User profiles for James Nunez
[HTML][HTML] Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing
A general approach for heritably altering gene expression has the potential to enable many
discovery and therapeutic efforts. Here, we present CRISPRoff—a programmable epigenetic …
discovery and therapeutic efforts. Here, we present CRISPRoff—a programmable epigenetic …
Integrase-mediated spacer acquisition during CRISPR–Cas adaptive immunity
Bacteria and archaea insert spacer sequences acquired from foreign DNAs into CRISPR
loci to generate immunological memory. The Escherichia coli Cas1–Cas2 complex mediates …
loci to generate immunological memory. The Escherichia coli Cas1–Cas2 complex mediates …
Cas1–Cas2 complex formation mediates spacer acquisition during CRISPR–Cas adaptive immunity
The initial stage of CRISPR–Cas immunity involves the integration of foreign DNA spacer
segments into the host genomic CRISPR locus. The nucleases Cas1 and Cas2 are the only …
segments into the host genomic CRISPR locus. The nucleases Cas1 and Cas2 are the only …
Foreign DNA capture during CRISPR–Cas adaptive immunity
Bacteria and archaea generate adaptive immunity against phages and plasmids by integrating
foreign DNA of specific 30–40-base-pair lengths into clustered regularly interspaced …
foreign DNA of specific 30–40-base-pair lengths into clustered regularly interspaced …
[HTML][HTML] Biology and applications of CRISPR systems: harnessing nature's toolbox for genome engineering
Bacteria and archaea possess a range of defense mechanisms to combat plasmids and viral
infections. Unique among these are the CRISPR-Cas (clustered regularly interspaced short …
infections. Unique among these are the CRISPR-Cas (clustered regularly interspaced short …
A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response
Functional genomics efforts face tradeoffs between number of perturbations examined and
complexity of phenotypes measured. We bridge this gap with Perturb-seq, which combines …
complexity of phenotypes measured. We bridge this gap with Perturb-seq, which combines …
Pervasive functional translation of noncanonical human open reading frames
Ribosome profiling has revealed pervasive but largely uncharacterized translation outside
of canonical coding sequences (CDSs). In this work, we exploit a systematic CRISPR-based …
of canonical coding sequences (CDSs). In this work, we exploit a systematic CRISPR-based …
PLFS: A checkpoint filesystem for parallel applications
…, B McClelland, P Nowoczynski, J Nunez… - Proceedings of the …, 2009 - dl.acm.org
Parallel applications running across thousands of processors must protect themselves from
inevitable system failures. Many applications insulate themselves from failures by …
inevitable system failures. Many applications insulate themselves from failures by …
[HTML][HTML] CRISPR immunological memory requires a host factor for specificity
Bacteria and archaea employ adaptive immunity against foreign genetic elements using
CRISPR-Cas systems. To generate immunological memory, the Cas1-Cas2 protein complex …
CRISPR-Cas systems. To generate immunological memory, the Cas1-Cas2 protein complex …
Molecular basis for H3K36me3 recognition by the Tudor domain of PHF1
The PHD finger protein 1 (PHF1) is essential in epigenetic regulation and genome maintenance.
Here we show that the Tudor domain of human PHF1 binds to histone H3 trimethylated …
Here we show that the Tudor domain of human PHF1 binds to histone H3 trimethylated …