Welcome to the GDRCyc Database in GDR (Genome Database for Rosaceae). The following Cyc databases were constructed using PathwayTools and using gene models from the specified whole genome assemblies. There has been no manual curation of the Cyc database. (Video Tutorial)
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Strawberry (Fragaria x ananassa) Fragaria x ananassa cv. Camarosa v1.0.a1 genome assembly (Edger et al, 2019)PathwayTools version 23.5 |
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Wild Strawberry (Fragaria vesca) Fragaria vesca ssp. Vesca cv. Hawaii v4.0.a2 genome assembly (Li et al, 2019)PathwayTools version 23.0 |
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Apple (Malus x domestica 'Honeycrisp') Malus x domestica 'Honeycrisp' v1.1.a1 genome assembly (Khan et al, 2022)PathwayTools version 26.0 |
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Apple (Malus x domestica HFTH1) Malus x domestica HFTH1 v1.0 genome assembly (Zhang et al, 2019)PathwayTools version 26.0 |
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Apple (Malus x domestica Genome v1.0 NCBI annotation) Malus x domestica Genome v1.0 NCBI annotation (Velasco et al, 2010 with NCBI annotation)PathwayTools version 26.0 |
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Apple (Malus x domestica Borkh. vs. Golden Delicious double-haploid) Malus x domestica GDDH13 v1.1 genome assembly (Daccord et al, 2017)PathwayTools version 26.0 |
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Apple (Malus domestica Borkh. anther-derived tri-haploid Hanfu) Malus domestica Borkh. anther-derived tri-haploid Hanfu line (HFTH1) v1.0 genome assembly (Zhang et al, 2019)PathwayTools version 23.0 |
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Apple (Malus x domestica Borkh. cv. Golden Delicious) Malus x domestica Borkh. cv. Golden Delicious v1.0 genome assembly (Velasco et al, 2010)PathwayTools version 21.0 |
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Prunus persica cv. Lovell v2.0.a1 genome assembly (Verde et al, 2017)
PathwayTools version 23.0 |
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Prunus avium variety Satonishiki v1.0.a1 genome assembly (Shirasawa et al, 2017)
PathwayTools version 23.0 |
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Prunus dulcis Texas Almond v2.0 genome assembly (Alioto et al, 2020)
PathwayTools version 26.0 |
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Pear (Pyrus communis L. d'Anjou) Pyrus communis L. d'Anjou v2.3.a1 genome assembly (Yocca et al, 2024)PathwayTools version 26.0 |
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Pear (Pyrus communis L. Barlett) Pyrus communis L. double-haploid Bartlett (BDH) v2.0 genome assembly (Linsmith et al, 2019)PathwayTools version 23.0 |
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Pyrus bretschneideri cultivar DangshanSuli (DS) v1.1 genome assembly (Xue et al, 2018)
PathwayTools version 23.0 |
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Black Raspberry (Rubus occidentalis) Rubus occidentalis selection ORUS 4115-3 v3.0 genome assembly (VanBuren et al, 2018)PathwayTools version 23.0 |
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Rosa chinensis Old Blush homozygous genome v2.0 (Raymond et al, 2018)
PathwayTools version 23.0 |
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Rosa chinensis Whole Genome v1.0 Assembly & Annotation (Hibrand et al, 2018)
PathwayTools version 23.0 |