Summary:
This Pathway/Genome Database (PGDB) was generated by the PathoLogic
[Karp16,
Karp11] component of Pathway Tools software version 23.0 and MetaCyc
[Caspi18] version 23.0 on 20-Nov-2019 14:03:20.
Sequence Source: selection ORUS 4115-3, genome v3.0
Taxonomic Lineage: cellular organisms, Eukaryota, Viridiplantae, Streptophyta, Streptophytina, Embryophyta, Tracheophyta, Euphyllophyta, Spermatophyta, Magnoliopsida, Mesangiospermae, eudicotyledons, Gunneridae, Pentapetalae, rosids, fabids, Rosales, Rosaceae, Rosoideae, Rosoideae incertae sedis, Rubus, Rubus occidentalis
Synonyms: black raspberry, non Rubus occidentalis H.Lev., nom. illeg.
Unification Links: NCBI-Taxonomy:75079
| Replicon | Total Genes | Protein Genes | RNA Genes | Pseudogenes | Size (bp) | NCBI Link |
| Ro06 | 6,096 | 6,096 | 0 | 0 | 50,857,734 | |
| Ro03 | 5,013 | 5,013 | 0 | 0 | 43,770,452 | |
| Ro07 | 4,572 | 4,572 | 0 | 0 | 41,284,720 | |
| Ro05 | 4,602 | 4,602 | 0 | 0 | 41,098,493 | |
| Ro02 | 4,818 | 4,818 | 0 | 0 | 40,759,723 | |
| Ro04 | 4,476 | 4,476 | 0 | 0 | 38,749,748 | |
| Ro01 | 3,709 | 3,709 | 0 | 0 | 34,303,927 | |
| Total: | 33,286 | 33,286 | 0 | 0 | 290,824,797 |
| Genes: | 33,286 | ||
| Pathways: | 443 | ||
| Enzymatic Reactions: | 3,446 | ||
| Transport Reactions: | 25 | ||
| Polypeptides: | 33,287 | ||
| Protein Complexes: | 0 | ||
| Enzymes: | 5,801 | ||
| Transporters: | 196 | ||
| Compounds: | 2,285 | ||
| tRNAs: | 0 |
Genetic Code Number:
1 -- Standard
PGDB Unique ID: 1XR2