 690-km2 area of La Palma. In this respect
the flightless pine weevil, B. r. rugatus, an endemic to La
Palma, is an ideal species to test phylogeographic predictions from volcanic and erosional events. La Palma is
predominantly vegetated by P. canariensis, which extends
from the northern shield, through Cumbre Nueva to the
south of Cumbre Vieja (Fig. 1). B. r. rugatus is reliant upon
P. canariensis (although it can also be found on other introduced pine species), thus the distribution of B. r. rugatus on
La Palma is clearly defined. Substantial genetic variation,
with a nonrandom geographic distribution, has previously
been reported for B. r. rugatus on La Palma, with a colonization origin from Tenerife early in the emergence of the
island’s subaerial terrains (Emerson et al. 2000). This earlier
study used traditional molecular phylogenetic methods of
maximum likelihood and neighbour joining to infer the
colonization history of the four subspecies of B. rugatus
across the archipelago. No obvious geological explanation
for the geographic structuring of mitotypes was found, but
the sampling strategy and analytical techniques were not
designed to specifically address this issue.
Here we sample 138 beetles from 18 localities across the
distribution of B. r. rugatus for the construction of a haplotype
network and application of nested clade phylogeographic
analysis (NCPA) for 570 base pairs (bp) of sequence data
for the mtDNA COII gene. Based on the volcanic and erosional history of La Palma, and the species biology of
B. r. rugatus, we make several predictions regarding the
geographic structuring and demographic signature of the
genetic data. We predict that ancestral haplotypes should
be predominantly located in the northern shield, with the
newer Bejenado and Cumbre Vieja volcanic terrains possessing more derived haplotypes, located peripherally in a
haplotype network. We also predict signatures of population
expansion in the areas of the geologically young Cumbre
Vieja volcanic terrains: haplotypes occurring in multiple
sampling localities, and haplotypes with multiple derivatives
differing by only one or a few mutations.
© 2006 Blackwell Publishing Ltd, Molecular Ecology, 15, 449–458
Materials and methods
Sampling
Brachyderes were collected from La Palma between 1996
and 2003. Eighteen localities were chosen, 11 in the northern
shield, 2 in the Bejenado volcanic terrain, and 5 in the
Cumbre Vieja volcanic terrain (Fig. 1). We aimed to collect
eight individuals for each location, but were unsuccessful
at Casas del Monte where only two beetles were found. All
samples were stored in absolute ethanol and stored at 4 °C
prior to extraction of DNA.
DNA extraction, PCR amplification and DNA
sequencing
For each individual beetle, DNA was extracted from the
head and pronotum using the QIAGEN DNeasy extraction
kit (QIAGEN) following manufacturers instructions. Polymerase chain reaction amplification of a 672-bp fragment
of the mtDNA COII gene was carried out in a PerkinElmer
ABI 9700 thermocycler with reagents and conditions as
described in Emerson et al. (2000) with the exception that a
3 mm concentration of MgCl2 was used. Reactions were then
cleaned using a QIAquick PCR clean-up kit (QIAGEN) following manufacturers instructions. Sequencing reactions were
performed with the forward PCR primer and an additional
internal primer using the PerkinElmer BigDye terminator
reaction mix with the PCR amplification primers and
run on a PerkinElmer ABI 3700 automated sequencer.
Data analyses
DNA sequences were aligned by eye and a haplotype
network constructed using the parsimony criterion as
described in Templeton et al. (1992) and implemented in the
program tcs version 1.18 (Clement et al. 2000). Ambiguities
in the haplotype network were resolved following the
two criteria suggested by Crandall & Templeton (1993):
(i) within a cladogram rare haplotypes are more likely to be
tip haplotypes, and common haplotypes are more likely
to be interior haplotypes; and (ii) singleton haplotypes are
more likely to be connected to haplotypes from the same
population as opposed to haplotypes from different populations. The haplotype network was then manually converted
into a nested series of clades using the rules defined in
Templeton et al. (1987), and Templeton & Sing (1993) for a
nested clade phylogeographic analysis (NCPA) (Templeton
et al. 1995; Templeton 1998, 2004) using the program
geodis version 2.2 (Posada et al. 2000) and the most recent
inference key provided on the geodis webpage (http://
darwin.uvigo.es/software/geodis.html). Coalescent theory
predicts that clades at the tips of a tree are younger than
interior clades to which the tips are connected. Thus
452 B . C . E M E R S O N E T A L .
Locality
Latitude
Longitude
Number of
haplotypes
Above Fuente de Olén
Montana Tagoja
Fuente de Olén
El Bejenado
Aridane
Montana de la Venta
El Jable
Lomo María
Fuencaliente
Altos de Jedey
Casas del Monte
Lomo Carballo
Garafia Lomo Machín
Pinar Garafia
Below Observatory
Puntagorda
Tirajafe
El Jesus
28.44.58 N
28.43.44 N
28.43.78 N
28.40.44 N
28.41.11 N
28.37.01 N
28.37.00 N
28.34.74 N
28.30.04 N
28.35.71 N
28.46.36 N
28.47.96 N
28.47.82 N
28.47.02 N
28.46.58 N
28.46.93 N
28.44.23 N
28.40.99 N
17.49.79 W
17.47.84 W
17.48.74 W
17.51.04 W
17.54.68 W
17.50.52 W
17.51.60 W
17.52.28 W
17.50.29 W
17.51.05 W
17.48.73 W
17.50.03 W
17.54.17 W
17.54.03 W
17.54.37 W
17.58.82 W
17.58.01 W
17.56.11 W
8
4
7
7
6
1
2
5
5
4
2
4
5
5
5
6
5
2
Table 1 Sampling localities, latitude, longiHaplotype
50, 51, 52, 53, 54, 55, 56, 57
30(4), 47(2), 48, 49
24, 25, 26(2), 27, 28, 29, 30
2(2), 3, 4, 5, 6, 7, 8
2(3), 51, 66, 67, 68, 69
2(8)
1(2), 2(8)
14(2), 15(3), 16, 17, 18
42, 43(2), 44(2), 45(2), 46
15, 34(5), 35(1), 36(1)
9, 13
9(4), 31, 32, 33(2)
9(4), 10, 11, 12, 13
37, 38, 39(3), 40(2), 41
13(2), 39(3), 58, 59, 60
13, 19(2), 20, 21(2), 22, 23
19, 39(3), 61(2), 62, 63
64(7), 65
contrasting interior clades with tip clades represents a
temporal contrast of older with younger demographic
events. The geographic distribution of haplotypes is also
quantified for the NCPA through two distance measures
(Templeton et al. 1995). The clade distance (Dc) measures
the spatial spread of a clade, while the nested clade
distance (Dn) measures how far a clade is from those clades
with which it is nested into a higher-level clade. Through
the combination of genealogical, geographic and temporal
information, NCPA first tests the null hypothesis of
random geographic distribution of haplotypes for all
nesting levels. If this hypothesis is rejected then the fit of
the data to different demographic scenarios incorporating
range fragmentation, long-distance dispersal, restricted gene
flow, range expansion (Templeton 2004) and secondary
contact (Templeton 2001) is tested by comparing the size and
significance of Dc and Dn values to predictions from coalescent theory and simulation analysis (Templeton et al. 1995).
Results
Sequences from 138 individual beetles yielded 69 different
haplotypes, with from one to eight haplotypes recorded
from a single location (Table 1). Of the 69 haplotypes, only
eight were found to occur in more than one location
(Fig. 2). All sequences have been deposited in the EMBL
nucleotide sequence database under accession numbers
(AJ389825–AJ389838 and AM072352–AM072410). Of a
total of 570 sites 66 (12%) were variable, among which 41
(62%) were parsimony informative.
tude, number of haplotypes in each locality,
and haplotype numbers for each locality,
with the number of individuals containing
that haplotype in brackets if more than one.
Haplotype numbers correspond to those in
Fig. 4
with a connection limit of 10 mutations and eight loops,
four of which were resolved by applying the criteria of
Crandall & Templeton (1993). Of the four remaining loops,
three could each be reduced to two possible alternatives
using the criteria of Crandall & Templeton (1993). Of these,
one represented a trivial arrangement and was broken
arbitrarily, while both alternatives for the other two were
considered for the nested clade analysis (see below). The
eighth loop has three equally probable break points connecting three phylogroups that are geographically discrete,
with the exception of haplotypes 15, 34, 35 and 36 in Altos
de Jedey. The three possible arrangements of the phylogroups are equally probable when considering genealogical
information alone, but differ when considering both the
genealogy and geography of the three networks (Fig. 3).
Networks B and C (Fig. 3) juxtapose phylogroups 1 and
3 by only two mutational differences implying a biotic
connection between the geographically disparate areas of
1 and 3 over a short temporal period, at the exclusion of the
geographically intermediate area 2. Alternatively, network
A juxtaposes phylogroups 1 and 3 with phylogroup 2, a
biologically realistic arrangement that does not imply longdistance movement of Brachyderes rugatus rugatus through,
but not including, an already inhabited area. Figure 4 shows
the haplotype network of Fig. 3A and its nesting design
inferred following the rules of Templeton et al. (1987) and
Templeton & Sing (1993). Nesting designs were also inferred
for the alternative topologies of Fig. 3A and NCPA was
performed on these arrangements as well.
Nested clade phylogeographic analysis
Haplotype network and nested design
Network estimation with tcs resulted in a single network
Table 2 shows the nested contingency analysis of geographic associations and the interpretations of the statistically
© 2006 Blackwell Publishing Ltd, Molecular Ecology, 15, 449–458
P H Y L O G E O G R A P H Y O F B R A C H Y D E R E S R U G A T U S 453
Fig. 2 The geographic distributions of haplotypes occurring in more than one location.
White circles represent single haplotypes
found in more than one location. Black
circles indicate haplotypes derived from a
widespread haplotype, with each black circle
representing a unique haplotype. Numbers
inside black circles indicate when more
than one unique derived haplotype occurs
in a location. Grey filled circles indicate the
geographic locations of ancestral haplotypes
to the widespread haplotype when these
are known.
Table 2 Significant clades for nested contingency analysis of geographic associations for mitochondrial DNA COII nucleotide sequence
haplotypes for Brachyderes rugatus rugatus on the island of La Palma and interpretation of the geodis output using the inference key of
Templeton (2004)
Clade
1.1
2.1
2.3
2.14
3.2
3.6
3.7
4.1
4.2
4.3
Total cladogram
Chi-squared statistic
45.72
31.54
6.00
10.00
7.20
13.00
30.00
44.14
41.46
69.16
226.51
Probability
Chain of inference
Inference
0.0042*
0.0532**
0.0473*
0.0219*
0.0527**
0.0010*
0.0000*
0.0000*
0.0000*
0.0000*
0.0000*
1-2-11-12 No
1-2-11-17 No
1–2
1-19-20-2
1-2-11-12 No
1–19 No
1-2-3-4 No
1-2-11-12-13 Yes
1-2-11-12 No
1-2-3-5-6-13 Yes
1-2-11-12 No
contiguous range expansion
inconclusive outcome
inconclusive outcome
inconclusive outcome
contiguous range expansion
allopatric fragmentation
restricted gene flow with isolation by distance
past fragmentation followed by range expansion
contiguous range expansion
past fragmentation followed by range expansion
contiguous range expansion
*Significant at the 0.05 level, **significant at the 0.1 level.
significant clades using the updated key of Templeton (2004)
for Fig. 4. At the level of the entire cladogram a history of
contiguous range expansion offers the best explanation
for the geographic distribution of genetic variation within
B. r. rugatus. However, among the three major clades other
historical processes also feature. Clade 4.1 is best explained
by past fragmentation followed by range expansion, with
internal clades 1.1 and 3.2 both conforming to a history of
contiguous range expansion. Contiguous range expansion
© 2006 Blackwell Publishing Ltd, Molecular Ecology, 15, 449–458
also has the best explanatory power for clade 4.2, with
none of its constituent subclades having any significant
geographic structure. Overall clade 4.3 conforms to a
history of past fragmentation followed by range expansion,
but internally subclade 3.6 is consistent with a history of
allopatric fragmentation, while the geographic distribution
of subclade 3.7 is best explained by restricted gene flow
with isolation by distance. Nested clade phylogeographic
analysis of the possible alternatives to the Fig. 3A were also
454 B . C . E M E R S O N E T A L .
Fig. 3 Three equally probable haplotype networks constructed with tcs version 1.18 (Clement et al. 2000) for 570 bp of mitochondrial DNA
COII nucleotide sequence data for Brachyderes rugatus rugatus. The three arrangements, A, B and C, are derived from the resolution of a
single loop. All are equally probable when only considering genealogical relationships, but network A is the single most probable network
when considering the geographic placement of the three main phylogroups, boxed and numbered 1–3 (see text for details). The map
indicates the geographic distribution of the phylogroups. Dashed lines ‘a’ and ‘b’ indicate the alternative connections of two additional
loops, with breakpoints indicated by dotted lines. These alternatives were considered for the NCPA. Open circles indicate sampled
haplotypes, and closed circles indicate unsampled or extinct haplotypes.
performed. The alternative connection ‘a’ between subclades
2 and 3 of Fig. 3A yielded a similar nesting design to Fig. 4
and the same set of statistical inferences. The alternative
connection ‘b’ within subclade 2 of Fig. 3B resulted in
changes to the nesting design of clades 4.1 and 4.2 of Fig. 4
with subclades 1.11 and 1.25 forming part of clade 4.1.
Under this arrangement clade 4.1 is now consistent with
contiguous range expansion, with two subclades also
reflecting this demographic history, and clade 4.2 has an
inconclusive outcome.
The three phylogroups of Fig. 3 are geographically well
defined and nonoverlapping except for the sampling locality
of Altos de Jedey where haplotypes from both phylogroups 1 and 2 can be found. One possible explanation for
this would be if range expansion has occurred from Altos
de Jedey in two directions, to the north (phylogroup 2) and
to the south (phylogroup 1). If this were the case then the
haplotypes from these two phylogroups in Altos de Jedey
should be closely related and ancestral in the network.
However, phylogenetically the haplotypes from these two
clades are very divergent from each other. The three
haplotypes from clade 4.2 (15, 34, 36) are between 18 and 22
mutations different from haplotype 35 of clade 4.1. An
alternative explanation is that Altos de Jedey is a point of
secondary contact between phylogroups 1 and 2. Templeton
(2001) describes a strategy for quantifying secondary
contact between divergent lineages within a nested clade
framework. When secondary contact occurs between
previously fragmented populations, haplotypes or clades
with very divergent geographic centres will be represented at the same location. The strategy of Templeton
(2001) involves calculating the average distance from the
geographic centre of the haplotypes or clades at increasing
nesting levels for the population of interest. In panmictic
populations, all haplotypes and clades are expected to
have the same geographic centre, so the average distance
© 2006 Blackwell Publishing Ltd, Molecular Ecology, 15, 449–458
P H Y L O G E O G R A P H Y O F B R A C H Y D E R E S R U G A T U S 455
Fig. 4 Nesting design for the haplotype network constructed from 570 bp of mitochondrial DNA COII nucleotide sequence data for
Brachyderes rugatus rugatus. Numbered circles refer to specific haplotypes (Table 1), and smaller filled circles represent unsampled or extinct
haplotypes. Grey filled circled denote haplotypes occurring in the three areas indicated on the map, collectively referred to as Olén.
between the geographic centres of clades should be the
same for all populations. Under a scenario of isolation by
distance, lower clade levels are expected to have small
positive distances between the geographic centres of the
clades that approach zero at higher clade levels. However,
under a scenario of secondary contact the average distance
is expected to either remain high or rise with clade level,
until a maximum should be reached at the clade level
where the fragmentation was inferred. Altos de Jedey does
indeed conform to a zone of secondary contact, exhibiting
an increasing average distance between geographic centres
proceeding from lower to higher nesting levels (NL):
NL 0 = 1.1 km, NL 1 = 3.6 km, NL 2 = 5.7 km, NL 3 = 7.7 km,
NL 4 = 9.4 km.
Discussion
Ancestral haplotypes and ancestral areas
The phylogeographic history of Brachyderes rugatus rugatus
on La Palma appears more complex than a simple extrapolation of the geological history of La Palma would
suggest. Our first prediction was that ancestral haplotypes
should predominantly occur in the northern shield, with
derived haplotypes featuring more on the El Bejenado and
Cumbre Vieja terrains. Coalescent theory predicts that
© 2006 Blackwell Publishing Ltd, Molecular Ecology, 15, 449–458
ancestral haplotypes will occur at high frequency, be
represented in the greatest number of populations, have
multiple connections to low frequency haplotypes, and be
located at the interior of a network (Crandall & Templeton
1993; Posada & Crandall 2001). None of the haplotypes
within our network conform to this definition. A number
of haplotypes occur at a frequency higher than one, but
only eight of these occur in more than one population
(Fig. 2), with only four of those having multiple connections to other haplotypes, and none of these can be
considered truly central within the network (Fig. 4). These
four haplotypes, 9, 39, 15 and 2, can only be considered
ancestral on a local scale — ancestral sequences of recent
regional population expansions.
The lack of an obvious ancestral sequence (or sequences)
under the above criteria can be reconciled with a population history involving geographic structure checkered by
regional population extinction and recolonization. Although
NCPA cannot explicitly test this hypothesis, the conclusions
of fragmentation, range expansion, secondary contact, and
two additional features of the network in Fig. 4 support
such a scenario. First, the network is composed of three
geographically distinct phylogroups (Fig. 3), indicating
some historical disjunction between these areas. Second,
the network itself is characterized by many missing internal
haplotypes (70%), and these are not randomly distributed
456 B . C . E M E R S O N E T A L .
with only 37% of tip haplotypes (level 0 clades) being connected to internal unsampled sequences. When looking
at level 3 clades, the percentage of missing intermediates
ranges from 40% (clade 3.7) to 85% (clade 3.4). Furthermore, grouping these level 3 clades into tip clades (3.1, 3.5,
3.7, 3.8) and internal clades (3.2, 3.3, 3.4, 3.6) reveals that
internal clades have more missing intermediates (72%) than
tip clades (59%). This indicates that rather than occurring
at higher frequency, the oldest of haplotypes are likely to
be rare or extinct.
Although the frequencies of ancestral haplotypes can be
expected to decrease through time under a scenario of population structure with regional extinction and recolonization, their ancestry will still be identified by their internal
placement within a network (Posada & Crandall 2001).
Although the exact root location of the network of Fig. 4
cannot be determined, clade 3.3 approximates the centre
of the network. Clade 3.3 contains 2 internal haplotypes, 53
from above Fuente Olén, and 49 from the geographically
proximate Montaña Tagoja (Fig. 1). Three other tip haplotypes within this clade (29, 48, 52) are also restricted to
either of these populations or the geographically intermediate
Fuente Olén. Looking at the phylogenetic relationships of
the remaining haplotypes from these three locations reveals
that, with the single exception of haplotype 27, all form an
inclusive set of connections around clade 3.3 (Fig. 3). The
genealogical and geographic unity of these 17 haplotypes,
combined with their interior location within the network,
suggests an ancestral area in the region of the sampling
locations Montaña Tagoja, Fuente Olén and above Fuente
Olén (from hereon referred to as Olén). Thus, consistent
with the greater antiquity of the northern shield, ancestral
haplotypes are found to predominate here, but in a
restricted area of the eastern flank of the shield.
Ancestral areas and range expansions
As part of our first hypothesis, we also predicted that the
newer Bejenado and Cumbre Vieja volcanic terrains would
possess more derived haplotypes, located terminally in a
haplotype network, than the northern shield terrain. Additionally we hypothesized that signatures of population
expansion should feature more in the newer southern
terrains than the older northern terrains. This is clearly not
the case, but can be reconciled with a more complex phylogeographic history of B. r. rugatus on La Palma than we
predicted. The presence of three distinct phylogroups
(Fig. 3) is clearly at odds with a scenario of a long-term
residency in the northern shield followed by a more recent
expansion into the southern terrains. Rather, the ancestral
area of Olén appears to have been the source of three
distinct range expansion events corresponding to the three
level 4 clades of Fig. 4, one into the northern shield (clade 4.3)
and two into the Cumbre Vieja terrain (clades 4.1 and 4.2).
Clade 4.3 is consistent with a history of past fragmentation followed by range expansion, and several features
suggest this expansion has occurred radially around the
Caldera de Taburiente, clockwise from Olén, to give rise to
phylogroup 3. A pattern of radial colonization through the
forest crowning La Caldera has previously been reported for
Brachyderes rugatus calvus on the Island of Gran Canaria
(Emerson et al. 2000). Clade 4.3 connects to ancestral haplotypes from Olén, and its most interior clade, 2.11 includes
one of these haplotypes that also occurs in Aridane
(Fig. 2A). The three most closely related descendant haplotypes of clade 2.11 are restricted to the western localities of
Puntagorda (21, 22) and Jesus (64) suggesting these areas
were colonized from Olén through Aridane. Figure 2(B–E)
shows haplotypes occurring in more than one population
in the northern shield, as well as any sequences that have
descended from these, and where it is known, the geographic location of the sequence immediately ancestral in
the network. In the three instances where the ancestral
location can be determined it is to the extreme west of the
shield, indicating subsequent colonization toward the east
across the top of the northern shield.
Sequence divergence rate estimates for invertebrate
mtDNA (De Salle et al. 1987; Brower 1994) approximate to
2.15% of sequence divergence per million years (Myr)
(1.08% of mutational change per lineage per Myr), and a
study of the colonization sequence of the four Brachyderes
subspecies on the Canary Islands found their mtDNA mutation rate to be in accord with this (Emerson et al. 2000). The
most recent common ancestral (MRCA) sequence of phylogroup 3 occurs in clade 1.34 (Fig. 4). This northern shield
lineage is represented by 26 haplotypes with divergences
from the ancestral haplotype ranging from one to eight
mutations. To estimate a date for the MRCA of phylogroup
3 one should consider all extant haplotypes descending
from the MRCA, as each one represents the time interval
between the present and the MRCA. Among the 26 haplotypes descending from the MRCA, the average divergence
from the MRCA is 0.72%, which equates to 0.66 Ma with a
standard error of 0.24 Ma.
Clade 4.2 is consistent with contiguous range expansion
and unites phylogroup 1 (Fig. 3) with the ancestral area of
Olén. Although the NCPA did not detect fragmentation,
the large number of missing haplotypes connecting the
haplotypes of phylogroup 1 to those from Olén (Fig. 4),
combined with the presence of phylogroup 2 in the geographically intermediate area, suggests clade 4.2 was once
continuously distributed but suffered extinction in the
geographically intermediate area now occupied by phylogroup 2. The phylogeographic pattern and genetic divergences of clade 4.2 are consistent with the speculation of
Carracedo & Day (2002) that the young Cumbre Vieja
volcanic terrains of 0.12 Ma may possibly cover much older
terrains. The most recent common ancestral sequence of
© 2006 Blackwell Publishing Ltd, Molecular Ecology, 15, 449–458
P H Y L O G E O G R A P H Y O F B R A C H Y D E R E S R U G A T U S 457
phylogroup 1 occurs in clade 1.15 (Fig. 4), and among the
12 haplotypes descending from the MRCA, the average
divergence from the MRCA is 0.75%, which equates to 0.69
(± 0.2) Ma. This estimate is consistent with the existence of
B. r. rugatus, and thus forests of Pinus canariensis, in the
southern half of La Palma prior to the Cumbre Vieja eruptive period, supporting the conjecture of Carracedo & Day
(2002) of the existence of older, but now buried, terrains in
the south. Further to this, the distribution of genotypes in
this southern region (Fig. 2F) suggests that the area of
Lomo María is the likely point of origin of recent range
expansion in this southern area. It seems likely that the
recent and extensive volcanic and erosional events of the
Cumbre Vieja terrain (Fig. 1) would have contributed to
the isolation and restriction of a population in the southern
part of the island.
Clade 4.1 is consistent with a history of past fragmentation
followed by range expansion, and this expansion would
appear to be from Olén, through Aridane and Bejenado,
and then south. Clade 4.1 connects to ancestral haplotypes
from Olén, and its most interior clade, 3.2, is also exclusively composed of 10 haplotypes from this area. The
descendant clade 2.2 juxtaposing clade 3.2 is composed of
haplotypes occurring only in Aridane and El Bejenado,
while the tip clade 2.1 includes haplotypes from these two
locations as well as all haplotypes from the more southern
locations of Montaña de la Venta, Altos de Jedey and El
Jable. Figure 2G supports the range expansion into these
southern populations to have occurred out from the area
of Aridane or El Bejenado. The time of establishment of
B. r. rugatus in the Bejenado terrain (Fig. 1) is consistent
with this being at or near the end of the main Bejenado
eruptive period from 0.56 to 0.49 Ma (Carracedo & Day
2002). The MRCA of the Aridane and El Bejenado haplotypes in clade 3.1 is the interior unsampled haplotype of
clade 1.4, and among the 13 haplotypes descending from
the mrca, the average divergence from the MRCA is 0.47%,
which equates to 0.43 (± 0.14) Ma. It would appear that the
timing of the establishment of B. r. rugatus from phylogroup 2 within the Cumbre Vieja terrain (Fig. 1) is more
recent than that for phylogroup 1, with only three closely
related haplotypes (1, 2 and 35) in these areas of Montaña
de la Venta, Altos de Jedey and El Jable.
expansions have met, and this is supported by the NCPA.
From the phylogeographic pattern it is likely that a further
area of secondary contact exists in the northern shield
between phylogroups 2 and 3. From the clockwise radial
range expansion of clade 4.3 we predict that further
sampling between Olén and Casas del Monte (Fig. 1) will
identify areas with ancestral haplotypes typical of the Olén
area, occurring together with tip haplotypes from clade 4.3.
Range expansions and secondary contact
Fig. 5 Inferred patterns of range expansion within the island of La
Palma for Brachyderes rugatus rugatus. Three range expansions
have occurred, each originating from Olén. The broken line 1
indicates an expansion into the Cumbre Vieja terrain, followed by
extinction and then subsequent range expansion from the area of
Lomo María beginning approximately 0.66 –0.88 million years ago
(Ma), indicated by solid arrowed lines. Line 2 denotes a range
expansion into the Bejenado terrain approximately 0.33–0.56 Ma,
from where a second range expansion into the Cumbre Vieja
occurred approximately 0.25 Ma. Line 3 denotes range expansion
into the northern shield occurring within the last 1.07 million years.
Our analyses have revealed an area of secondary contact
between two range expansions of phylogroups 1 and 2 in
the Cumbre Vieja terrain of La Palma. An isolated population in the southern part of this region has expanded its
range out from the area of Lomo María, while another
range expansion has occurred from Olén, through the
Bejenado terrain, and then toward the south. We have
identified Altos de Jedey as an area where these two
© 2006 Blackwell Publishing Ltd, Molecular Ecology, 15, 449–458
Conclusion
Our analyses reveal a more complicated phylogeographic
history for Brachyderes rugatus rugatus within the island of
La Palma than initial predictions generated from data on the
geological history of the island. Rather than a simple demographic involving an origin in the northern shield followed
by a more recent expansion into the Cumbre Vieja region,
a series of range expansions have occurred, one into the
northern shield and two into the Cumbre Vieja (Fig. 5). All
three of these range expansions show a common point of
origin from the area of Olén, and is tempting to speculate
that these have tracked range expansions of the host species
Pinus canariensis. However, definitive evidence for this
458 B . C . E M E R S O N E T A L .
requires complementary phylogeographic studies for
P. canariensis itself or other species facultatively associated
with P. canariensis such as Rhyncolus crassicornis (Coleoptera,
Curculionidae), Buprestis bertheloti (Coleoptera, Buprestidae),
Temnoscheila pini (Coleoptera, Trogossitidae), Leipaspis pinicola
(Coleoptera, Trogossitidae) or Orsillus pinicanariensis
(Hemiptera, Lygaeidae).
Our analyses demonstrate the utility of network-based
analyses of intraspecifc DNA sequence variation for testing
phylogeographic predictions on active volcanic islands, with
geological data providing some explanatory power for the
phylogeographic patterns found. But further to this previous geological speculation of a much older age for the
Cumbre Vieja region has gained phylogeographic corroboration from our analyses. Both this study and recent analyses
of Galápagos giant tortoises on the island of Isabela by
Beheregaray et al. (2003), demonstrate the reciprocal illumination of geological and phylogeographic history.
Acknowledgements
We are grateful to the Cabildo Insular de La Palma for their permission to collect and logistical support, and to Miguel de Navascúes
for assistance with collecting. We also thank Antonio Camacho
and Rafael García for providing some specimens. We also thank
Godfrey Hewitt and three anonymous referees for helpful comments on the manuscript. This work was supported by BBSRC
grant 83/G17530 (B.E.).
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Brent Emerson is a lecturer in Evolutionary Biology at the
University of East Anglia with interests in the application of
molecular data to interpret phylogenetic history and population
dynamics, particularly within island ecosystems. Shaun Forgie is
a systematic entomologist with interests in the application of
molecular markers to applied questions. Sara Goodacre is a postdoctoral researcher interested in studying patterns of genetic variation
within and among species that are the result of colonization,
adaptation and diversification. Pedro Oromí is a Professor Titular
at the University of La Laguna, his main area of research is the
systematics and biogeography of Macaronesian beetles.
© 2006 Blackwell Publishing Ltd, Molecular Ecology, 15, 449–458