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WO2022156764A1 - 一种降解脱氧核糖核酸(dna)聚合酶的化合物及其用途 - Google Patents

一种降解脱氧核糖核酸(dna)聚合酶的化合物及其用途 Download PDF

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WO2022156764A1
WO2022156764A1 PCT/CN2022/073159 CN2022073159W WO2022156764A1 WO 2022156764 A1 WO2022156764 A1 WO 2022156764A1 CN 2022073159 W CN2022073159 W CN 2022073159W WO 2022156764 A1 WO2022156764 A1 WO 2022156764A1
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optionally
compound
dna
lgp
polymerase
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PCT/CN2022/073159
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English (en)
French (fr)
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苏向东
鲁凤民
齐非
温天乐
白明杰
王金戌
Original Assignee
泰比棣医药科技(石家庄)有限公司
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Priority to CN202280011048.5A priority Critical patent/CN116802180B/zh
Priority to US18/273,212 priority patent/US20240299557A1/en
Publication of WO2022156764A1 publication Critical patent/WO2022156764A1/zh
Priority to ZA2023/07894A priority patent/ZA202307894B/en

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    • Y02A50/30—Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Definitions

  • the invention relates to the field of biomedicine, in particular to a class of protein degradation targeting chimera (PROTAC) compounds, the structure of which can be represented by the general formula LGP-LK-LGE, wherein LGP is a ligand that binds to deoxyribonucleic acid (DNA) polymerase LGE is a ligand that binds to E3 ubiquitin ligase, and LK is a bridge linking the above two ligands.
  • LGP is a ligand that binds to deoxyribonucleic acid (DNA) polymerase
  • LGE is a ligand that binds to E3 ubiquitin ligase
  • LK is a bridge linking the above two ligands.
  • DNA deoxyribonucleic acid
  • DNA polymerase catalyzes the polymerization of nucleotide monomers using DNA or RNA as a template to form long-chain polymer nucleic acids.
  • the regulation of DNA polymerase is an important means to influence and interfere with DNA replication.
  • Viral infection belongs to multiple diseases, including hepatitis, acquired immunodeficiency syndrome (AIDS), severe acute respiratory syndrome (SARS), etc., and its common feature is that it is accompanied by a high degree of viral DNA synthesis.
  • AIDS acquired immunodeficiency syndrome
  • SARS severe acute respiratory syndrome
  • viral endogenous polymerase As a key enzyme in DNA synthesis, viral endogenous polymerase is an important component of the maintenance life cycle of many viruses, including hepatitis virus, human immunodeficiency virus and influenza virus.
  • the viral endogenous DNA polymerase is a key target for the development of antiviral drugs.
  • Hepatitis B virus is a DNA virus belonging to the family hepadnavividae. HBV can cause acute and chronic hepatitis, and HBV infection is also the main cause of liver cancer and liver cirrhosis. According to the statistics of the World Health Organization, about 2 billion people in the world have been infected with hepatitis B virus, of which more than 350 million people are chronically infected, and about 786,000 people die every year from liver failure, liver cirrhosis and primary hepatocellular carcinoma caused by HBV infection. (HCC). The study of the molecular biological properties of HBV has provided help for the search for drugs based on new mechanisms of action.
  • the HBV genome is partially double-stranded circular DNA, the length of the negative chain is about 3.2kb, and the length of the positive chain is about 50-100% of the negative chain. Its genome contains four open reading frames (ORFs), corresponding to genes encoding polymerase (P protein), nuclear protein (C protein), surface protein (S protein), and X protein. Among the proteins expressed by these HBV genes, polymerase, surface protein and nucleoprotein are structural proteins, while X protein has regulatory functions.
  • the HBV polymerase gene accounts for 80% of the entire viral genome and overlaps with the coding regions of other genes. Depending on the genotype, it can encode a P protein consisting of 832 to 845 amino acids, namely DNA polymerase (Seeger C, Mason WS). .
  • Hepatitis B virus biology Microbiol Mol Biol Rev. 2000;64(1):51-68.). This gene plays multiple roles in viral genome replication.
  • the expressed DNA polymerase (P protein) is also involved as a necessary structural component along with capsid protein, pre-genomic RNA and cytokines. Viruses are packaged to form immature virus particles.
  • HBV DNA polymerase acts in hepatocytes to synthesize DNA and attach to short chains to form a complete double helix of the HBV genome, and further generates pre-genome mRNA, nuclear protein, surface protein and regulatory protein (X protein) through the action of RNA polymerase.
  • mRNA which acts as a messenger and participates in the translation and synthesis of viral proteins.
  • terminal proteins have multiple functions, mainly as primers when pregenomic RNA reverse-transcribes negative-strand DNA. Terminal proteins also hinder the activation of interferon-inducible genes in host cells and inhibit the effect of interferon.
  • DNA polymerases have important functions in the production of viral genomes, forming structures called replicasomes with nucleoproteins and pregenomic mRNAs. When the replicator is formed, the negative DNA strand is synthesized by the reverse transcription action of HBV polymerase, while the positive DNA strand is made by the action of DNA-dependent DNA polymerase, which in turn produces pregenomic mRNA.
  • the activity of ribonuclease H is required to remove RNA in the RNA-DNA hybrid, leaving single-stranded DNA; the small fragments of RNA formed by degradation serve as primers for positive-strand DNA synthesis.
  • the amino acid homology analysis of the reverse transcription region of HBV DNA polymerase found that it contains five main functional regions, which are A region, B region, C region, D region and E region.
  • the A, C and D regions are the binding regions of enzymes and nucleoside triphosphates, while the B and E regions are the RNA template and primer positioning regions.
  • the catalytic domain of DNA polymerase is located in the YMDD structure of the C region. These five regions contain highly conserved amino acid sequences, which are necessary to maintain reverse transcription activity.
  • nucleoside compounds with the function of inhibiting reverse transcription of the polymerase are currently the main drugs for the treatment of HBV infection. These include Lamivudine, Telbivudine, Entecavir, Adefovir Dipivoxil, Tenofovir disoproxil and Tenofovir fumarate Nucleic acid analogs such as Tenofovir alafenamide fumarate.
  • nucleoside analogs are incorporated into the DNA chain of the polymerase, inhibiting the reverse transcription activity of the HBV P protein, and irreversibly terminating the extension and synthesis of the new HBV DNA chain of the progeny virus, thereby preventing the virus from multiplying.
  • nucleoside analogs had no significant effect on cccDNA and did not reduce pre-genomic RNA and mRNA, indicating that DNA-templated transcription and viral protein translation were not affected by the drug.
  • the therapeutic methods targeting the reverse transcription function of polymerase can only inhibit the reproduction of the virus, but cannot completely eliminate HBV and achieve the purpose of curing hepatitis B.
  • nucleoside drugs also have problems of drug resistance and rebound after drug withdrawal.
  • HBV DNA polymerase P protein
  • P protein HBV DNA polymerase
  • the ubiquitin-proteasome pathway is an efficient and specific protein degradation process that regulates the degradation of most proteins in cells. Protein degradation by ubiquitination plays an extremely important role in maintaining the levels of various proteins in cells, involving almost all life activities such as regulation of cell cycle, proliferation, apoptosis, metastasis, gene expression, and signal transmission.
  • Ubiquitin is a highly conserved protein ubiquitous in eukaryotic cells, consisting of 76 amino acids. Ubiquitinated proteins can be transported to the 26S proteasome or entered into the lysosome for digestion and degradation.
  • ubiquitin activating enzyme ubiquitin activating enzyme
  • E1 the activated ubiquitin
  • E2 the activated ubiquitin
  • E3 ubiquitin ligase Ubiquitin ligase
  • the ubiquitin molecule is covalently linked to the substrate protein by isomeric peptide bonds.
  • the specificity of ubiquitin-mediated protein degradation depends on the specific recognition of substrate proteins by ubiquitin ligase E3.
  • Proteolytic Targeting Chimera utilizes the intracellular ubiquitin-proteasome system to degrade specific proteins.
  • the technical feature is that the small molecule ligand that can bind to the target protein and the ligand of E3 ubiquitin ligase are connected through a bridge fragment to form a bifunctional compound.
  • the ligands at both ends of the PROTAC molecule are caused to bind to the target protein and E3 ubiquitin ligase at the same time, forming a target protein-PROTACs-E3 ligase ternary complex, thereby enabling Target proteins are ubiquitinated and degraded by the proteasome system.
  • PROTAC technology has the advantages that it can be used for the degradation of refractory proteins, the degradation efficiency is strong, and the catalytic degradation can be maintained at low concentrations. At the same time, because the protein degradation mode of this technology is repeated iterations, it has better tolerance than traditional drugs in the case of target protein mutation.
  • PROTAC The technical difficulty of PROTAC is that the target protein ligand, the conformation and site of the E3 ubiquitin ligase ligand, the modification of the length and composition of the bridge, and the concentration will all affect the formation and stability of the ternary complex. , making it more challenging to control.
  • the purpose of the present invention is to Provide a class of protein degradation targeting chimeras (PROTAC), which can specifically degrade the endogenous DNA polymerase (P protein) of the virus, thereby blocking the replication of the virus in multiple links and achieving the purpose of treating viral infections .
  • PROTAC protein degradation targeting chimeras
  • the present invention relates to the field of biomedicine, in particular to a class of compounds or their pharmaceutically acceptable salts, solvates, hydrates, polymorphs, tautomers, geometric isomers, isotopic labels, metabolites product or prodrug.
  • Such compounds prevent virus replication by degrading the deoxyribonucleic acid (DNA) polymerase that inhibits the virus, kill the virus, and then play the role of treating and intervening virus infectious diseases.
  • DNA deoxyribonucleic acid
  • This type of compound belongs to the protein degradation targeting chimera (PROTAC), and its structure can be represented by the general formula LGP-LK-LGE, where LGP is a ligand that binds to deoxyribonucleic acid (DNA) polymerase, and LGE is a ligand that binds to E3 ubiquitin ligase.
  • Ligand, LK is a bridge linking the above two ligands (Linker), that is, a combination of molecular functional groups.
  • the present invention provides a new class of deoxyribonucleic acid (DNA) polymerase degradation inhibitors, which can effectively interfere with virus survival and replication, and treat diseases caused by virus infection, including hepatitis B and secondary diseases, acquired Immunodeficiency Syndrome.
  • a class of protein degradation targeting chimeras with the general formula LGP-LK-LGE provided by the present invention can effectively degrade DNA polymerase (P protein) in HBV-infected cells, and can effectively inhibit HBV replication.
  • the present invention is achieved through the following aspects:
  • the first aspect of the present invention provides a bifunctional compound, which is a targeted protein degradation chimera, and its structural formula is as follows: LGP-LK-LGE, wherein LGP is a deoxyribonucleic acid (DNA) polymerase binding Ligand, LGE is a ligand that binds to E3 ubiquitin ligase, and LK is a bridge linking the above two ligands LGP and LGE.
  • LGP is a deoxyribonucleic acid (DNA) polymerase binding Ligand
  • LGE is a ligand that binds to E3 ubiquitin ligase
  • LK is a bridge linking the above two ligands LGP and LGE.
  • the compound provided above is characterized in that: the compound represented by the structural formula LGP-LK-LGE also includes its pharmaceutically acceptable salts, solvates, hydrates, polymorphs, tautomers , geometric isomers, isotopic labels, metabolites or prodrugs.
  • the compound LGP-LK-LGE provided above is characterized in that: the ligand LGP that binds to deoxyribonucleic acid (DNA) polymerase can be any of the following structures, or the phosphorylation or double phosphorylation of its hydroxyl group , triphosphorylated products:
  • the compound LGP-LK-LGE provided above is characterized in that the bridge LK is linked to LGP through chemical bonds; it is also characterized in that: the LK is linked to the base of LGP or to the cyclopentane of LGP On the sugar unit; further preferably, the linking position is the position shown in any of the following structures:
  • the ligand LGE of the compound LGP-LK-LGE provided above that binds to the E3 ubiquitin ligase is an optionally substituted structure shown below:
  • R 1 is optionally hydrogen, oxygen or optionally C1-6 alkyl, C1-6 haloalkyl or alkoxy
  • R 4 is optionally C1-6 Alkyl, C1-6 haloalkyl, or R 5 CO-
  • R 5 is optionally C1-6 alkyl, C1-6 haloalkyl
  • Y is optionally C, O, S, NR 6
  • R 6 is optionally C1 -6 alkyl, C1-6 haloalkyl or alkoxy.
  • the above-mentioned compound LGP-LK-LGE linking LGP and LGE two parts of the bridge chain LK is an optional structure shown below:
  • the zigzag line represents the position where the bridge chain LK and LGP or LGE are connected by chemical bonds; m is optionally a natural integer 0-5; n is optionally a natural integer 0-25; p is optionally a natural integer 0-4; q is optionally a natural integer Selected as a natural integer 0-20; r optionally as a natural integer 1-3; s optionally as a natural integer 1-5.
  • X is optionally C, O, S, NR 2 ; R 2 is optionally C1-6 alkyl, C1-6 haloalkyl or alkoxy.
  • the compound LGP-LK-LGE provided above is an optional structure shown below:
  • the compound LGP-LK-LGE provided above is an optional structure shown below:
  • the compound LGP-LK-LGE provided above is an optional structure shown below:
  • the compound LGP-LK-LGE provided above is the preferred structure shown below:
  • the eleventh aspect of the invention a pharmaceutical composition is provided, which is characterized by comprising the compound according to any one of the first aspect of the invention to the tenth aspect of the invention.
  • the pharmaceutical composition of the eleventh aspect of the invention is characterized in that it further comprises a pharmaceutically acceptable carrier, excipient, diluent, adjuvant, vehicle or a combination thereof.
  • the thirteenth aspect of the invention the pharmaceutical composition of the eleventh aspect of the invention is characterized in that the administration mode is selected from nasal administration, inhalation, topical, oral, intramuscular, subcutaneous, transdermal, intraperitoneal, intramuscular At least one of extramembranous, intrathecal and intravenous routes.
  • the fourteenth aspect of the invention the preparation method of the compound Ming described in any one of the first aspect of the invention to the tenth aspect of the invention, it is characterized in that: the compound (I) can be optionally prepared from the following two synthetic routes:
  • compound (VI) can be prepared by following synthetic route:
  • the fifteenth aspect of the invention the compound according to any one of the first aspect of the invention to the tenth aspect of the invention or the pharmaceutical composition according to the eleventh aspect of the invention, characterized in that it can degrade and inhibit deoxyribonucleic acid (DNA) polymerase.
  • DNA deoxyribonucleic acid
  • the sixteenth aspect of the invention the pharmaceutical composition of the eleventh aspect of the invention is characterized in that it can preferentially degrade and inhibit the endogenous deoxyribonucleic acid (DNA) polymerase of the virus.
  • DNA deoxyribonucleic acid
  • the pharmaceutical composition of the eleventh aspect of the invention is characterized in that it can more preferably degrade and inhibit the endogenous deoxyribonucleic acid (DNA) of viruses belonging to the family Hepadnaviridae. polymerase.
  • DNA deoxyribonucleic acid
  • the eighteenth aspect of the invention the pharmaceutical composition of the eleventh aspect of the invention is characterized in that it can more preferably degrade the endogenous deoxyribonucleic acid (DNA) polymerase of the hepatitis B virus virus.
  • DNA deoxyribonucleic acid
  • the nineteenth aspect of the invention the compound according to any one of the first aspect of the invention to the tenth aspect of the invention or the pharmaceutical composition of the eleventh aspect of the invention inhibits deoxyribonucleic acid (DNA) polymerization during degradation Use in enzymatic processes.
  • DNA deoxyribonucleic acid
  • the twentieth aspect of the invention the compound according to any one of the first aspect of the invention to the tenth aspect of the invention or the pharmaceutical composition of the eleventh aspect of the invention is used in the preparation of degradation-inhibiting deoxyribonucleic acid (DNA) Use in polymerase drugs.
  • DNA degradation-inhibiting deoxyribonucleic acid
  • the twenty-first aspect of the invention the compound according to any one of the first aspect of the invention to the tenth aspect of the invention or the pharmaceutical composition according to the eleventh aspect of the invention is used for treatment, prevention or diagnosis and deoxygenation Application in various diseases related to ribonucleic acid polymerase, including but not limited to viral infectious diseases and secondary diseases caused by viral infection, said viral infectious diseases are caused by hepatitis B virus, human immunodeficiency Virus, HCV, HDV, HEV, Ebola virus, SARS virus, COVID19 infection, the secondary diseases include but are not limited to: liver cirrhosis, liver fibrosis, liver cancer.
  • the twenty-second aspect of the invention a cell line Huh7-HBP that simultaneously expresses LgBiT and HiBiT and highly expresses the HBP gene, characterized in that it has the HBP gene, and is preferably prepared by the following method:
  • the twenty-third aspect of the invention the use of the cell line Huh7-HBP according to the twenty-second aspect of the invention in determining the content of viral DNA polymerase in cells.
  • Fig. 3 the high performance liquid phase chromatogram of the compound (I) of the present invention
  • Figure 7 The effect of compound (I) (TPD00203) on preventing virus replication in HepG2.2.15 cells (7 days);
  • Figure 8 The effect of compound (I) (TPD00203) in preventing viral replication in HepAD38 cells (7 days);
  • FIG. 10 36-48 hours experiment on the degradation of P protein by compound (I) (TPD00203) in Huh7 cells overexpressing Flag-polymerase;
  • FIG. 11 30-36 hours experiment on the degradation of P protein by compound (I) (TPD00203) in Huh7 cells overexpressing Flag-polymerase;
  • Figure 12 Plasmid sequence and map PLVX-HBP-HiBiT-Puro;
  • Figure 13 Plasmid sequence and map pCDH-CMV-LgBiT-EF1a-Neo;
  • FIG. 14 HBP protein degradation by compound (I) in Huh7-HBP cell line.
  • the present invention provides general and specific descriptions of the materials and experimental methods used in the experiments. Although many of the materials used and methods of operation for the purposes of the present invention are known in the art, the present invention is described herein in as much detail as possible. In the following, unless otherwise specified, the materials used and the methods of operation are well known in the art.
  • Example 1 Synthesis and structural confirmation of compound (I) targeting DNA polymerase degradation.
  • the target compound (I, TPD00203) was prepared via the following synthetic route:
  • reaction solution was reacted at room temperature for 12 hours. Water was added The reaction was quenched, extracted twice with DCM, washed twice with water, dried and filtered over anhydrous sodium sulfate, the organic phase was spin-dried and the crude product was separated by preparative HPLC to obtain 230 mg of compound 5 (yield: 39%).
  • the structure and purity of the target compound (I, TPD00203) were confirmed by nuclear magnetic resonance spectroscopy, mass spectrometry and high performance liquid chromatography, and high performance liquid chromatography confirmed that the purity of the expected compound (I, TPD00203) was higher than 95% (see Figure 1 to Figure 3).
  • the target compound (VI) is prepared via the following synthetic route
  • reaction solution was added to ice water (30 mL) and extracted with ethyl acetate (20 mL x 2). The organic layer was dried over Na 2 SO 4 and concentrated. TLC plate was used to obtain compound 12 (230 mg, purity 95%) as a yellow oil. , the yield is 70%).
  • the reaction solution was prepared and purified by high pressure liquid phase to obtain a white solid (VI, 30 mg, purity 96%, yield 14%).
  • the structure and purity of the target compound (VI) were confirmed by nuclear magnetic resonance spectroscopy, mass spectrometry and high performance liquid chromatography, and high performance liquid chromatography confirmed that the purity of the expected compound (VI) was higher than 95% (see Figure 4 to Figure 6).
  • In vitro cell model 1 HepG2 cells transfected with hepatitis B virus (HBV), namely HepG2 2.2.15 cells.
  • HBV hepatitis B virus
  • In vitro cell model 2 Stable toxigenic HepAD38 cells.
  • HepG2.2.15 and stable toxigenic HepAD38 cells were divided into six experimental groups.
  • the number of cells in each well was 7 ⁇ 10 4 , and the amount of medium in each well was 500 ⁇ l.
  • the first group was a blank control, the second group was a positive control, and 3.75nM ETV was added; the third to sixth groups were added with 3.75nM, 100nM, 5 ⁇ M and 100 ⁇ M compound (I, TPD00203).
  • the supernatant was collected on the 3rd day after dosing and the HBV DNA level in the supernatant was detected. On day 7, the supernatant was collected again and the cells were pelleted, and the level of HBV DNA in the supernatant was detected.
  • ETV and TPD00203 are 4 dose groups of 10nM, 100nM, 1 ⁇ M, 10 ⁇ M.
  • the 7-day experimental results showed that both ETV and TPD00203 could significantly inhibit virus replication at all tested dose levels (P ⁇ 0.001), and TPD00203 had better virus-inhibiting effect than ETV at the same dose ( Figure 9).
  • *+++ exhibits >60% inhibitory activity against viral replication; ++ exhibits 30-60% inhibitory activity against viral replication; + exhibits 10-30% inhibitory activity against viral replication
  • the Huh7 cells cultured in the medium containing 10uM TPD00203 were used to transfect the flag-tagged P protein overexpression plasmid, and the medium containing 10 ⁇ M TPD00203 was changed 6 hours after transfection, and MG132 (final concentration 10 ⁇ M) was added 24 hours after transfection. ) inhibited the degradation of P protein, and cells were harvested after MG132 treatment for 12 hours.
  • MG132 is a reversible proteasome inhibitor. After removing MG132, the cells were cultured in a medium containing 10 ⁇ M TPD00203 for 12 hours, and the cells were harvested. The expression of P protein was detected by Western Blot experiment. DMSO was used as a control.
  • Huh7 cells were transfected with flag-Polymerase plasmid, and the proteasome inhibitor MG132 was added 24 hours after transfection to inhibit the degradation of P protein.
  • TPD00203 was observed to promote P protein degradation 36 hours after transfection, and MG132 inhibited drug degradation.
  • the P protein was degraded rapidly, and the level of P protein expression at 48 hours after transfection was lower than that at 36 hours after transfection.
  • the proteasome inhibition effect of MG132 is reversible, and the P protein accumulated in the cells will continue to be degraded after drug withdrawal (Figure 10- Figure 11).
  • Example 9 Construction of a cell line (Huh7-HBP) expressing LgBiT and HiBiT while highly expressing HBP gene
  • the LgBiT tag nucleotide sequence was obtained by gene synthesis, and both ends of the sequence had Nhe I and BamH I restriction sites.
  • the sequence was inserted into the lentiviral vector pCDH-CMV-EF1a-Neo by double digestion and ligation, and the recombinant plasmid was named pCDH-CMV-LgBiT-EF1a-Neo.
  • the recombinant plasmid adopts the CMV promoter and carries the neomycin resistance gene.
  • the target plasmid pCDH-CMV-LgBiT-EF1a-Neo together with the lentiviral helper plasmids pMD2.G and pSPAX2 were used for lentiviral packaging.
  • the lentivirus packaging process is as follows:
  • the three plasmids were evenly mixed with the transfection reagent PEI-Pro (polyplus, catalog number: 29031C1B), and allowed to stand at room temperature for 10 min.
  • the 293FT cells used to package the virus were taken out from the cell incubator at 37°C 5% CO 2 , the above mixture was added evenly to each plate, shaken gently, and placed in a 37° C 5% CO 2 incubator. After 4 hours, discard the old medium, add 5 mL of pre-warmed PBS to wash the cells, then add 20 mL of fresh pre-warmed DMEM medium containing 10% fetal bovine serum, and put it into a 37°C 5% CO 2 incubator for culture. .
  • the virus concentrate was divided into 100 ⁇ l/tube, and another 10 ⁇ l was reserved for virus titer determination. Store the aliquoted concentrate at -80°C.
  • Antibiotic resistance tests were performed first before constructing positive cell lines.
  • DMEM+10% FBS complete medium containing different concentrations of G418 (MCE, HY-17561) was added to the 24-well plate plated with Huh7 cell line. When the concentration of G418 reached 300ug/ml, all Huh7 cells died. This concentration was proved to be the maximum tolerated concentration of blank Huh7, and the subsequent positive cell lines were screened with this concentration.
  • the sequence of the target gene HBP with the HiBiT tag at the N end is obtained by gene synthesis, and the two ends have Xho I and BamH I restriction sites.
  • the sequence was inserted into the lentiviral vector pLVX-Puro vector, and the recombinant plasmid was named pLVX-HBP-Puro.
  • the recombinant plasmid adopts the CMV promoter and carries the puromycin resistance gene.
  • the target plasmid pLVX-HBP-Puro together with the lentiviral helper plasmids pMD2.G and pSPAX2 were used for lentiviral packaging.
  • the packaging process is the same as 9.2.
  • Antibiotic resistance tests were performed first before constructing positive cell lines.
  • DMEM+10% FBS complete medium containing different concentrations of puromycin (InvivoGen, ant-pr-1) was added to the 24-well plate plated with Huh7-LgBiT cell line. When the concentration of puromycin reached 2ug/ml, All Huh7-LgBiT cells died. This concentration was proved to be the maximum tolerated concentration of Huh7-LgBiT, and subsequent positive cell lines were screened with this concentration.
  • HBP sequence reference UniProt ID P03156.
  • LgBiT sequence SEQ ID No.1
  • Example 10 Compounds (I-X) degrade HBV P protein in the constructed Huh7-HBP cell line.
  • Digest and suspend the transfected huh-7-HBP cell line add 100ul of cell suspension to each well of a 96-well plate at a concentration of 2 ⁇ 10 ⁇ 5/ml, and incubate overnight. Add 10ul of drug to each well according to the pre-set dose, and each dose of each drug should be at least two replicate wells. Shake gently, then put it back into the incubator, and choose to incubate for 1-24h according to the specific situation. Will Live Cell Assay System kit LCS Dilution Buffer and The two reagents of Live Cell Substrate were mixed at a ratio of 20:1 and added to the cell plate to be tested at a ratio of 25ul per 100ul of the system. Shake for 30 seconds, and use BMG Labtech FLUOstar Omega microplate reader for full-wavelength luminescence detection. The higher the measured luminescence value, the higher the HBP content of the target protein.
  • the present invention provides a novel PROTAC compound that can effectively degrade HBV DNA polymerase.
  • the experimental results show that these compounds can prevent virus replication by degrading the DNA polymerase of the virus, and provide a solution for the effective treatment of viral infections.

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Abstract

一种涉及生物医药领域，具体而言涉及一类蛋白降解靶向嵌合体(PROTAC)化合物，其结构可用通式LGP-LK-LGE表示，其中LGP为结合脱氧核糖核酸(DNA)聚合酶的配体，LGE为结合E3泛素连接酶配体，LK为连结以上两种配体的桥链。该类化合物通过降解抑制病毒的脱氧核糖核酸(DNA)聚合酶而阻止病毒复制，杀灭病毒，进而起到治疗干预病毒感染性疾病如乙型肝炎及继发性疾病、获得性免疫缺陷综合症的作用。

Description

一种降解脱氧核糖核酸(DNA)聚合酶的化合物及其用途 技术领域
本发明涉及生物医药领域，具体而言涉及一类蛋白降解靶向嵌合体(PROTAC)化合物，其结构可用通式LGP-LK-LGE表示，其中LGP为结合脱氧核糖核酸(DNA)聚合酶的配体，LGE为结合E3泛素连接酶配体，LK为连结以上两种配体的桥链。该类化合物通过降解抑制病毒的脱氧核糖核酸(DNA)聚合酶而阻止病毒复制，杀灭病毒，进而起到治疗干预病毒感染性疾病如乙型肝炎及继发性疾病、获得性免疫缺陷综合症的作用。
背景技术
很多病理过程可以归因于脱氧核糖核酸(DNA)复制的失控，包括病毒或细菌感染、自身免疫性疾病、肿瘤等。在DNA复制过程中，DNA聚合酶催化核苷酸单体以DNA或RNA为模板的聚合过程，形成长链聚合物核酸。对DNA聚合酶的调控是影响干预DNA复制的重要手段。病毒感染属于多发性疾病，包括肝炎、获得性免疫缺陷综合症(AIDS)、严重急性呼吸道综合征(SARS)等，其共同特点是伴随高度的病毒DNA合成。而作为DNA合成的关键酶，病毒内源性聚合酶是多种病毒维护生命周期的重要组成，这些病毒包括肝炎病毒、人类免疫缺陷病毒和流感病毒。病毒内源性DNA聚合酶是开发抗病毒药物的关键靶点。
乙型肝炎病毒(HBV)是一种DNA病毒，属于嗜肝DNA病毒科(hepadnavividae)。HBV可以引发急性和慢性肝炎，HBV感染也是导致肝癌和肝硬化的主要原因。世界卫生组织统计，全世界约有20亿人曾感染乙肝病毒，其中3.5多亿人为慢性感染患者，每年约有786000人死于HBV感染所致的肝衰竭、肝硬化和原发性肝细胞癌(HCC)。对HBV的分子生物学特性的研究为寻找基于新的作用机制的药物提供了帮助。HBV基因组为部分双链环状DNA，负链长大约为3.2kb，而正链长度约为负链的50-100％。其基因组包含四个开放阅读框(Open Reading Frame,ORF)，分别对应为编码聚合酶(P蛋白)、核蛋白(C蛋白)、表面蛋白(S蛋白)以及X蛋白的基因。在这些HBV基因表达的蛋白中，聚合酶、表面蛋白和核蛋白是结构蛋白，而X蛋白具有调控功能。HBV聚合酶基因占全部病毒基因组的80％，并与其他基因的编码区重叠，根据基因型的不同可编码生成由832到845个氨基酸组成的P蛋白，即DNA聚合酶(Seeger C,Mason WS.Hepatitis B virus biology.Microbiol Mol Biol Rev.2000；64(1):51-68.)。该基因在病毒基因组复制中发挥着多重作用，其表达的DNA聚合酶(P蛋白)除了具有核酸复制的功能外，还作为必要的结构成分和衣壳蛋白、前基因组RNA及细胞因子等一起参与病毒包装形成未成熟病毒颗粒。HBV DNA聚合酶在肝细胞内作用合成DNA并附着到短链上从而形成HBV基因组完整的双螺旋，进一步通过RNA聚合酶的作用产生前基因组mRNA以及核蛋白、表面蛋白和调控蛋白(X蛋白)的mRNA，后者作为信使参与病毒蛋白翻译合成。
对HBV基因组开放读码框P区编码的氨基酸序列分析发现部分区域是高度保守的，与逆转录病毒的RNA依赖DNA多聚酶区及核糖核酸酶H(RNase H)区相似(Bartenschlager R,Schaller H.EMBO J.1992Sep；11(9):3413-20)。研究表明，构成HBV DNA聚合酶的4个结构域从5’末端开始，依次分别为末端蛋白区(TP domain)、间隔区(spacer)、逆转录酶区(RT domain)以及核糖核酸酶区(RNaseH domain)。这些不同的结构域与病毒复制过程的多个环节相关；其中末端蛋白具有多种功能,主要是在前基因组RNA反转录负链DNA时作为引物。末端蛋白也妨碍宿主细胞的干扰素诱导基因的激活,而抑制对干扰素的效应。DNA聚合酶在病毒基因组产生、与核蛋白和前基因组mRNA形成被称为复制体的结构方面具有重要功能。当复制体形成时，DNA负链由HBV聚合酶的反转录作用合成，而正链DNA链则通过DNA依赖的DNA聚合酶作用制成，其反过来又产生前基因组mRNA。DNA正链合成前,需要核糖核 酸酶H的活性以清除RNA-DNA杂交体中的RNA,留下单链DNA；降解形成的小片段RNA作为正链DNA合成的引物。对HBV DNA聚合酶逆转录区的氨基酸同源分析发现其包含5个主要的功能区域，他们分别为A区、B区、C区、D区和E区。其中A、C、D区为酶与三磷酸核苷结合区,而B、E区为RNA模板和引物定位区。DNA聚合酶的催化域位于C区的YMDD结构。这5个区域含有高度保守的氨基酸序列,是维持逆转录活性所必需的。
鉴于HBV DNA聚合酶在病毒逆转录乃至整个复制过程起到关键的作用，具备抑制聚合酶逆转录功能的核苷类化合物是目前用于治疗HBV感染的主要药物。其中包括拉米夫定(Lamivudine)、替比夫定(Telbivudine)、恩替卡韦(Entecavir)、阿德福韦酯(Adefovir Dipivoxil)、替诺福韦酯(Tenofovir disoproxil)和富马酸替诺福韦艾拉酚胺(Tenofovir alafenamide fumarate)等核(苷)酸类似物。这些核苷类似物是通过掺入聚合酶的DNA链,抑制HBV P蛋白的逆转录活性，不可逆地终止子代病毒HBV DNA新链的延伸、合成而阻止病毒繁殖。但是核苷类似物对cccDNA无明显影响，且并不减少前基因组RNA和mRNA,表明以DNA为模板的转录和病毒蛋白的转译不受药物影响。目前以聚合酶逆转录功能为靶点的治疗手段只能够抑制病毒的繁殖，还不能彻底清除HBV，达到治愈乙型肝炎的目的。另外核苷类药物也存在耐药性及停药后反弹的问题。因此寻找具有新作用机制的抗HBV药物是迫切需要解决的问题。由于HBV DNA聚合酶(P蛋白)在病毒生命周期多重阶段具有不同的功能，设计可以作用于HBV整体P蛋白进而阻断多重环节新类型药物是一个很有前景的发展方向。
在真核生物细胞内存在着两类主要的蛋白质降解途径：自噬(Autophagy)和泛素-蛋白酶体系统(ubiquitin proteasome system)。其中泛素-蛋白酶体途径是一种高效、特异的蛋白质降解过程，调控细胞内绝大多数蛋白质的降解。泛素化的蛋白质降解对于维持细胞中各种蛋白质的水平具有极其重要的作用，涉及了调节细胞周期、增殖、凋亡、转移、基因表达、信号传递等几乎一切生命活动。泛素蛋白是普遍存在于真核细胞内高度保守的蛋白，由76个氨基酸组成。泛素化的蛋白质可以被输送到26S蛋白酶体上或者进入溶酶体(lysosome)消化降解。蛋白质的泛素化是通过一系列的酶促反应来进行的。首先，泛素通过其C末端甘氨酸上的羧基和泛素活化酶(Ubiquitin activating enzyme)E1上的必需半胱氨酸巯基形成高能硫酯键而连接到E1上，成为活化状态的泛素；其次，活化的泛素从泛素活化酶E1转移到泛素结合酶(Ubiquitin conjugating enzyme)E2上；最后，在E3泛素连接酶(Ubiquitin ligase)的作用下，将连接在泛素结合酶E2上的泛素分子通过异构肽键的共价连接方式连接到底物蛋白上。泛素介导的蛋白降解特异性依靠泛素连接酶E3对底物蛋白特异的识别能力。
蛋白降解靶向嵌合体PROTAC(Proteolytic Targeting Chimera)技术利用了胞内的泛素-蛋白酶体系统降解特定的蛋白。技术特征为将可以结合靶向蛋白的小分子配体，和E3泛素连接酶的配体通过桥链片段连接起来，构成一个双功能化合物。通过调整优化连接方式，桥链的大小和其他理化性质，促使PROTAC分子两端的配体同时结合于靶蛋白与E3泛素连接酶，形成靶蛋白-PROTACs-E3连结酶三元复合物，进而使靶蛋白泛素化并被蛋白酶体系统降解。PROTAC技术具有可用于难成药蛋白降解、降解效力强以及在低浓度时即可保持催化降解作用等优势。同时，由于这一技术的蛋白降解模式为反复迭代，在靶蛋白突变等情况下相比传统的药物有更好的耐受性。PROTAC的技术难点在于靶蛋白配体，E3泛素连接酶配体的连接的构象和位点，桥链的长度和组成的修饰以及浓度等都会对三元复合物的形成及其稳定性产生影响，因此调控起来更具挑战性。
综上所述，鉴于这些病毒内源性DNA聚合酶在病毒复制过程中扮演的的重要角色，以及宿主细胞的泛素-蛋白酶体系统对特定蛋白降解的高效、特异性，本发明的目的是提供一类蛋白降解靶向嵌合体(PROTAC)，该类分子可以特定地降解病毒内源性DNA聚合酶(P蛋白)，从而在多重环节阻断病毒的复制，达到治疗病毒性感染疾病的目的。
发明内容
本发明涉及生物医药领域，具体而言涉及一类化合物或其药学上可接受的盐、溶剂化物、水合物、 多晶型物、互变异构体、几何异构体、同位素标记物、代谢产物或者前药。该类化合物通过降解抑制病毒的脱氧核糖核酸(DNA)聚合酶而阻止病毒复制，杀灭病毒，进而起到治疗干预病毒感染性疾病的作用。该类化合物属于蛋白降解靶向嵌合体(PROTAC),其结构可用通式LGP-LK-LGE表示，其中LGP为结合脱氧核糖核酸(DNA)聚合酶的配体，LGE为结合E3泛素连接酶配体，LK为连结以上两种配体的桥链(Linker)，即分子官能团的组合。本发明提供了一类新型的脱氧核糖核酸(DNA)聚合酶降解抑制剂，可以起到有效干扰病毒存活复制的功能，治疗病毒感染引起的疾病，包括乙型肝炎及继发性疾病、获得性免疫缺陷综合症。
本发明提供的具有通式LGP-LK-LGE的一类蛋白降解靶向嵌合体在感染HBV的细胞内可以有效降解DNA聚合酶(P蛋白)，并且能有效抑制HBV的复制。
本发明是通过以下方面实现的：
本发明的第一个方面：提供了一种双功能化合物，该类化合物为靶向蛋白降解嵌合体，其结构式如下：LGP-LK-LGE，其中LGP为结合脱氧核糖核酸(DNA)聚合酶的配体，LGE为结合E3泛素连接酶的配体，LK为连结以上两种配体LGP与LGE的桥链。
本发明的第二个方面：上述提供的化合物特征在于：结构式LGP-LK-LGE表示的化合物也包括其药学上可以接受的盐、溶剂化物、水合物、多晶型物、互变异构体、几何异构体、同位素标记物、代谢产物或者前药。
本发明的第三个方面：上述提供的化合物LGP-LK-LGE特征在于：结合脱氧核糖核酸(DNA)聚合酶的配体LGP可为如下任一结构，或者其羟基的磷酸化、双磷酸化、三磷酸化产物：
Figure PCTCN2022073159-appb-000001
本发明的第四个方面：上述提供的化合物LGP-LK-LGE特征在于桥链LK通过化学键链接在LGP上；其特征还在于：所述LK链接在LGP的碱基上或者在LGP的环戊糖单元上；进一步优选地，链接位置为如下任一结构所示的位置：
Figure PCTCN2022073159-appb-000002
Figure PCTCN2022073159-appb-000003
本发明的第五个方面：上述提供的化合物LGP-LK-LGE结合E3泛素连接酶的配体LGE为任选取代的如下所示的结构：
Figure PCTCN2022073159-appb-000004
其中，波折线表示与桥链LK通过化学键联接的部位；R 1任选是氢、氧或者任选C1-6烷基、C1-6 卤代烷基或者烷氧基；R 4任选是C1-6烷基、C1-6卤代烷基、或R 5CO-；R 5任选是C1-6烷基、C1-6卤代烷基；Y任选是C、O，S,NR 6；R 6任选C1-6烷基、C1-6卤代烷基或者烷氧基。
本发明的第六个方面：上述提供的化合物LGP-LK-LGE链接LGP与LGE两部分的桥链LK为任选的如下所示的结构：
Figure PCTCN2022073159-appb-000005
其中，波折线表示桥链LK与LGP或者LGE通过化学键联接的部位；m任选为自然整数0-5；n任选为自然整数0-25；p任选为自然整数0-4；q任选为自然整数0-20；r任选为自然整数1-3；s任选为自然整数1-5。X任选是C、O，S,NR 2；R 2任选C1-6烷基、C1-6卤代烷基或者烷氧基。
本发明的第七个方面：上述提供的化合物LGP-LK-LGE为任选的如下所示的结构：
Figure PCTCN2022073159-appb-000006
Figure PCTCN2022073159-appb-000007
Figure PCTCN2022073159-appb-000008
Figure PCTCN2022073159-appb-000009
其中，m为自然整数0-5；n为自然整数0-25；s任选为自然整数1-5；q任选为自然整数0-20；R 2任选是氢、-P(O)(OH) 2,-P(O)OH-P(O)(OH) 2,或者-P(O)(OH)-P(O)(OH)-P(O)(OH) 2。
本发明的第八个方面：上述提供的化合物LGP-LK-LGE为任选的如下所示的结构：
Figure PCTCN2022073159-appb-000010
Figure PCTCN2022073159-appb-000011
Figure PCTCN2022073159-appb-000012
其中，m为自然整数0-5；n为自然整数0-25；R 2任选是氢、-P(O)(OH) 2,-P(O)OH-P(O)(OH) 2,或者-P(O)(OH)-P(O)(OH)-P(O)(OH) 2。
Figure PCTCN2022073159-appb-000013
Figure PCTCN2022073159-appb-000014
其中，m为自然整数0-5；n为自然整数0-25；R 2任选是氢、-P(O)(OH) 2,-P(O)OH-P(O)(OH) 2,或者-P(O)(OH)-P(O)(OH)-P(O)(OH) 2；R 3任选是氢或者甲基。
本发明的第九个方面：上述提供的化合物LGP-LK-LGE为任选的如下所示的结构:
Figure PCTCN2022073159-appb-000015
Figure PCTCN2022073159-appb-000016
发明的第十个方面：上述提供的化合物LGP-LK-LGE为优先选择的如下所示的结构:
Figure PCTCN2022073159-appb-000017
Figure PCTCN2022073159-appb-000018
发明的第十一个方面：提供一种药物组合物，其特征在于，包括发明第一个方面到发明第十个方面任一项所述的化合物。
发明的第十二个方面：发明的第十一个方面所述药物组合物，其特征在于，进一步包含药学上可接受的载体、赋形剂、稀释剂、辅剂、媒介物或其组合。
发明的第十三个方面：发明的第十一个方面所述药物组合物，其特征在于，给药方式选自鼻服、吸入、局部、口服、肌内、皮下、经皮、腹腔、硬膜外、鞘内和静脉内途径中的至少一种。
发明的第十四个方面：发明第一个方面到发明第十个方面任一项所述的化合物明的制备方法，其特征在于:化合物(I)可由任选自以下两种合成路线制备：
Figure PCTCN2022073159-appb-000019
Figure PCTCN2022073159-appb-000020
其特征还在于:化合物(VI)可由以下合成路线制备：
Figure PCTCN2022073159-appb-000021
发明的第十五个方面：发明第一个方面到发明第十个方面任一项所述的化合物或发明的第十一个方面所述药物组合物，其特征在于，能够降解抑制脱氧核糖核酸(DNA)聚合酶。
发明的第十六个方面：发明的第十一个方面所述药物组合物，其特征在于，能够优选的降解抑制病毒内源性脱氧核糖核酸(DNA)聚合酶。
发明的第十七个方面：发明的第十一个方面所述药物组合物，其特征在于，能够更优选的降解抑制嗜肝DNA病毒科(Hepadnaviridae)所属病毒内源性脱氧核糖核酸(DNA)聚合酶。
发明的第十八个方面：发明的第十一个方面所述药物组合物，其特征在于，能够更优选的降解乙型肝炎病毒病毒内源性脱氧核糖核酸(DNA)聚合酶。
发明的第十九个方面：发明第一个方面到发明第十个方面任一项所述的化合物或发明的第十一个方面所述的药物组合物在降解抑制脱氧核糖核酸(DNA)聚合酶过程中的用途。
发明的第二十个方面：发明第一个方面到发明第十个方面任一项所述的化合物或发明的第十一个方 面所述的药物组合物在制备降解抑制脱氧核糖核酸(DNA)聚合酶药物中的用途。
发明的第二十一个方面：发明第一个方面到发明第十个方面任一项所述的化合物或发明的第十一个方面所述的药物组合物用于治疗、预防或诊断与脱氧核糖核酸聚合酶相关的各种疾病中的应用，所述疾病包括但不限于病毒感染性疾病及由病毒感染引起的继发性疾病，所述病毒感染性疾病由乙型肝炎病毒、人类免疫缺陷病毒、HCV、HDV、HEV、埃博拉病毒、SARS病毒、COVID19感染所致，所述继发性疾病包括但不限于：肝硬化、肝纤维化、肝癌。
发明的第二十二个方面：一种同时表达LgBiT和HiBiT并且高表达HBP基因的细胞系Huh7-HBP，其特征在于，具有HBP基因，并且优选地由以下方法制备：
(1)将LgBiT标签核苷酸序列插入慢病毒载体pCDH-CMV-EF1a-Neo，得到重组质粒pCDH-CMV-LgBiT-EF1a-Neo，将所述重组质粒pCDH-CMV-LgBiT-EF1a-Neo连同慢病毒辅助质粒pMD2.G和pSPAX2一起进行慢病毒包装，将包装完成的慢病毒转导Huh7细胞系，得到新的细胞系Huh7-LgBiT；
(2)N端带有HiBiT标签的目的基因HBP的序列插入慢病毒载体pLVX-Puro载体中，得到重组质粒pLVX-HBP-Puro，将所述重组质粒pLVX-HBP-Puro连同慢病毒辅助质粒pMD2.G和pSPAX2一起进行慢病毒包装，将包装完成的慢病毒转导Huh7-LgBiT细胞系，得到同时表达LgBiT和HiBiT并且高表达HBP基因的细胞系Huh7-HBP。
发明的第二十三个方面：如发明的第二十二个方面所述的细胞系Huh7-HBP在测定细胞内病毒DNA聚合酶的含量中的用途。
附图说明
图1：本发明化合物(I)的 1H NMR光谱图；
图2：本发明化合物(I)的质谱图；
图3：本发明化合物(I)的高效液相谱图；
图4：化合物(VI)的1H NMR图；
图5：化合物(VI)的质谱图；
图6：化合物(VI)的高效液相谱图；
图7：化合物(I)(TPD00203)在HepG2.2.15细胞阻止病毒复制的作用(7天)；
图8：化合物(I)(TPD00203)在HepAD38细胞中阻止病毒复制的作用(7天)；
图9：化合物(I)(TPD00203)在HepAD38细胞中与相同浓度阳性对照药物(ETV)阻止病毒复制作用比较(7天)；
图10：化合物(I)(TPD00203)在过度表达Flag-多聚酶的Huh7细胞中对P蛋白的降解36-48小时实验；
图11：化合物(I)(TPD00203)在过度表达Flag-多聚酶的Huh7细胞中对P蛋白的降解30-36小时实验；
图12：质粒序列与图谱PLVX-HBP-HiBiT-Puro；
图13：质粒序列与图谱pCDH-CMV-LgBiT-EF1a-Neo；
图14：化合物(I)在Huh7-HBP细胞系中对HBP蛋白降解作用。
具体实施方式
下面结合本发明实施例中的附图通过具体实施例进一步说明本发明。但是这些实施例仅仅是用于更详细的具体说明用，而不应理解为用于以任何形式限制本发明。本发明可以由权利要求限定和覆盖的多种不同方式实施。
本发明对试验中所使用到的材料以及实验方法进行一般性和具体性的描述。虽然为实现本发明的目 的所使用的许多材料和操作方法是本领域公知的，但是本发明仍然在此作尽可能详细的描述。在下文中，如未特别说明，所使用的材料和操作方法是本领域公知的。
除非另外定义，本发明中使用的所有术语(包括技术术语和科学术语)均具有如本发明所属领域的普通技术人员通常理解的相同含义。
实施例1：靶向降解DNA聚合酶的化合物(I)的合成与结构确认。
目标化合物(I，TPD00203)经由如下合成路线制备：
Figure PCTCN2022073159-appb-000022
2-氨基-9-[(1S,3S,4S)-4-叔丁基二甲基硅氧基-3-叔丁基二甲基硅氧基甲基-2-亚甲基环戊基]-1，9-氢-嘌呤-6-醇(化合物2)：室温下将2-氨基-9-[(1S,3S,4S)-4-羟基-3-羟甲基-2-亚甲基环戊基]-1，9-氢-嘌呤-6-醇(700mg，2.52mmol)和DMAP(16mg，0.13mmol)溶于吡啶(20mL)中,室温下慢慢加入TBDMSCl(950mg，6.30mmol)，反应液于50℃条件下反应24小时。冷却到室温后，倒入水中，用乙酸乙酯萃取两次，水洗两次，饱和食盐水洗涤两次，无水硫酸钠干燥过滤，过滤，有机相旋干，上制备板分离得到500mg化合物2(收率：39％)。产品性状为白色固体。
乙基10-((2-氨基-9-[(1S,3S,4S)-4-叔丁基二甲基硅氧基-3-叔丁基二甲基硅氧基甲基-2-亚甲基环戊基]-9-氢-嘌呤-6-氧基癸酸酯(化合物7)：室温下将化合物2(500mg，0.99mmol溶于THF(10mL)中,依次加入乙基10-羟基癸酸酯(化合物6)(257mg，1.19mmol)、PPh 3(391mg，1.49mmol)、DIAD(301mg，1.49mmol)。反应液置换氮气后于室温反应24小时。倒入水中，用乙酸乙酯萃取两次，水洗两次，饱和食盐水洗涤两次，无水硫酸钠干燥过滤，有机相旋干，上制备板分离得到430mg化合物7(收率：62％)。
10-(2-氨基-9-[(1S,3S,4S)-4-叔丁基二甲基硅氧基-3-叔丁基二甲基硅氧基甲基)-2-亚甲基环戊基]-9-氢-嘌呤-6-氧基癸酸(化合物8)：室温下将化合物7(430mg，0.61mmol溶于EtOH(10mL)中，加入LiOH﹒H2O(77mg，1.83mmol)。反应液于室温反应12小时。旋干加水溶解，用柠檬酸酸化到pH 4，用DCM萃取两次，水洗两次，无水硫酸钠干燥过滤，有机相旋干得370mg化合物8(收率：90％)。
(2S,4R)-1-((S)-2-(10-((2-氨基-9-[(1S,3S,4S)-4-叔丁基二甲基硅氧基-3-叔丁基二甲基硅氧基甲基-2-亚甲基环戊基]-9-氢-嘌呤-6-烷基氧)癸酰胺)-3,3-二甲基丁酰基)-N-(4-(4-甲基噻唑-5-烷)苄基)吡咯烷-2-甲酰胺(化合物5)：室温下将化合物8(370mg，0.54mmol和(2S,4R)-1-((S)-2-氨基-3,3-二甲基丁酰)-4-羟基-N-(4-(4-甲基噻唑-5-烷)苄基)吡咯烷-2-甲酰胺(化合物3，252mg，0.54mmol)溶于DCM(10mL)中,依次加入HOBT(109mg，0.81mmol)，EDCI(155mg，0.81mmol)，DIEA(279mg，2.16mmol)。反应液于室温反应12小时。加水淬灭反应，用DCM萃取两次，水洗两次，无水硫酸钠干燥过滤，有机相旋干后粗品用制备HPLC分离得到230mg化合物5(收率：39％)。
(2S,4R)-1-((S)-2-(10-((2-氨基-9-[(1S,3S,4S)-4-羟基-3-羟甲基-2-亚甲基环戊基]-9-氢-嘌呤-6-烷基氧)癸酰胺)-3,3-二甲基丁酰基)-N-(4-(4-甲基噻唑-5-烷)苄基)吡咯烷-2-甲酰胺(化合物I)(TPD00203):室温下将化合物8(230mg，0.21mmol溶于THF(10mL)中，加入TBAF(220mg，0.84mmol)，反应液于室温反应12小时，有机相旋干，粗品用制备HPLC分离得到103mg白色固体化合物(I)(收率：57％)。
目的化合物(I，TPD00203)结构和纯度经过核磁共振谱，质谱以及高效液相色谱确证无误，高效液相色谱确证预期化合物(I，TPD00203)纯度高于95％(参见图1至图3)。
实施例2：化合物II-V的合成与结构确认
2.1目的化合物II采用与化合物I相同的合成方法制备，但是化合物I合成中采用的中间体化合物6被如下中间体代替：
Figure PCTCN2022073159-appb-000023
2.2目的化合物III采用与化合物I相同的合成方法制备，但是化合物I合成中采用的中间体化合物6被如下中间体代替：
Figure PCTCN2022073159-appb-000024
2.3目的化合物IV采用与化合物I相同的合成方法制备，但是化合物I合成中采用的中间体化合物6被如下中间体代替：
Figure PCTCN2022073159-appb-000025
2.4目的化合物V采用与化合物I相同的合成方法制备，但是化合物I合成中采用的中间体化合物6被如下中间体代替
Figure PCTCN2022073159-appb-000026
以上化合物结构经过核磁共振谱，质谱，以及高分辨质谱确证无误；纯度经过高效液相色谱测定。 数据结果见实施例5表格。
实施例3：靶向降解DNA聚合酶的化合物(VI)的合成与结构确认
目标化合物(VI)经由如下合成路线制备
Figure PCTCN2022073159-appb-000027
((1R,3S)-3-(2-氨基-6-氧-1,6-二氢-9H-嘌呤-9-基)-5-羟基-2-亚甲基环戊基)甲基4-甲基苯磺酸酯(化合物9)：将2-氨基-9-[(1S,3S,4S)-4-羟基-3-羟甲基-2-亚甲基环戊基]-1，9-氢-嘌呤-6-醇(4g，14.4mmol)和TosCl(3.57g，18.72mmol)在吡啶(30mL)中25℃下搅拌过夜。反应完成后将反应液减压浓缩，得到黄色油状粗品化合物9(11.8g，收率57％)。该粗品直接用于下步反应。
2-(((1R,3S)-3-(2-氨基-6-羟基-9H-嘌呤-9-基)-5-羟基-2-2-亚甲基环戊基)甲基异吲哚啉-1,3-二酮(化合物10)：将化合物9(11.8g,27.3mmol)、邻苯二甲酰亚胺(6.03g，40.9mmol)和碳酸钾(7.55g，54.6mmol)溶于DMF(110mL)中，50℃反应16小时。反应完成后，过滤，滤液高压制备液相纯化得到灰色固体化合物10(0.32g,纯度95％)。
2-氨基-9-((1S,3R)-3-(氨甲基)-4-羟基-2-亚甲基环戊基)-1,9-二氢-6H-嘌呤-6-酮(化合物11)：化合物10(280mg,0.69mmol)溶于MeOH(5mL)中，加入水合肼(172.5mg,1.38mmol)，25℃反应2小时。反应完成将反应液倒入MTBE中(30mL)，产品析出，过滤得棕色固体化合物11(150mg,纯度90％，收率71％)。
叔丁基10-(((S)-1-((2S,4R)-4-羟基-2-((4-(4-甲基噻唑-5-基)卞基)氨基甲酰)吡咯烷-1-基)-3,3-二甲基-1-氧丁烷-2-y基)胺基)-10-氧癸酸酯(化合物12)：将(2S,4R)-1-((S)-2-氨基-3,3-二甲基丁酰)-4-羟基-N-(4-(4-甲基噻唑-5-烷)苄基)吡咯烷-2-甲酰胺(化合物3，200mg,0.46mmol)、10-(叔丁氧基)-10-氧代癸酸(化合物14,144mg,0.56mmol)、HOBT(94.1mg,0.70mmol)，EDCI(133.6mg,0.70mmol)和三乙胺(141mg,1.39mmol)溶于DMF(5mL)中，25℃反应16小时。反应完成后将反应液加入冰水(30mL)中，并用乙酸乙酯(20mL x 2)萃取，有机层用Na 2SO 4干燥并浓缩，TLC板分得到黄色油状化合物12(230mg，纯度95％，收率70％)。
10-(((S)-1-((2S,4R)-4-羟基-2-((4-(4-甲基噻唑-5-基)卞基)氨基甲酰)吡咯烷-1-基)-3,3-二甲基-1-氧丁烷-2-基)胺基)-10-氧癸酸(化合物13)：将化合物12(200mg,0.30mmol)溶于(5mL)DCM中，加入TFA(339.9mg,2.98mmol)，25℃反应1小时。反应完成真空旋干溶剂得到黄色油状化合物13(150mg，纯度95％，收率68％)。
N1-(((1R,3S)-3-(2-氨基-6-氧-1,6-二氢-9H-嘌呤-9-基)-5-羟基-2-亚甲基环戊基)甲基)-N10-((S)-1-((2S,4R)-4-羟基-2-((4-(4-甲基噻唑-5-基)卞基)氨基甲酰)吡咯烷-1-基)-3,3-二甲基-1-氧丁烷-2-基)癸酸二酰胺(化合物VI)：化合物13(120mg，0.43mmol)和化合物11(320.4mg，0.52mmol)溶于DMF(3mL)中，室温下加入HOBT(88.02mg,0.65mmol)、EDCI(124.9mg,0.65mmol)和TEA(131.8mg,1.30mmol)，反应液25℃反应16小时。反应液高压液相制备纯化得白色固体(VI，30mg，纯度96％，收率14％)。目的化合物(VI)结构和纯度经过核磁共振谱，质谱以及高效液相色谱确证无误，高效液相色谱确证预期化合物(VI)纯度高于95％(参见图4至图6)。
实施例4：化合物VII-X的合成与结构确认
4.1目的化合物VII采用与化合物VI相同的合成方法制备，但是化合物VI合成中采用的中间体化合物14被如下中间体代替：
Figure PCTCN2022073159-appb-000028
4.2目的化合物VIII采用与化合物VI相同的合成方法制备，但是化合物VI合成中采用的中间体化合物14被如下中间体代替：
Figure PCTCN2022073159-appb-000029
4.3目的化合物IX采用与化合物VI相同的合成方法制备，但是化合物VI合成中采用的中间体化合物14被如下中间体代替：
Figure PCTCN2022073159-appb-000030
4.4目的化合物X采用与化合物VI相同的合成方法制备，但是化合物VI合成中采用的中间体化合物6被如下中间体代替
Figure PCTCN2022073159-appb-000031
以上化合物结构经过核磁共振谱，质谱，以及高分辨质谱确证无误；纯度经过高效液相色谱测定。数据结果见实施例5表格。
实施例5：化合物I-X的质谱，高分辨质谱及高效液相分析结果
Figure PCTCN2022073159-appb-000032
实施例6化合物(I，TPD00203)对不同细胞系中HBV病毒复制抑制实验
体外细胞模型1：乙型肝炎病毒(HBV)转染的HepG2细胞,即HepG2 2.2.15细胞。
体外细胞模型2：稳定产毒的HepAD38细胞。
阳性药物对照:恩替卡韦(ETV)。
试验过程：将HepG2.2.15和稳定产毒的HepAD38细胞分为六个实验组。每孔细胞数7x10 4个，每孔培养基用量500μl。第一组为空白对照，第二组为阳性对照，加入3.75nM的ETV；第三组到第六组分别加入3.75nM、100nM、5μM和100μM化合物(I，TPD00203)。加药后第3天收集上清液并检测上清液中HBV DNA水平。第7天再次收集上清液并细胞沉淀，检测上清中HBV DNA水平。
实验结果：对HBV复制的抑制效果见图7～图8。在HepG2.2.15细胞系中，给药7天后，恩替卡韦组显示了明显的病毒复制抑制作用(P≤0.001)；TPD00203给药组与空白组相比在3.75nM(P≤0.001)、5μM(P≤0.001)和100μM(P≤0.001)三个剂量都显示了明显的病毒复制抑制作用(图7)。在HepAD38细胞系中，给药7天后各个剂量组以及阳性对照组都显示了明显的对病毒复制抑制效果(图8)。
在初步对TPD00203抑制病毒效果评估后，又在HepAD38细胞系中对相同剂量的TPD00203与ETV的抑制作用进行了比较测定。ETV和TPD00203均为10nM、100nM、1μM、10μM 4个剂量组。7天的实验结果显示ETV和TPD00203在测试各个剂量水平都可以明显抑制病毒复制(P≤0.001)，并且在相同剂量情况下TPD00203抑制病毒效果优于ETV(图9)。
实施例7化合物(I-X)在HepAD38细胞系中对HBV病毒复制抑制活性结果
化合物(I-X)在HepAD38细胞系对病毒的抑制活性以实施例6相同的方法测定，结果见下表。
Figure PCTCN2022073159-appb-000033
*+++对病毒复制呈现>60％抑制活性；++对病毒复制呈现30-60％抑制活性；+对病毒复制呈现10-30％抑制活性
实施例8化合物(I，TPD00203)对Huh7细胞系中HBV P蛋白降解作用
体外细胞模型：Huh7.
蛋白酶体抑制剂：MG132
使用含10uM TPD00203药物的培养基培养的Huh7细胞转染含flag标签的P蛋白过表达质粒，转染后6小时换为含10μM TPD00203药物的培养基，转染后24小时加入MG132(终浓度10μM)抑制P蛋白降解，MG132处理12小时后收细胞。MG132是可逆的蛋白酶体抑制剂，撤去MG132后再用含10μM TPD00203药物的培养基培养12小时，收细胞。进行Western Blot实验检测P蛋白表达情况。以DMSO作为对照。
实验结果：在Huh7细胞中转染flag-Polymerase质粒，并在转染后24小时加入蛋白酶体抑制剂MG132抑制P蛋白的降解。在转染后36小时可以观察到TPD00203促进P蛋白降解，并且MG132会抑制药物的降解作用。P蛋白降解迅速，在转染后48小时的P蛋白表达水平低于转染后36小时。MG132的蛋白酶体抑制作用可逆，在撤药后，细胞内蓄积的P蛋白会继续降解(图10-图11)。
实施例9 表达LgBiT和HiBiT，同时高表达HBP基因的细胞系(Huh7-HBP)的构建
细胞系构建流程：
9.1目的质粒pCDH-CMV-LgBiT-EF1a-Neo获取
首先，通过基因合成的方式获得LgBiT标签核苷酸序列，并且序列两端带有Nhe I和BamH I酶切位点。序列合成完成后，通过双酶切、连接方式将该序列插入慢病毒载体pCDH-CMV-EF1a-Neo，重组质粒命名为pCDH-CMV-LgBiT-EF1a-Neo。该重组质粒采用CMV启动子，并带有新霉素抗性基因。
9.2慢病毒包装
将目的质粒pCDH-CMV-LgBiT-EF1a-Neo连同慢病毒辅助质粒pMD2.G和pSPAX2一起，进行慢病毒包装。慢病毒包装流程如下：
将已长到80％-90％的293FT细胞培养瓶(T175)从37℃5％CO 2的细胞培养箱中取出，加入2mL TrypLETM EXPRESS消化后收集洗涤细胞，并将细胞重新铺145mm平皿，加20mL DMEM培养基(Thermo Fisher)，轻轻摇匀，使细胞大约覆盖平皿的80％，放入37℃，5％CO 2培养箱中培养。
24小时后，将三个质粒与转染试剂PEI-Pro(polyplus，货号：29031C1B)混合均匀，室温静置10min。将用于包装病毒的293FT细胞从37℃5％CO 2的细胞培养箱中取出，将上述混合液平均加到每平皿中，轻轻摇匀，放入37℃5％CO 2培养箱中。4h后，弃旧培养基，加入5mL已预热的PBS清洗细胞，再加入20mL新鲜的已预热的含10％胎牛血清的DMEM培养基，放入37℃5％CO 2培养箱中培养。
继续培养48h-72h后收取培养上清作为病毒原液。将原液高速离心2h。将上清液弃净，加入无血清培养基重悬病毒颗粒。加入的培养基体积：病毒原液体积＝1:500。此即为病毒浓缩液。将病毒浓缩液按100μl/管分装，另外留取10μl进行病毒滴度测定。将分装好的浓缩液置于-80℃保存。
9.3 Huh7-LgBiT细胞系构建
构建阳性细胞系前，首先进行抗生素耐受性的测试。将铺有Huh7细胞系的24孔板中加入含有不同浓度的G418(MCE，HY-17561)DMEM+10％FBS完全培养基，当G418浓度到达300ug/ml时，Huh7细胞全部死亡。证明该浓度为空白Huh7最大耐受浓度，后续阳性细胞系用该浓度进行筛选。
将包装完成的慢病毒进行Huh7细胞系的转导：
Day1:按照2E5/孔将Huh7细胞系铺6孔板；
Day2:按20ul/孔加入LgBiT慢病毒，轻轻混匀；
Day3:按照预先测试出的抗生素浓度加入到转导后的细胞系中，同时做空白Huh7的对照。
当对照组细胞全部死亡，实验组细胞仍有存活时停止筛选。实验组细胞系继续进行培养，同时加入300ug/ml的G418。
9.4 PLVX-HBP-Puro质粒的构建
首先，通过基因合成的方式获得N端带有HiBiT标签的目的基因HBP的序列，并且两端带有Xho I和BamH I酶切位点，序列合成完成后，通过双酶切、连接方式将该序列插入慢病毒载体pLVX-Puro载体中，重组质粒命名为pLVX-HBP-Puro。该重组质粒采用CMV启动子，并带有嘌呤霉素抗性基因。
9.5慢病毒包装
将目的质粒pLVX-HBP-Puro连同慢病毒辅助质粒pMD2.G和pSPAX2一起，进行慢病毒包装。包装流程同9.2。
9.6 Huh7-HBP
构建阳性细胞系前，首先进行抗生素耐受性的测试。将铺有Huh7-LgBiT细胞系的24孔板中加入含有不同浓度的嘌呤霉素(InvivoGen，ant-pr-1)DMEM+10％FBS完全培养基，当嘌呤霉素浓度到达2ug/ml时，Huh7-LgBiT细胞全部死亡。证明该浓度为Huh7-LgBiT最大耐受浓度，后续阳性细胞系用该浓度进行筛选。
将包装完成的慢病毒进行Huh7-LgBiT细胞系的转导：
Day1:按照2E5/孔将Huh7-LgBiT细胞系铺6孔板；
Day2:按20ul/孔加入HBP-HiBiT慢病毒，轻轻混匀；
Day3:按照预先测试出的抗生素浓度加入到转导后的细胞系中，同时做Huh7-LgBiT的对照。
当对照组细胞全部死亡，实验组细胞仍有存活时停止筛选。实验组细胞系继续进行培养，同时加入2ug/ml的嘌呤霉素。最终获得同时表达LgBiT和HiBiT，并且高表达HBP基因的细胞系Huh7-HBP。
HBP序列参考：UniProt ID P03156。
LgBiT序列：SEQ ID No.1
Figure PCTCN2022073159-appb-000034
HiBiT序列来自于Promega公司，通过https://promega.formstack.com/forms/hibit_synthesis_licensing_agreement
查看并同意相关使用条款可以获得HiBiT序列。
实施例10化合物(I-X)在构建的Huh7-HBP细胞系中对HBV P蛋白降解作用.
一：Huh7-HBP细胞系中测定HBVP蛋白浓度试验步骤：
将转染好的huh-7-HBP细胞系消化悬浮，以2x10^5/ml的浓度，在96孔板中每孔加入100ul细胞悬液，孵育过夜。按照提前设定的剂量在每孔加入10ul药物，每个药物的每个剂量应至少两个复孔。轻轻震荡，然后重新放入培养箱内，根据具体情况选择孵育1-24h。将
Figure PCTCN2022073159-appb-000035
Live Cell Assay System试剂盒中
Figure PCTCN2022073159-appb-000036
LCS Dilution Buffer与
Figure PCTCN2022073159-appb-000037
Live Cell Substrate两种试剂按照20:1混匀，按照每100ul体系加入25ul的比例加入到待检测细胞板中。震荡30秒，使用BMG Labtech FLUOstar Omega酶标仪进行全波长发光度检测。所测发光值越高，表明目标蛋白HBP含量越高。
二：Huh7-HBP细胞系中HBVP蛋白(即DNA聚合酶)降解实验结果：
根据方法一所述测定了目的化合物I-X在5个不同浓度对HBV P蛋白的降解作用。化合物I-X均呈现不同程度的P蛋白降解作用。参见附图14及下表。
Figure PCTCN2022073159-appb-000038
*+++蛋白降解>70％；++蛋白降解30-70％；+蛋白降解<30％
综上所述，本发明提供了一种可有效降解HBV DNA聚合酶的新型PROTAC化合物。实验结果表明，该类化合物可通过降解病毒的DNA聚合酶达到阻止病毒复制的目的，为有效治疗病毒性感染疾病提供了一个的解决方案。

Claims (12)

  1. 一种双功能化合物及其药学上可接受的盐、溶剂化物、水合物、多晶型物、互变异构体、几何异构体、同位素标记物、代谢产物或者前药，其特征在于，所述双功能化合物具有LGP-LK-LGE的结构，其中LGP为结合脱氧核糖核酸(DNA)聚合酶的配体，LGE为结合E3泛素连接酶的配体，LK为连接LGP与LGE的桥链。
  2. 根据权利要求1所述的双功能化合物，其特征在于：所述LGP选自以下结构组成的组，或者选自在以下任一结构的羟基处磷酸化、双磷酸化或三磷酸化后的结构组成的组：
    Figure PCTCN2022073159-appb-100001
  3. 根据权利要求1所述的双功能化合物，其特征在于:所述LGE选自如下所示的结构组成的组：
    Figure PCTCN2022073159-appb-100002
    Figure PCTCN2022073159-appb-100003
    其中，波折线表示与LK通过化学键链接的部位；R 1任选是氢、氧或者任选C1-6烷基、C1-6卤代烷基或者烷氧基；R 4任选是C1-6烷基、C1-6卤代烷基或R 5CO-；R 5任选是C1-6烷基、C1-6卤代烷基；Y任选是C、O、S、NR 6；R 6任选C1-6烷基、C1-6卤代烷基或者烷氧基。
  4. 根据权利要求1所述的双功能化合物，其特征在于:所述LK任选地具有如下所示的结构：
    Figure PCTCN2022073159-appb-100004
    其中，波折线表示桥链LK与LGP或者LGE通过化学键联接的部位；m任选为自然整数0-5；n任选为自然整数0-25；p任选为自然整数0-4；q任选为自然整数0-20；r任选为自然整数1-3；s任选为自然整数1-5，X任选是C、O、S、NR 2；R 2任选C1-6烷基、C1-6卤代烷基或者烷氧基；优选地，所述LK通过化学键链接在LGP上；更优选地，所述LK链接在LGP的碱基上，进一步优选地，链接位置为如下任一结构所示的位置：
    Figure PCTCN2022073159-appb-100005
    Figure PCTCN2022073159-appb-100006
    或者优选地，所述LK链接在LGP的环戊糖单元上，进一步优选地，链接位置为如下任一结构所示的位置：
    Figure PCTCN2022073159-appb-100007
    Figure PCTCN2022073159-appb-100008
  5. 根据权利要求1-4任一项所述的双功能化合物，其特征在于，所述LGP-LK-LGE任选地具有如下所示的结构：
    Figure PCTCN2022073159-appb-100009
    Figure PCTCN2022073159-appb-100010
    其中，m为自然整数0-5，n为自然整数0-25，s任选为自然整数1-5，q任选为自然整数0-20，R 2任选是氢、-P(O)(OH) 2、-P(O)OH-P(O)(OH) 2或者-P(O)(OH)-P(O)(OH)-P(O)(OH) 2；或
    Figure PCTCN2022073159-appb-100011
    Figure PCTCN2022073159-appb-100012
    其中，m为自然整数0-5，n为自然整数0-25，R 2任选是氢、-P(O)(OH) 2、-P(O)OH-P(O)(OH) 2或者-P(O)(OH)-P(O)(OH)-P(O)(OH) 2；或
    Figure PCTCN2022073159-appb-100013
    其中，m为自然整数0-5，n为自然整数0-25，R 2任选是氢、-P(O)(OH) 2、-P(O)OH-P(O)(OH) 2或者-P(O)(OH)-P(O)(OH)-P(O)(OH) 2，R 3任选是氢或者甲基；或根据权利要求1-4任一项所述的双功能化合物LGP-LK-LG优先选自具有如下所示的结构：
    Figure PCTCN2022073159-appb-100014
    Figure PCTCN2022073159-appb-100015
    Figure PCTCN2022073159-appb-100016
  6. 包括权利要求1-5任一项所述的双功能化合物的药物组合物。
  7. 根据权利要求6所述的药物组合物，其特征在于，还进一步包含药学上可接受的载体、赋形剂、稀释剂、辅剂、媒介物或其组合。
  8. 权利要求1-5任一项所述的化合物的制备方法，其特征在于，所述化合物(I)可由任选自以下两种合成路线制备：
    路线(1)：
    Figure PCTCN2022073159-appb-100017
    路线(2)：
    Figure PCTCN2022073159-appb-100018
    或者，所述化合物(VI)可由以下合成路线制备：
    Figure PCTCN2022073159-appb-100019
    Figure PCTCN2022073159-appb-100020
  9. 权利要求1-5任一项所述的双功能化合物或权利要求6-7任一项所述的药物组合物用于制备降解抑制脱氧核糖核酸(DNA)聚合酶的药物中的用途，所述脱氧核糖核酸(DNA)聚合酶优选为病毒内源性脱氧核糖核酸(DNA)聚合酶，更优选为乙型肝炎病毒病毒内源性脱氧核糖核酸(DNA)聚合酶，进一步优选为嗜肝DNA病毒科(Hepadnaviridae)病毒内源性脱氧核糖核酸(DNA)聚合酶。
  10. 权利要求1-5任一项所述的双功能化合物或权利要求6-7任一项所述的药物组合物用于治疗、预防或诊断与脱氧核糖核酸聚合酶相关的各种疾病中的应用，所述疾病包括但不限于病毒感染性疾病及其继发性疾病，优选地，所述病毒感染性疾病为乙型肝炎病毒、人类免疫缺陷病毒、HCV、HDV、HEV、埃博拉病毒、SARS病毒、COVID19感染所致；所述病毒感染引起的继发性疾病优选为肝硬化、肝纤维化、肝腹水或肝癌。
  11. 一种同时表达LgBiT和HiBiT并且高表达HBP基因的细胞系Huh7-HBP，其特征在于，具有HBP基因，并且优选地由以下方法制备：
    (1)将LgBiT标签核苷酸序列插入慢病毒载体pCDH-CMV-EF1a-Neo，得到重组质粒pCDH-CMV-LgBiT-EF1a-Neo，将所述重组质粒pCDH-CMV-LgBiT-EF1a-Neo连同慢病毒辅助质粒pMD2.G和pSPAX2一起进行慢病毒包装，将包装完成的慢病毒转导Huh7细胞系，得到新的细胞系Huh7-LgBiT；
    (2)N端带有HiBiT标签的目的基因HBP的序列插入慢病毒载体pLVX-Puro载体中，得到重组质粒pLVX-HBP-Puro，将所述重组质粒pLVX-HBP-Puro连同慢病毒辅助质粒pMD2.G和pSPAX2一起进行慢病毒包装，将包装完成的慢病毒转导Huh7-LgBiT细胞系，得到同时表达LgBiT和HiBiT并且高表达HBP基因的细胞系Huh7-HBP。
  12. 如权利要求11所述的细胞系Huh7-HBP在测定细胞内病毒DNA聚合酶的含量中的用途。
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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN116297415A (zh) * 2023-05-11 2023-06-23 细胞生态海河实验室 一种protac药物的筛选方法及载体

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2022156764A1 (zh) * 2021-01-22 2022-07-28 泰比棣医药科技(石家庄)有限公司 一种降解脱氧核糖核酸(dna)聚合酶的化合物及其用途
CN117229260B (zh) * 2023-11-13 2024-02-27 中国药科大学 DNA聚合酶θ与聚ADP核糖聚合酶1双靶点抑制剂及其制备方法和医药用途

Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103881979A (zh) * 2014-03-20 2014-06-25 北京大学 抗丙肝病毒药物高通量筛选模型及其应用
WO2016146985A1 (en) * 2015-03-13 2016-09-22 University Of Dundee Derivatives of 1-[(cyclopentyl or 2-pyrrolidinyl)carbonylaminomethyl]-4-(1,3-thiazol-5-yl) benzene which are useful for the treatment of proliferative, autoimmune or inflammatory diseases
WO2017011590A1 (en) * 2015-07-13 2017-01-19 Arvinas, Inc. Alanine-based modulators of proteolysis and associated methods of use
CN108601764A (zh) * 2015-03-18 2018-09-28 阿尔维纳斯股份有限公司 用于靶蛋白的增强降解的化合物和方法
CN110072866A (zh) * 2016-09-13 2019-07-30 密执安大学评议会 作为bet蛋白降解剂的稠合的1,4-二氮杂*
CN113832169A (zh) * 2020-06-24 2021-12-24 厦门大学 靶向HBV cccDNA的药物筛选模型及方法

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN1289510C (zh) * 2003-06-27 2006-12-13 成都地奥制药集团有限公司 一种具有抗病毒活性的化合物及其制备方法
KR102434357B1 (ko) * 2011-06-30 2022-08-18 애로우헤드 파마슈티컬스 인코포레이티드 B형 간염 바이러스의 유전자 발현 저해용 조성물 및 방법
CN110812472B (zh) * 2019-11-19 2022-10-21 福建医科大学 E3泛素连接酶stub1在抑制乙型肝炎病毒复制中的应用
US20240270780A1 (en) * 2020-04-29 2024-08-15 Tai Bi Di Pharmaceutical Technology (Shijiazhuang) Co. Ltd Proteolysis targeting compound with tissue targeting capability and use thereof
CN113321700B (zh) * 2020-06-02 2022-07-01 泰比瑞医药科技(石家庄)有限公司 一种降解靶蛋白的双功能化合物及其用途
WO2022156764A1 (zh) * 2021-01-22 2022-07-28 泰比棣医药科技(石家庄)有限公司 一种降解脱氧核糖核酸(dna)聚合酶的化合物及其用途

Patent Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103881979A (zh) * 2014-03-20 2014-06-25 北京大学 抗丙肝病毒药物高通量筛选模型及其应用
WO2016146985A1 (en) * 2015-03-13 2016-09-22 University Of Dundee Derivatives of 1-[(cyclopentyl or 2-pyrrolidinyl)carbonylaminomethyl]-4-(1,3-thiazol-5-yl) benzene which are useful for the treatment of proliferative, autoimmune or inflammatory diseases
CN108601764A (zh) * 2015-03-18 2018-09-28 阿尔维纳斯股份有限公司 用于靶蛋白的增强降解的化合物和方法
WO2017011590A1 (en) * 2015-07-13 2017-01-19 Arvinas, Inc. Alanine-based modulators of proteolysis and associated methods of use
CN110072866A (zh) * 2016-09-13 2019-07-30 密执安大学评议会 作为bet蛋白降解剂的稠合的1,4-二氮杂*
CN113832169A (zh) * 2020-06-24 2021-12-24 厦门大学 靶向HBV cccDNA的药物筛选模型及方法

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
HUANG YING-NAN,WU HAO,SHEN XI-ZHONG: "Progress in the antiviral treatment of HBV-related cirrhosis", FUDAN UNIVERSITY JOURNAL OF MEDICAL SCIENCES, vol. 40, no. 2, 15 March 2013 (2013-03-15), pages 233 - 238, XP055952027, ISSN: 1672-8467, DOI: 10.3969/j.issn.1672-8467.2013.02.020 *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN116297415A (zh) * 2023-05-11 2023-06-23 细胞生态海河实验室 一种protac药物的筛选方法及载体
CN116297415B (zh) * 2023-05-11 2023-08-18 细胞生态海河实验室 一种protac药物的筛选方法及载体

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