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Comment: DESeq2 analysis with transcript counts
by
kahunroleh
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0
Thanks for sharing the solution. I also face this problem.
[nulls][1]
[1]: https://nulls-brawl-apk.fr/
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
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kahunroleh
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0
Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…
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Martijn
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thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…
Comment: plyranges: find exact GRanges match keeping metadata columns
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alexis.weinreb
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Thank you, this does clarify the available options.
Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
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If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…
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