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WO2019110209A1 - Cd47 and bcma/taci antigen-binding molecules - Google Patents

Cd47 and bcma/taci antigen-binding molecules Download PDF

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Publication number
WO2019110209A1
WO2019110209A1 PCT/EP2018/079932 EP2018079932W WO2019110209A1 WO 2019110209 A1 WO2019110209 A1 WO 2019110209A1 EP 2018079932 W EP2018079932 W EP 2018079932W WO 2019110209 A1 WO2019110209 A1 WO 2019110209A1
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WIPO (PCT)
Prior art keywords
amino acid
acid sequence
seq
antigen
binding
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PCT/EP2018/079932
Other languages
French (fr)
Inventor
Jerome Douglas BOYD-KIRKUP
Dipti THAKKAR
Piers INGRAM
Zhihao WU
Konrad PASZKIEWICZ
Peter Brauer
Vicente SANCENON
Siyu GUAN
Original Assignee
Hummingbird Bioscience Holdings Pte. Ltd.
CLEGG, Richard Ian
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Application filed by Hummingbird Bioscience Holdings Pte. Ltd., CLEGG, Richard Ian filed Critical Hummingbird Bioscience Holdings Pte. Ltd.
Publication of WO2019110209A1 publication Critical patent/WO2019110209A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/2803Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/70575NGF/TNF-superfamily, e.g. CD70, CD95L, CD153, CD154
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/2803Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
    • C07K16/2827Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily against B7 molecules, e.g. CD80, CD86
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/2878Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the NGF-receptor/TNF-receptor superfamily, e.g. CD27, CD30, CD40, CD95
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/505Medicinal preparations containing antigens or antibodies comprising antibodies
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • A61P35/02Antineoplastic agents specific for leukemia
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/20Immunoglobulins specific features characterized by taxonomic origin
    • C07K2317/24Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/30Immunoglobulins specific features characterized by aspects of specificity or valency
    • C07K2317/31Immunoglobulins specific features characterized by aspects of specificity or valency multispecific
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/30Immunoglobulins specific features characterized by aspects of specificity or valency
    • C07K2317/33Crossreactivity, e.g. for species or epitope, or lack of said crossreactivity
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/52Constant or Fc region; Isotype
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/52Constant or Fc region; Isotype
    • C07K2317/526CH3 domain
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/60Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments
    • C07K2317/62Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments comprising only variable region components
    • C07K2317/622Single chain antibody (scFv)
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/70Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
    • C07K2317/73Inducing cell death, e.g. apoptosis, necrosis or inhibition of cell proliferation
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/70Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
    • C07K2317/76Antagonist effect on antigen, e.g. neutralization or inhibition of binding
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/90Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
    • C07K2317/92Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/90Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
    • C07K2317/94Stability, e.g. half-life, pH, temperature or enzyme-resistance
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide

Definitions

  • the present invention relates to the fields of molecular biology, more specifically antibody technology.
  • the present invention also relates to methods of medical treatment and prophylaxis.
  • CD47 is the“don’t-eat-me” signal and is ubiquitously expressed on normal cells where binding to SIRPa on macrophages inhibits phagocytosis. CD47 is commonly over-expressed in tumors where it correlates with immune evasion and poor prognosis. Blocking CD47-SIRPalpha interaction restores macrophage phagocytosis of tumor cells and anti-CD47 mAbs have shown anti-tumor efficacy in mouse models of solid tumors and hematological malignancies.
  • CD47 Despite the widespread expression of CD47 decreases the bioavailability of anti-CD47 mAbs at the tumor due to antigen sink effects, and also risks off-target toxicities, most substantially from cross-linking of erythrocytes that show high expression of CD47.
  • BCMA is expressed on cells of multiple myeloma, and the anti-BCMA antibody-drug conjugate J6M0- mcMMAF (GSK2857916) has been investigated for the treatment of multiple myeloma (see e.g. Tai et al., Blood. (2014) 123(20): 3128-3138). BCMA is also expressed by cells of B cell malignancies such as Hodgkin’s lymphoma, non-Hodgkin’s lymphoma (e.g.
  • Burkitt lymphoma Burkitt lymphoma
  • lymphocytic leukemia and the BCMA/TACI antagonist Atacicept has been investigated as an agent for use in the treatment of multiple myeloma, B-cell chronic lymphocytic leukemia, and non-Hodgkin's lymphoma (Vasiliou, Drugs Fut 2008, 33(11 ): 921 ).
  • WO 2014/087248 A2 discloses monospecific anti-CD47 antibodies having an affinity for human CD47 as high as -23.6 nM.
  • the high-affinity CD47 antibodies disclosed therein induce substantial
  • MM Multiple myeloma
  • the current treatment landscape for MM patients includes diverse classes of first and second generation agents administered as single therapy or in combination, including alkylating agents, histone deacetylase inhibitors, proteasome inhibitors, immunomodulatory drugs, monoclonal antibodies, and autologous stem cell transplantation.
  • Emerging therapies such as PD1/PD-L1 antibodies have shown severe adverse toxicity effects in clinical trials.
  • the present invention provides an antigen-binding molecule, optionally isolated, which is capable of binding to CD47 and BCMA and/or TACI.
  • the antigen-binding molecule comprises (i) an antigen-binding domain capable of binding to CD47, and (ii) an antigen-binding domain capable of binding to BCMA and/or TACI.
  • an antigen-binding molecule optionally isolated, which is capable of binding to BCMA. Also provided is an antigen-binding molecule, optionally isolated, which is capable of binding to TACI. Also provided is an antigen-binding molecule, optionally isolated, which is capable of binding to BCMA and/or TACI.
  • an antigen-binding molecule optionally isolated, which is capable of binding to CD47 in extracellular region 1.
  • the antigen-binding molecule is capable of binding to the V-type Ig-like domain of CD47. In some embodiments the antigen-binding molecule is capable of binding to a polypeptide comprising or consisting of the amino acid sequence shown in SEQ ID NO:9. In some embodiments the antigen-binding molecule is capable of inhibiting interaction between CD47 and SIRPa. In some embodiments the antigen-binding molecule is capable of increasing phagocytosis of CD47-expressing cells.
  • the antigen-binding molecule is capable of binding to a peptide or polypeptide comprising or consisting of the amino acid sequence of SEQ ID NO:21. In some embodiments the antigen-binding molecule comprises:
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:220
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:221
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:224; or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:24
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:25
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:24
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:25
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • VL light chain variable
  • LC-CDR1 having the amino acid sequence of SEQ ID NO: 190
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • VL light chain variable
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:24
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:25
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • VL light chain variable
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • VL light chain variable
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • VL light chain variable
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:193;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:24
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:25
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26;
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26;
  • VL light chain variable
  • LC-CDR1 having the amino acid sequence of SEQ ID NO:32
  • LC-CDR2 having the amino acid sequence of SEQ ID NO:33
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:24
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:25
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26;
  • VL light chain variable
  • LC-CDR1 having the amino acid sequence of SEQ ID NO: 190
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26;
  • VL light chain variable
  • LC-CDR1 having the amino acid sequence of SEQ ID NO: 190
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:24
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:25
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26;
  • VL light chain variable
  • LC-CDR1 having the amino acid sequence of SEQ ID NO: 191
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26;
  • VL light chain variable
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26;
  • VL light chain variable
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26;
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO: 193.
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:23, 39, 229, 178, 180, 181 , 182 or 183;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:31 , 44, 230, 179, 184, 185, 186 or 187.
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:23;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:31 ;
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:39;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:44
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:229;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:230;
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 178;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:179;
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 180;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:179;
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 181 ;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 179;
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 182;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:179;
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 183;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:179;
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 182;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:184;
  • (x) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 183; and a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:184;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:185;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:185;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:186;
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 183;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 187.
  • the antigen-binding molecule is capable of binding to a peptide or polypeptide comprising or consisting of the amino acid sequence of SEQ ID NO:22.
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:50
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:51
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:52,
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:60;
  • VH heavy chain variable region incorporating the following CDRs: HC-CDR1 having the amino acid sequence of SEQ ID NO:50
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:51
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:52;
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:60.
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:49;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:57.
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:66
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:67
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:68,
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:76;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:66
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:67
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:68;
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:76.
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:65; and a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:73.
  • the present invention provides an antigen-binding molecule, optionally isolated, comprising (i) an antigen-binding molecule according to the invention, and (ii) an antigen-binding molecule capable of binding to an antigen other than CD47.
  • the antigen-binding molecule capable of binding to an antigen other than CD47 is capable of binding to BCMA and/or TACI.
  • the present invention provides an antigen-binding molecule, optionally isolated, which is capable of binding to CD47 and BCMA and/or TACI.
  • the antigen-binding molecule comprises (i) an antigen-binding molecule capable of binding to CD47, and (ii) an antigen-binding molecule capable of binding to BCMA and/or TACI.
  • the antigen-binding molecule capable of binding to BCMA is capable of binding to the extracellular domain of BCMA.
  • the antigen-binding molecule capable of binding to TACI is capable of binding to the extracellular domain of TACI.
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 103
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 104
  • HC-CDR3 having the amino acid sequence of SEQ ID NO: 105,
  • VL light chain variable
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:1 13;
  • VH heavy chain variable
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 103
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 104
  • HC-CDR3 having the amino acid sequence of SEQ ID NO: 105;
  • VL light chain variable
  • LC-CDR1 having the amino acid sequence of SEQ ID NO: 1 1 1
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 1 12
  • LC-CDR3 having the amino acid sequence of SEQ ID NO: 1 13.
  • VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:102;
  • VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 1 10.
  • the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI which comprises or consists of a polypeptide comprising a BCMA- or TACI- binding amino acid sequence.
  • the BCMA- or TACI-binding amino acid sequence is derived from a ligand for BCMA and/or TACI.
  • the BCMA- or TACI-binding amino acid sequence comprises or consists of a BCMA- or TACI-binding amino acid sequence derived from APRIL.
  • the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI which comprises or consists of:
  • the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI which comprises or consists of:
  • the antigen-binding molecule is capable of binding to cells expressing CD47,
  • BCMA and/or TACI at the cell surface are BCMA and/or TACI at the cell surface.
  • the antigen-binding molecule is capable of inhibiting interaction between CD47 and SIRPa.
  • the antigen-binding molecule is capable of increasing phagocytosis of CD47- expressing cells. In some embodiments the antigen-binding molecule does not induce substantial hemagglutination.
  • the present invention provides a chimeric antigen receptor (CAR) comprising an antigen-binding molecule according to the invention.
  • CAR chimeric antigen receptor
  • the present invention provides an antigen-binding molecule, optionally isolated, which is capable of binding to BCMA and/or TACI, which comprises, or consists of, a polypeptide comprising a BCMA- or TACI-binding amino acid sequence.
  • the BCMA- or TACI-binding amino acid sequence comprises or consists of a BCMA- or TACI-binding amino acid sequence derived from APRIL.
  • the antigen-binding molecule comprises a polypeptide capable of binding to BCMA and/or TACI which comprises or consists of:
  • the antigen-binding molecule comprises a polypeptide capable of binding to BCMA and/or TACI which comprises or consists of:
  • the antigen-binding molecule further comprises an antigen-binding domain capable of binding to an antigen other than BCMA and TACI.
  • the antigen other than BCMA and TACI is CD47.
  • the present invention provides a nucleic acid, or a plurality of nucleic acids, optionally isolated, encoding an antigen-binding molecule or a CAR according to the invention.
  • the present invention provides an expression vector, or a plurality of expression vectors, comprising a nucleic acid or a plurality of nucleic acids according to the invention.
  • the present invention provides a cell comprising an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, or an expression vector or a plurality of expression vectors according to the invention.
  • the present invention provides a method comprising culturing a cell comprising a nucleic acid or a plurality of nucleic acids, or an expression vector or a plurality of expression vectors according to the invention, under conditions suitable for expression of the antigen-binding molecule or CAR from the nucleic acid(s) or expression vector(s).
  • the present invention provides a composition comprising an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, an expression vector or a plurality of expression vectors, or a cell according to the invention.
  • the present invention provides an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, an expression vector or a plurality of expression vectors, a cell, or a composition according to the invention for use in a method of medical treatment or prophylaxis.
  • the present invention provides an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, an expression vector or a plurality of expression vectors, a cell, or a composition according to the invention for use in a method of treatment or prevention of a cancer.
  • the present invention provides the use of an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, an expression vector or a plurality of expression vectors, a cell, or a composition according to the invention in the manufacture of a medicament for use in a method of treatment or prevention of a cancer.
  • the present invention provides a method of treating or preventing a cancer, comprising administering to a subject a therapeutically or prophylactically effective amount of an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, an expression vector or a plurality of expression vectors, a cell, or a composition according to the invention.
  • the present invention provides a method for increasing phagocytosis of CD47- expressing cells, comprising contacting CD47-expressing cells with an antigen-binding molecule according to the invention.
  • the present invention provides an in vitro complex, optionally isolated, comprising an antigen-binding molecule according to the invention bound to CD47, BCMA and/or TACI. In another aspect the present invention provides an in vitro complex, optionally isolated, comprising an antigenbinding molecule according to the invention bound to BCMA and/or TACI.
  • the present invention provides a method comprising contacting a sample containing, or suspected to contain, CD47, BCMA and/or TACI with an antigen-binding molecule according to the invention, and detecting the formation of a complex of the antigen-binding molecule with CD47, BCMA and/or TACI.
  • the present invention provides a method comprising contacting a sample containing, or suspected to contain, BCMA and/or TACI with an antigen-binding molecule according to the invention, and detecting the formation of a complex of the antigen-binding molecule with BCMA and/or TACI.
  • the present invention provides a subject for treatment with a CD47-targeted agent, a BCMA-targeted agent and/or a TACI-targeted agent, the method comprising contacting, in vitro, a sample from the subject with an antigen-binding molecule according to the invention and detecting the formation of a complex of the antigen-binding molecule with CD47, BCMA and/or TACI.
  • the present invention provides a subject for treatment with a BCMA-targeted agent and/or a TACI-targeted agent, the method comprising contacting, in vitro, a sample from the subject with an antigen-binding molecule according to the invention and detecting the formation of a complex of the antigen-binding molecule with BCMA and/or TACI.
  • the present invention provides the use of an antigen-binding molecule according to the invention as an in vitro or in vivo diagnostic or prognostic agent.
  • the cancer is selected from: a hematologic malignancy, a myeloid hematologic malignancy, a lymphoblastic hematologic malignancy, a B cell malignancy, multiple myeloma (MM), myelodysplastic syndrome (MDS), acute myeloid leukemia (AML), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), lymphocytic leukemia, lymphoma, B cell lymphoma, Hodgkin’s lymphoma (HL), non-Hodgkin’s lymphoma (NHL), Burkitt lymphoma, bladder cancer, brain cancer, glioblastoma, ovarian cancer, breast cancer, colon cancer, liver cancer, hepatocellular carcinoma, prostate cancer, lung cancer, Non-small Cell Lung Cancer (NSCLC), skin cancer and melanoma.
  • MM myelodysplastic syndrome
  • AML acute myeloid leukemia
  • CML chronic mye
  • the present invention provides antigen-binding molecules having combinations of desirable biophysical and/or functional properties as compared to antigen-binding molecules disclosed in the prior art.
  • MM multiple myeloma
  • CD47, BCMA and TACI are highly co-expressed in all characterized MM cell lines and many patient samples, and play functional roles that reduce risk of antigen loss. Their expression levels are prognostic of the progression and outcome of MM.
  • Overexpression of CD47 is utilized by malignant hematopoietic cells to prevent macrophage clearance and evade immunesurveillance in the bone marrow microenvironment.
  • APRIL secreted by bone marrow osteoclast activates BCMA/TACI receptors in multiple myeloma cells, and induces the upregulation of antiapoptotic, immunosuppressive, and osteoclastogenic genes through the canonical and non-canonical NF-kB pathway.
  • aspects of the present invention relate to antigen-binding molecules capable of binding to both CD47 and BCMA and/or TACI.
  • the bispecific CD47-binding, BCMA/TACI-binding antigen-binding molecules described herein display preferential binding to cells expressing both CD47 and BCMA/TACI, and are therefore useful for targeting myeloid hematologic malignancies, e.g. multiple myeloma. They represent an improved treatment for myeloid hematologic malignancies as compared e.g. to CD47-binding antibodies of the prior art, because the BCMA/TACI-binding arm targets the CD47-binding arm to the cancer cells, minimising off-target effects.
  • antigen-binding molecules which bind to human CD47 with high affinity, are cross-reactive with non-human primate CD47, preferentially bind to CD47- and BCMA/TACI- expressing cells, display potent inhibition of interaction between CD47 and SIRPa, and do not induce hemagglutination.
  • Human CD47 (also known as IAP, MER6 and OA3) is the protein identified by UniProt Q08722.
  • isoform OA3-323 (UniProt: Q08722-1 , v1 ; SEQ ID NO:1 ); isoform OA3-293 (UniProt: Q08722-2; SEQ ID NO:2), which lacks the amino acid sequence corresponding to positions 293 to 323 of SEQ ID NO:1 ; isoform OA3-305 (UniProt: Q08722-3; SEQ ID NO:3), which comprises the substitutions K304N and A305N relative to SEQ ID NO:1 , and which lacks the amino acid sequence corresponding to positions 306 to 323 of SEQ ID NO:1 ; and isoform OA3-312 (UniProt: Q08722-4; SEQ ID NO:4), which lacks the amino acid sequence corresponding to positions 312 to 323 of SEQ ID NO:1.
  • the N-terminal 18 amino acids of SEQ ID NOs:1 to 4 constitute a signal peptide, and so the mature form of isoforms OA3-323, OA3-293, OA3-305 and OA3-312 (i.e. after processing to remove the signal peptide) have the amino acid sequences shown in SEQ ID NOs:5 to 8, respectively.
  • CD47 The structure and function of CD47 is reviewed e.g. in Sick et al., Br J Pharmacol. (2012) 167(7): 1415- 1430 and Willingham et al. Proc Natl Acad Sci U S A. (2012) 109(17): 6662-6667, both of which are hereby incorporated by reference in its entirety.
  • CD47 is a ubiquitously-expressed ⁇ 50 kDa multi-pass membrane receptor that belongs to the immunoglobulin superfamily, comprising an N-terminal extracellular region (SEQ ID NO:10) having a V-type Ig-like domain (SEQ ID NO:9), five transmembrane domains (SEQ ID NOs:11 , 13, 15, 17 and 19), and a short C-terminal intracellular tail (SEQ ID NO:20).
  • CD47 is involved in cell-to-cell communication through ligating to the transmembrane signal-regulatory proteins (SIRPs) SIRPa and SIRPy and integrins (e.g. anb3 integrin), and also mediates cell-extracellular matrix interactions through binding to thrombospondin-1 (TSP-1 ).
  • SIRPs transmembrane signal-regulatory proteins
  • SIRPa and SIRPy and integrins e.g. anb3 integrin
  • TSP-1 thrombospondin-1
  • CD47 is involved in a wide range of cellular processes including adhesion, migration, proliferation and apoptosis, and plays a key role in immune processes and angiogenesis.
  • CD47 is the ligand for SIRPa, which expressed on macrophages and dendritic cells. Binding of CD47 to SIRPa on the surface of phagocytic cells, triggers SIRPa ITIM signalling, inhibiting phagocytosis of the CD47 expressing cell.
  • CD47 is a multi-pass transmembrane protein, whereas SIRPa consists of 4 extracellular domains and an intracellular ITIM-domain. The terminal V-set domain of SIRPa interacts with the Ig V-like domain of CD47.
  • SIRPa Upon binding CD47, SIRPa initiates a signalling cascade that results in the inhibition of phagocytosis of the CD47-expressing cell.
  • This“don't eat me” signal is transmitted by phosphorylation by Src kinases of immunoreceptor tyrosine-based inhibitor motifs (ITIMs) in the cytoplasmic domain of SIRPa.
  • ITIMs immunoreceptor tyrosine-based inhibitor motifs
  • SH2 Src homology-2
  • SHP-1 and SHP-2 blocks phagocytosis, potentially through preventing the accumulation of myosin-IIA at the phagocytic synapse.
  • Disrupting the interaction along the antiparallel beta sheets of CD47 prevents downstream ITIM-mediated signalling, enabling phagocytes to‘eat’ and destroy cancer cells.
  • CD47 expression/activity is implicated in the development and progression of many cancers, and accumulating evidence suggests that cell-surface expression of CD47 is a common mechanism by which cancer cells protect themselves from phagocytosis.
  • CD47 refers to CD47 from any species and includes CD47 isoforms, fragments, variants or homologues from any species.
  • a“fragment”,“variant” or“homologue” of a protein may optionally be characterised as having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of the reference protein (e.g. a reference isoform).
  • fragments, variants, isoforms and homologues of a reference protein may be characterised by ability to perform a function performed by the reference protein.
  • A“fragment” generally refers to a fraction of the reference protein.
  • A“variant” generally refers to a protein having an amino acid sequence comprising one or more amino acid substitutions, insertions, deletions or other modifications relative to the amino acid sequence of the reference protein, but retaining a considerable degree of sequence identity (e.g. at least 60%) to the amino acid sequence of the reference protein.
  • An“isoform” generally refers to a variant of the reference protein expressed by the same species as the species of the reference protein (e.g. OA3-323, OA3-293, OA3-305 and OA3-312 are all isoforms of one another).
  • A“homologue” generally refers to a variant of the reference protein produced by a different species as compared to the species of the reference protein.
  • human CD47 isoform OA3-323 (Q08722-1 , v1 ; SEQ ID NO:1 ) and Rhesus macaque CD47 (UniProt: F7F5Y9-1 , v2; SEQ ID NO:145) are homologues of one another.
  • Homologues include orthologues.
  • A“fragment” of a reference protein may be of any length (by number of amino acids), although may optionally be at least 25% of the length of the reference protein (that is, the protein from which the fragment is derived) and may have a maximum length of one of 50%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% of the length of the reference protein.
  • a fragment of CD47 may have a minimum length of one of 10, 20, 30, 40, 50, 100, 150, 200, 250 or 300 amino acids, and may have a maximum length of one of 20, 30, 40, 50, 100, 150, 200, 250 or 300 amino acids.
  • the CD47 is CD47 from a mammal (e.g. a primate (rhesus, cynomolgous, nonhuman primate or human) and/or a rodent (e.g. rat or murine) CD47).
  • Isoforms, fragments, variants or homologues of CD47 may optionally be characterised as having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of an immature or mature CD47 isoform from a given species, e.g. human.
  • Isoforms, fragments, variants or homologues may optionally be functional isoforms, fragments, variants or homologues, e.g. having a functional property/activity of the reference CD47 (e.g. human CD47 isoform OA3-323), as determined by analysis by a suitable assay for the functional property/activity.
  • an isoform, fragment, variant or homologue of CD47 may display association with one or more of: SIRPa, SIRPy, TSP-1 and anb3 integrin.
  • the CD47 comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to one of SEQ ID NOs:1 to 8.
  • a fragment of CD47 comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to one of SEQ ID NO:9 or 10.
  • CD47 is an attractive therapeutic target.
  • CD47 is usually expressed on the surface of normal healthy cells and migrating hematopoietic stem cells to prevent phagocytosis, and is upregulated in nearly all hematological and solid tumors, including MM cells, to evade immune surveillance and escape phagocytosis.
  • Disrupting the interaction between CD47 and SIRPa enables phagocytes to“eat” and destroy cancer cells.
  • CD47 blockade repolarises tumor-associated macrophages into a pro-inflammatory, anti-tumor state, and clearance of malignant cells by phagocytic cells offers an additional route for neoantigen presentation to adaptive immune system.
  • Human B cell maturation antigen (BCMA; also known as TNFRSF17) is the protein identified by UniProt Q02223. Alternative splicing of mRNA encoded by the human TNFRSF17 gene yields two isoforms: isoform 1 (UniProt: Q02223-1 , v2; SEQ ID NO:95) and isoform 2 (UniProt: Q02223-2; SEQ ID NO:96), in which the amino acid sequence corresponding to positions 44 to 93 of SEQ ID NO:95 are substituted with “R”.
  • BCMA Human B cell maturation antigen
  • BCMA is a cell surface receptor of the TNF receptor superfamily.
  • BCMA comprises an N-terminal extracellular domain (SEQ ID NO:97) having a cysteine-rich TNFR repeat region (SEQ ID NO:98).
  • the extracellular domain is connected by a transmembrane domain (SEQ ID NO:99) to a cytoplasmic domain (SEQ ID NO: 100), containing a region which is important for TRAF interaction and activation of NFKB (SEQ ID NO:101 ; Hatzoglou et al., J Immunol. (2000) 165(3): 1322-30).
  • BCMA is expressed by mature B lymphocytes, and plays an important role in differentiation of B cells into plasma cells (see Tai and Anderson, Immunotherapy (2015) 7(11 ): 1 187-1199, which is hereby incorporated by reference in its entirety).
  • BCMA is expressed by B-cell lineage cells, particularly in the interfollicular region of the germinal center, by plasmablasts and by differentiated plasma cells. BCMA expression is selectively induced during plasma cell differentiation. BCMA may enhance humoral immunity by stimulating the survival of normal plasma cells and plasmablasts, but is absent on naive and most memory B cells.
  • BCMA is also expressed by CD138 BDCA-4 + plasmacytoid dendritic cells
  • BCMA B cell activation factor
  • APRIL proliferation-inducing ligand
  • BCMA refers to BCMA from any species and includes BCMA isoforms, fragments, variants or homologues from any species.
  • a fragment of BCMA may have a minimum length of one of 10, 20, 30, 40, 50, 100, 150 or 175 amino acids, and may have a maximum length of one of 20, 30, 40, 50, 100, 125, 150 or 175 amino acids.
  • the BCMA is BCMA from a mammal (e.g. a primate (rhesus, cynomolgous, or human) and/or a rodent (e.g. rat or murine) BCMA).
  • Isoforms, fragments, variants or homologues of BCMA may optionally be characterised as having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of an immature or mature BCMA isoform from a given species, e.g. human.
  • Isoforms, fragments, variants or homologues may optionally be functional isoforms, fragments, variants or homologues, e.g. having a functional property/activity of the reference BCMA (e.g. human BCMA isoform 1 ), as determined by analysis by a suitable assay for the functional property/activity.
  • an isoform, fragment, variant or homologue of BCMA may display association with e.g. BAFF and/or APRIL.
  • the BCMA comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:95 or 96.
  • a fragment of BCMA comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:97.
  • Transmembrane activator and CAML interactor (TACI; also known as TNFRSF13B) is the protein identified by UniProt 014836.
  • Alternative splicing of mRNA encoded by the human TNFRSF13B gene yields three isoforms: isoform 1 (UniProt: 014836-1 , v1 ; SEQ ID NO:260), isoform 2 (UniProt: 014836-2; SEQ ID NO:261 ), in which the amino acid sequence corresponding to positions 21 to 67 of SEQ ID NO:260 are substituted with“W”, and isoform 3 (UniProt: 014836-3; SEQ ID NO:262), in which the amino acid sequence corresponding to positions 150 to 176 of SEQ ID NO:260 are substituted with a 27 amino acid sequence, and lacking the amino acid sequence corresponding to positions 177 to 293 of SEQ ID NO:260.
  • TACI is a cell surface receptor of the TNF receptor superfamily, and comprises an N-terminal extracellular domain (SEQ ID NO:263) having two cysteine-rich TNFR repeat regions (SEQ ID NOs:264 and 265). The extracellular domain is connected by a transmembrane domain (SEQ ID NO:266) to a cytoplasmic domain (SEQ ID NO:267).
  • TACI is expressed by B lymphocytes, and is the receptor for calcium-modulator and cyclophilin ligand (CAML), BAFF and APRIL (Wu et al., Journal of Biological Chemistry (2000) 275 (45):35478-85).
  • APRIL calcium-modulator and cyclophilin ligand
  • BAFF and APRIL signal through TACI, inducing activation of several transcription factors including NFAT, AP-1 , and NFKB.
  • TACI expression is upregulated in B cell malignancies such as multiple myeloma (MM).
  • MM cell lines and fresh tumor samples from patients have been shown to bind soluble BAFF and express BCMA, TACI, and BAFF-R, and BAFF modulates the proliferative capacity of cytokine-stimulated MM cells, likely through its ability to promote survival via signalling through these receptors (Novak et al., Blood (2004) 103:689- 694).
  • TACI refers to TACI from any species and includes TACI isoforms, fragments, variants or homologues from any species.
  • a fragment of TACI may have a minimum length of one of 10, 20, 30, 40, 50, 100, 150, 200 or 250 amino acids, and may have a maximum length of one of 20, 30, 40, 50, 100, 125, 150, 200 or 250 amino acids.
  • the TACI is TACI from a mammal (e.g. a primate (rhesus, cynomolgous, or human) and/or a rodent (e.g. rat or murine) TACI).
  • Isoforms, fragments, variants or homologues of TACI may optionally be characterised as having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of an immature or mature TACI isoform from a given species, e.g. human.
  • Isoforms, fragments, variants or homologues may optionally be functional isoforms, fragments, variants or homologues, e.g. having a functional property/activity of the reference TACI (e.g. human TACI isoform 1 ), as determined by analysis by a suitable assay for the functional property/activity.
  • TACI e.g. human TACI isoform 1
  • an isoform, fragment, variant or homologue of TACI may display association with e.g. BAFF and/or APRIL.
  • the TACI comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:260, 261 or 262.
  • a fragment of TACI comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:263.
  • BCMA and TACI are attractive therapeutic targets.
  • BCMA and TACI are differentially expressed during the differentiation of immature B cells to mature plasma cells, and are highly expressed in MM cell lines and CD138+ cells from MM patients.
  • Binding of APRIL to BCMA/TACI promotes cell survival, proliferation, and immunosuppression through the canonical and non-canonical NF-kB signalling pathways. Disrupting the interaction between APRIL and BCMA/TACI with competitive antagonists will inhibit downstream BCMA/TACI-mediated signalling.
  • the present invention provides antigen-binding molecules.
  • the antigen-binding molecules are capable of binding to CD47.
  • the antigen-binding molecules are capable of binding to BCMA and/or TACI.
  • the antigen-binding molecules are capable of binding to CD47 and BCMA and/or TACI.
  • the antigen-binding molecules comprise (i) an antigen-binding domain capable of binding to CD47 and (ii) an antigen-binding domain capable of binding to BCMA and/or TACI.
  • An“antigen-binding molecule” refers to a molecule which is capable of binding to a target antigen, and encompasses monoclonal antibodies, polyclonal antibodies, monospecific and multispecific antibodies (e.g., bispecific antibodies), and antibody fragments (e.g. Fv, scFv, Fab, scFab, F(ab’)2, Fab ⁇ , diabodies, triabodies, scFv-Fc, minibodies, single domain antibodies (e.g. VhH), etc.), as long as they display binding to the relevant target molecule(s).
  • monospecific and multispecific antibodies e.g., bispecific antibodies
  • antibody fragments e.g. Fv, scFv, Fab, scFab, F(ab’)2, Fab ⁇ , diabodies, triabodies, scFv-Fc, minibodies, single domain antibodies (e.g. VhH), etc.
  • the antigen-binding molecule of the present invention comprises a moiety or moieties capable of binding to a target antigen(s).
  • the moiety capable of binding to a target antigen comprises an antibody heavy chain variable region (VH) and an antibody light chain variable region (VL) of an antibody capable of specific binding to the target antigen.
  • the moiety capable of binding to a target antigen comprises or consists of an aptamer capable of binding to the target antigen, e.g. a nucleic acid aptamer (reviewed, for example, in Zhou and Rossi Nat Rev Drug Discov. 2017 16(3): 181-202).
  • the moiety capable of binding to a target antigen comprises or consists of a antigen-binding peptide/polypeptide, e.g. a peptide aptamer, thioredoxin, monobody, anticalin, Kunitz domain, avimer, knottin, fynomer, atrimer, DARPin, affibody, nanobody (i.e. a singledomain antibody (sdAb)) affilin, armadillo repeat protein (ArmRP), OBody or fibronectin - reviewed e.g. in Reverdatto et al., Curr Top Med Chem.
  • a antigen-binding peptide/polypeptide e.g. a peptide aptamer, thioredoxin, monobody, anticalin, Kunitz domain, avimer, knottin, fynomer, atrimer, DARPin, affibody, nanobody (i.e. a singledomain antibody (
  • the antigen-binding molecules of the present invention generally comprise an antigen-binding domain comprising a VH and a VL of an antibody capable of specific binding to the target antigen.
  • the antigenbinding domain formed by a VH and a VL may also be referred to herein as an Fv region.
  • the antigen-binding molecules of the present invention comprise antigen-binding moieties derived from a ligand for the target antigen.
  • An antigen-binding molecule may be, or may comprise, an antigen-binding polypeptide, or an antigenbinding polypeptide complex.
  • An antigen-binding molecule may comprise more than one polypeptide which together form an antigen-binding domain.
  • the polypeptides may associate covalently or non- covalently.
  • the polypeptides form part of a larger polypeptide comprising the polypeptides (e.g. in the case of scFv comprising VH and VL, or in the case of scFab comprising VH-CH1 and VL-CL).
  • An antigen-binding molecule may refer to a non-covalent or covalent complex of more than one polypeptide (e.g. 2, 3, 4, 6, or 8 polypeptides), e.g. an IgG-like antigen-binding molecule comprising two heavy chain polypeptides and two light chain polypeptides.
  • polypeptide e.g. 2, 3, 4, 6, or 8 polypeptides
  • IgG-like antigen-binding molecule comprising two heavy chain polypeptides and two light chain polypeptides.
  • the antigen-binding molecules of the present invention may be designed and prepared using the sequences of monoclonal antibodies (mAbs) capable of binding to CD47, BCMA or TACI.
  • Antigen-binding regions of antibodies such as single chain variable fragment (scFv), Fab and F(ab’)2 fragments may also be used/provided.
  • An“antigen-binding region” is any fragment of an antibody which is capable of binding to the target for which the given antibody is specific.
  • antigen-binding molecules of the present invention may be designed and prepared from the amino acid sequence of a ligand for the target antigen (e.g. BCMA and/or TACI).
  • target antigen e.g. BCMA and/or TACI
  • Antibodies generally comprise six complementarity-determining regions CDRs; three in the heavy chain variable (VH) region: HC-CDR1 , HC-CDR2 and HC-CDR3, and three in the light chain variable (VL) region: LC-CDR1 , LC-CDR2, and LC-CDR3.
  • the six CDRs together define the paratope of the antibody, which is the part of the antibody which binds to the target antigen.
  • VH region and VL region comprise framework regions (FRs) either side of each CDR, which provide a scaffold for the CDRs.
  • FRs framework regions
  • VH regions comprise the following structure: N term-[HC-FR1]-[HC-CDR1]-[HC-FR2]-[HC-CDR2]-[HC-FR3]-[HC-CDR3]-[HC-FR4]-C term; and VL regions comprise the following structure: N term-[LC-FR1]-[LC-CDR1]-[LC-FR2]-[LC-CDR2]-[LC-FR3]- [LC-CDR3]-[LC-FR4]-C term.
  • the CDRs and FRs of the VH regions and VL regions of the antibody clones described herein were defined according to the international IMGT (ImMunoGeneTics) information system (LeFranc et al., Nucleic Acids Res. (2015) 43 (Database issue):D413-22), which uses the IMGT V-DOMAIN numbering rules as described in Lefranc et al., Dev. Comp. Immunol. (2003) 27:55-77.
  • the antigen-binding molecule comprises the CDRs of an antigen-binding molecule which is capable of binding to CD47. In some embodiments, the antigen-binding molecule comprises the FRs of an antigen-binding molecule which is capable of binding to CD47. In some embodiments, the antigen-binding molecule comprises the CDRs and the FRs of an antigen-binding molecule which is capable of binding to CD47. That is, in some embodiments the antigen-binding molecule comprises the VH region and the VL region of an antigen-binding molecule which is capable of binding to CD47.
  • the antigen-binding molecule comprises a VH region and a VL region which is, or which is derived from, the VH/VL region of a CD47-binding antibody clone described herein (i.e. anti- CD47 antibody clones 1-1-A1_BM, 1-1-A1 , 5-48-A6, 5-48-D2, 11A1 H1 , 11A1 H2, 11A1 H3, 11A1 H4, 11A1 H5, 11A1 H6, 1 1A1 H7, 11A1 H8, 11A1 H9, 1 1A1 H10 or 11A1 H11 ).
  • a CD47-binding antibody clone described herein i.e. anti- CD47 antibody clones 1-1-A1_BM, 1-1-A1 , 5-48-A6, 5-48-D2, 11A1 H1 , 11A1 H2, 11A1 H3, 11A1 H4, 11A1 H5, 11A1 H6, 1 1A1 H7, 11A1 H8,
  • the antigen-binding molecule comprises a VH region according to one of (1 ) to (4) below:
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:24
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:25
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • HC-CDR1 HC- CDR2
  • HC-CDR3 HC-CDR3
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:50
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:51
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:52
  • HC-CDR1 HC- CDR2
  • HC-CDR3 HC-CDR3
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:66
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:67
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:68,
  • HC-CDR1 HC- CDR2
  • HC-CDR3 HC-CDR3
  • HC-CDR1 having the amino acid sequence of SEQ ID NO:220
  • HC-CDR2 having the amino acid sequence of SEQ ID NO:221
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • HC-CDR1 HC- CDR2
  • HC-CDR3 HC-CDR3
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
  • HC-CDR1 HC- CDR2
  • HC-CDR3 HC-CDR3
  • the antigen-binding molecule comprises a VH region according to one of (6) to (15) below:
  • HC-FR1 having the amino acid sequence of SEQ ID NO:27
  • HC-FR2 having the amino acid sequence of SEQ ID NO:28
  • HC-FR3 having the amino acid sequence of SEQ ID NO:29
  • HC-FR4 having the amino acid sequence of SEQ ID NO:30,
  • HC-FR1 HC-FR2
  • HC-FR3 HC-FR4
  • HC-FR4 a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
  • HC-FR1 having the amino acid sequence of SEQ ID NO:40
  • HC-FR2 having the amino acid sequence of SEQ ID NO:41
  • HC-FR3 having the amino acid sequence of SEQ ID NO:42
  • HC-FR4 having the amino acid sequence of SEQ ID NO:43,
  • HC-FR1 having the amino acid sequence of SEQ ID NO:53
  • HC-FR2 having the amino acid sequence of SEQ ID NO:54
  • HC-FR3 having the amino acid sequence of SEQ ID NO:55
  • HC-FR4 having the amino acid sequence of SEQ ID NO:56,
  • HC-FR1 HC-FR2
  • HC-FR3 HC-FR4
  • HC-FR4 a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
  • HC-FR1 having the amino acid sequence of SEQ ID NO:69
  • HC-FR2 having the amino acid sequence of SEQ ID NO:70
  • HC-FR3 having the amino acid sequence of SEQ ID NO:71
  • HC-FR4 having the amino acid sequence of SEQ ID NO:72,
  • HC-FR1 HC-FR2
  • HC-FR3 HC-FR4
  • HC-FR4 a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
  • HC-FR1 having the amino acid sequence of SEQ ID NO: 194
  • HC-FR2 having the amino acid sequence of SEQ ID NO:225
  • HC-FR3 having the amino acid sequence of SEQ ID NO:226
  • HC-FR4 having the amino acid sequence of SEQ ID NO:227,
  • HC-FR1 HC-FR2
  • HC-FR3 HC-FR4
  • HC-FR1 having the amino acid sequence of SEQ ID NO: 194
  • HC-FR2 having the amino acid sequence of SEQ ID NO: 195
  • HC-FR3 having the amino acid sequence of SEQ ID NO: 198
  • HC-FR4 having the amino acid sequence of SEQ ID NO:203,
  • HC-FR1 HC-FR2
  • HC-FR3 HC-FR4
  • HC-FR4 a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
  • HC-FR1 having the amino acid sequence of SEQ ID NO:194
  • HC-FR2 having the amino acid sequence of SEQ ID NO: 195
  • HC-FR3 having the amino acid sequence of SEQ ID NO: 199
  • HC-FR4 having the amino acid sequence of SEQ ID NO:203,
  • HC-FR1 HC-FR2
  • HC-FR3 HC-FR4
  • HC-FR4 a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
  • HC-FR2 having the amino acid sequence of SEQ ID NO: 196
  • HC-FR3 having the amino acid sequence of SEQ ID NO:200
  • HC-FR4 having the amino acid sequence of SEQ ID NO:204,
  • HC-FR1 HC-FR2
  • HC-FR3 HC-FR4
  • HC-FR4 a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
  • HC-FR1 having the amino acid sequence of SEQ ID NO: 194
  • HC-FR2 having the amino acid sequence of SEQ ID NO: 197
  • HC-FR3 having the amino acid sequence of SEQ ID NO:201
  • HC-FR4 having the amino acid sequence of SEQ ID NO:204,
  • HC-FR1 HC-FR2
  • HC-FR3 HC-FR4
  • HC-FR4 a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
  • HC-FR1 having the amino acid sequence of SEQ ID NO: 194
  • HC-FR2 having the amino acid sequence of SEQ ID NO: 197
  • HC-FR3 having the amino acid sequence of SEQ ID NO:202
  • HC-FR4 having the amino acid sequence of SEQ ID NO:203,
  • HC-FR1 HC-FR2
  • HC-FR3 HC-FR4
  • HC-FR4 a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
  • the antigen-binding molecule comprises a VH region comprising the CDRs according to one of (1 ), (2), (3), (4) or (5) above, and the FRs according to one of (6), (7), (8), (9), (10), (1 1 ), (12), (13), (14) or (15) above.
  • the antigen-binding molecule comprises a VH region according to one of (16) to (25) below:
  • VH region comprising the CDRs according to (1 ) and the FRs according to (6).
  • a VH region comprising the CDRs according to (1 ) and the FRs according to (7).
  • the antigen-binding molecule comprises a VH region according to one of (26) to (34) below:
  • VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:23.
  • VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:39.
  • VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:49.
  • VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:65.
  • VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:229.
  • VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO: 178.
  • VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:180.
  • a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO: 181.
  • a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:182.
  • VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:183.
  • the antigen-binding molecule comprises a VL region according to one of (36) to (43) below:
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:60;
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:76;
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:224;
  • LC-CDR1 having the amino acid sequence of SEQ ID NO: 190
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
  • LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
  • LC-CDR3 having the amino acid sequence of SEQ ID NO: 193;
  • the antigen-binding molecule comprises a VL region according to one of (44) to (50) below:
  • the antigen-binding molecule comprises a VL region comprising the CDRs according to one of (36), (37), (38), (39), (40), (41 ), (42) or (43) above, and the FRs according to one of (44), (45), (46), (47), (48), (49) or (50) above.
  • the antigen-binding molecule comprises a VL region according to one of (51 ) to (60) below:
  • VL region comprising the CDRs according to (36) and the FRs according to (44).
  • VL region comprising the CDRs according to (38) and the FRs according to (46).
  • the antigen-binding molecule comprises a VL region according to one of (61 ) to (70) below:
  • VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:31.
  • VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:44.
  • VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:57.
  • VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:73.
  • a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
  • VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
  • VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
  • VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
  • VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
  • VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
  • the antigen-binding molecule comprises a VH region according to any one of (1 ) to (35) above, and a VL region according to any one of (36) to (70) above.
  • the present disclosure provides an antigen-binding molecule capable of binding to BCMA.
  • the present disclosure also provides an antigen-binding molecule capable of binding to TACI.
  • the present disclosure also provides an antigen-binding molecule capable of binding to BCMA and/or TACI.
  • the antigen-binding molecule comprises the CDRs of an antigen-binding molecule which is capable of binding to BCMA and/or TACI. In some embodiments, the antigen-binding molecule comprises the FRs of an antigen-binding molecule which is capable of binding to BCMA and/or TACI. In some embodiments, the antigen-binding molecule comprises the CDRs and the FRs of an antigenbinding molecule which is capable of binding to BCMA and/or TACI. That is, in some embodiments the antigen-binding molecule comprises the VH region and the VL region of an antigen-binding molecule which is capable of binding to BCMA and/or TACI.
  • the antigen-binding molecule antigen-binding molecule which is capable of binding to BCMA is also capable of binding to TACI. That is, in some embodiments the antigen-binding molecule of the present invention comprises the CDRs, FRs, or the CDRs and FRs (i.e. the VH and VL region) of an antigen-binding molecule which is cross-reactive for BCMA and TACI. Antibodies which are crossreactive for BCMA and TACI are described e.g. in WO 2002066516 A2, which is hereby incorporated by reference in its entirety.
  • the antigen-binding molecule comprises a VH region and a VL region which is, or which is derived from, the VH/VL region of a BCMA-binding antibody, a TACI-binding antibody, or an antibody capable of binding to BCMA and TACI.
  • the antigen-binding molecule comprises a VH region and a VL region which is, or which is derived from, the VH/VL region of a BCMA- binding antibody clone described herein, i.e. anti-BCMA antibody clone J6M0 (described e.g. in WO 2012/163805 A1 ).
  • the antigen-binding molecule comprises a VH region according to (71 ):
  • HC-CDR1 having the amino acid sequence of SEQ ID NO: 103
  • HC-CDR2 having the amino acid sequence of SEQ ID NO: 104
  • HC-CDR3 having the amino acid sequence of SEQ ID NO:105,
  • HC-CDR1 HC- CDR2
  • HC-CDR3 HC-CDR3
  • the antigen-binding molecule comprises a VH region according to (72):
  • HC-FR1 having the amino acid sequence of SEQ ID NO: 106
  • HC-FR2 having the amino acid sequence of SEQ ID NO: 107
  • HC-FR3 having the amino acid sequence of SEQ ID NO: 108
  • HC-FR4 having the amino acid sequence of SEQ ID NO:109,
  • HC-FR1 HC-FR2
  • HC-FR3 HC-FR4
  • HC-FR4 a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
  • the antigen-binding molecule comprises a VH region according to (73):
  • the antigen-binding molecule comprises a VH region according to (74):
  • VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
  • the antigen-binding molecule comprises a VL region according to (75):
  • LC-CDR3 having the amino acid sequence of SEQ ID NO: 1 13, or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2, or LC-CDR3 are substituted with another amino acid.
  • the antigen-binding molecule comprises a VL region according to (76):
  • the antigen-binding molecule comprises a VL region according to (77):
  • the antigen-binding molecule comprises a VL region according to (78):
  • VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
  • the antigen-binding molecule comprises a VH region according to any one of (71 ) to (74) above, and a VL region according to any one of (75) to (78) above.
  • the antigen-binding molecule of the present disclosure is capable of binding to BCMA and/or TACI. In some embodiments the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI. In some embodiments the antigen-binding molecule or antigen-binding domain comprises a polypeptide comprising, or consisting of, an amino acid sequence which is capable of binding to BCMA and/or TACI.
  • the ability of a given antigen-binding molecule/domain/polypeptide/amino acid sequence to bind to BCMA and/or TACI can be determined by analysis according to methods known in the art, such as by ELISA, Surface Plasmon Resonance (SPR; see e.g. Hearty et al., Methods Mol Biol (2012) 907:411-442), Bio-Layer Interferometry (see e.g. Lad et al., (2015) J Biomol Screen 20(4): 498-507), flow cytometry, or by a radiolabeled antigen-binding assay (RIA) enzyme-linked immunosorbent assay.
  • ELISA Surface Plasmon Resonance
  • SPR Surface Plasmon Resonance
  • Bio-Layer Interferometry see e.g. Lad et al., (2015) J Biomol Screen 20(4): 498-507
  • flow cytometry or by a radiolabeled antigen-binding assay (RIA) enzyme-linked immunosorbent as
  • an antigen-binding molecule/domain/polypeptide/amino acid sequence capable of binding to BCMA and/or TACI binds to BCMA and/or TACI with greater affinity, and/or with greater duration than it binds to a protein other than BCMA and/or TACI.
  • the amino acid sequence which is capable of binding to BCMA and/or TACI is derived from the amino acid sequence of a ligand for BCMA and/or TACI.
  • the amino acid sequence which is capable of binding to BCMA and/or TACI is derived from the BCMA- and/or TACI-binding region of a ligand for BCMA and/or TACI.
  • a BCMA- or TACI-binding amino acid sequence comprises or consists of a BCMA- or TACI-binding amino acid sequence derived from a ligand for BCMA and/or TACI (e.g. APRIL or BAFF).
  • amino acid sequence which is capable of binding to BCMA and/or TACI is derived from the amino acid sequence of APRIL. In some embodiments, amino acid sequence which is capable of binding to BCMA and/or TACI is derived from the amino acid sequence of BAFF.
  • an amino acid sequence which is‘derived from’ a reference amino acid sequence comprises an amino acid sequence having at least 60%, e.g. one of at least 65%, 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% sequence identity to the reference amino acid sequence.
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
  • amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI may further comprise one or more modifications (e.g.
  • substitutions/insertions/deletions to the amino acid sequence may provide the amino acid sequence with desired functional and/or structural properties.
  • the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to increase binding to BCMA as compared to the binding displayed by the corresponding unmodified amino acid sequence. In some embodiments the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to increase binding to TACI as compared to the binding displayed by the corresponding unmodified amino acid sequence.
  • the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to decrease the level of BCMA-mediated signalling by a BCMA-expressing cell following binding of an antigen-binding molecule comprising the amino acid sequence as compared to the level of BCMA-mediated signalling by a BCMA-expressing cell following binding of an antigen-binding molecule comprising the corresponding unmodified amino acid sequence.
  • the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to decrease the level of TACI-mediated signalling by a TACI-expressing cell following binding of an antigen-binding molecule comprising the amino acid sequence as compared to the level of TACI-mediated signalling by a TACI-expressing cell following binding of an antigen-binding molecule comprising the corresponding unmodified amino acid sequence.
  • the amino acid sequence derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to decrease oligomerisation of the antigen-binding polypeptide with itself (i.e. homooligomerisation), or with naturally occurring or non-naturally occurring antigen-binding polypeptide(s) comprising the unmodified amino acid sequence (heterooligomerisation).
  • BCMA-mediated signalling can be analysed using BCMA-expressing cells e.g. in an assay for detecting and/or quantifying BCMA-mediated signalling.
  • TACI-mediated signalling can be analysed using TACI-expressing cells e.g. in an assay for detecting and/or quantifying TACI-mediated signalling.
  • Suitable assays include e.g. NFKB reporter assays, and assays for detecting the
  • the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to decrease BCMA oligomerisation following binding of an antigen-binding molecule comprising the amino acid sequence as compared to the level of BCMA oligomerisation following binding of an antigen-binding molecule comprising the corresponding unmodified amino acid sequence.
  • the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to decrease TACI oligomerisation following binding of an antigen-binding molecule comprising the amino acid sequence as compared to the level of TACI oligomerisation following binding of an antigen-binding molecule comprising the corresponding unmodified amino acid sequence.
  • the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification corresponding to one or more of the following modifications: D>A at the position corresponding to position 20 of SEQ ID NO:231 , insertion of‘GGS’ between the positions corresponding to positions 62 and 63 of SEQ ID NO:231 , M>A at the position corresponding to position 90 of SEQ ID NO:231 , R>A at the position corresponding to position 121 of SEQ ID NO:231.
  • the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification corresponding to one or more of the following modifications: R>A at the position corresponding to position 34 of SEQ ID NO:231 , Y>A at the position corresponding to position 56 of SEQ ID NO:231 , S>A at the position corresponding to position 103 of SEQ ID NO:231 , H>A at the position corresponding to position 108 of SEQ ID NO:231 , F>A at the position corresponding to position 134 of SEQ ID NO:231.
  • amino acid sequence is described as comprising modification(s)“corresponding to” reference modification(s)
  • equivalent modification(s) in homologous amino acid sequences are contemplated. That is, the modification(s) identified in the preceding paragraphs are contemplated in amino acid sequences having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
  • Corresponding positions to those identified in the reference sequence i.e. SEQ ID NO:231
  • sequence alignment software such as ClustalOmega (Soding, J. 2005, Bioinformatics 21 , 951-960).
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising one or more (e.g. 2, 3, 4, 5, 6, 7, 8, 9 or 10) substitutions/insertions relative to the amino acid sequence of SEQ ID NO:231.
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution D>A at the position corresponding to position 20 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising insertion of‘GGS’ between the positions corresponding to positions 62 and 63 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution M>A at the position corresponding to position 90 of SEQ ID NO:231.
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution R>A at the position corresponding to position 121 of SEQ ID NO:231.
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution D>A at the position corresponding to position 20 of SEQ ID NO:231 , and further comprising insertion of‘GGS’ between the positions corresponding to positions 62 and 63 of SEQ ID NO:231 , further comprising the substitution M>A at the position corresponding to position 90 of SEQ ID NO:231 , and further comprising the substitution R>A at the position corresponding to position 121 of SEQ ID NO:231 (that is, the amino acid sequence shown in SEQ ID NO:232).
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution R>A at the position corresponding to position 34 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution Y>A at the position corresponding to position 56 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution S>A at the position corresponding to position 103 of SEQ ID NO:231.
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution H>A at the position corresponding to position 108 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution F>A at the position corresponding to position 134 of SEQ ID NO:231.
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution R>A at the position corresponding to position 34 of SEQ ID NO:231 , further comprising the substitution Y>A at the position corresponding to position 56 of SEQ ID NO:231 , further comprising the substitution S>A at the position corresponding to position 103 of SEQ ID NO:231 , further comprising the substitution H>A at the position corresponding to position 108 of SEQ ID NO:231 , and further comprising the substitution F>A at the position corresponding to position 134 of SEQ ID NO:231 (that is, the amino acid sequence shown in SEQ ID NO:233).
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:232, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:232.
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:233, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:233.
  • the antigen-binding molecule comprises more than one an amino acid sequence which is capable of binding to BCMA and/or TACI. In some embodiments the antigen-binding molecule comprises one of 1 , 2, 3, 4, 5, 6, 7 or 8 non-overlapping amino acid sequences, which are each independently capable of binding to BCMA and/or TACI. In some embodiments antigen-binding molecule comprises a polypeptide comprising plural amino acid sequences capable of binding to BCMA and/or TACI provided in tandem.
  • the antigen-binding molecule comprises a polypeptide comprising non-overlapping sequences according to (i) and (ii):
  • amino acid sequence according to SEQ ID NO:232, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:232, and
  • amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
  • the antigen-binding molecule comprises a polypeptide comprising non-overlapping sequences according to (i) to (iii):
  • amino acid sequence (i) an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
  • amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
  • the antigen-binding molecule comprises a polypeptide comprising non-overlapping sequences according to (i) to (iii):
  • amino acid sequence according to SEQ ID NO:232, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:232.
  • amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
  • amino acid sequence (iii) an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
  • the antigen-binding molecule comprises a polypeptide comprising non-overlapping sequences according to (i) to (iii):
  • amino acid sequence according to SEQ ID NO:232, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:232.
  • amino acid sequence according to SEQ ID NO:232, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:232.
  • amino acid sequence (iii) an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
  • linker sequences e.g. linker sequences as described herein.
  • a linker sequence comprises or consists of glycine and serine residues.
  • a linker sequence comprises 1 to 20 amino acids.
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:234, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:234.
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:235, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:235.
  • the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:236, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:236.
  • the antigen-binding molecule is not a naturally-occurring peptide/polypeptide.
  • the antigen-binding molecule does not consist of the amino acid sequence shown in one of SEQ ID NOs: 153 to 173.
  • the antigen-binding molecule is capable of binding to CD47 and is capable of binding to BCMA. In aspects of the present invention, the antigen-binding molecule is capable of binding to CD47 and is capable of binding to TACI. In aspects of the present invention, the antigenbinding molecule is capable of binding to CD47 and is capable of binding to BCMA and TACI.
  • the antigen-binding molecule comprises the CDRs of an antigen-binding molecule which is capable of binding to CD47 and the CDRs of an antigen-binding molecule which is capable of binding to BCMA and/or TACI. In some embodiments, the antigen-binding molecule comprises the FRs of an antigen-binding molecule which is capable of binding to CD47 and the FRs of an antigen-binding molecule which is capable of binding to BCMA and/or TACI.
  • the antigen-binding molecule comprises the CDRs and the FRs of an antigen-binding molecule which is capable of binding to CD47 and the CDRs and the FRs of an antigen-binding molecule which is capable of binding to BCMA and/or TACI. That is, in some embodiments the antigen-binding molecule comprises the VH region and the VL region of an antigen-binding molecule which is capable of binding to CD47 and the VH region and the VL region of an antigen-binding molecule which is capable of binding to BCMA and/or TACI.
  • the antigen-binding molecule comprises a VH region and a VL region which is, or which is derived from, the VH/VL region of a CD47-binding antibody clone described herein (i.e. anti- CD47 antibody clones 1-1-A1_BM, 1-1-A1 , 5-48-A6, 5-48-D2, 1 1A1 H1 , 1 1A1 H2, 1 1A1 H3, 1 1A1 H4, 1 1A1 H5, 1 1A1 H6, 1 1A1 H7, 1 1A1 H8, 1 1A1 H9, 1 1A1 H10 or 1 1 A1 H1 1 ) and a VH region and a VL region which is, or which is derived from, the VH/VL region of a BCMA and/or TACI-binding antibody clone described herein (i.e. anti-BCMA antibody clone J6M0).
  • a CD47-binding antibody clone described herein i
  • a CD47-binding region comprising a VH region according to any one of (1 ) to (35) above, and a VL region according to any one of (36) to (70) above;
  • BCMA-binding region comprising a VH region according to any one of (71 ) to (74) above, and a VL region according to any one of (75) to (78) above.
  • a CD47-binding region comprising a VH region according to any one of (1 ) to (35) above, and a VL region according to any one of (36) to (70) above;
  • BCMA- and/or TACI-binding region comprising or consisting of (i) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of one of SEQ ID NOs:231 , 232, 233, 234, 235 or 236.
  • substitutions may conservative substitutions, for example according to the following Table.
  • amino acids in the same block in the middle column are substituted.
  • amino acids in the same line in the rightmost column are substituted:
  • substitution(s) may be functionally conservative. That is, in some embodiments the substitution may not affect (or may not substantially affect) one or more functional properties (e.g. target binding) of the antigen-binding molecule comprising the substitution as compared to the equivalent unsubstituted molecule.
  • the VH and VL region of an antigen-binding region of an antibody together constitute the Fv region.
  • the antigen-binding molecule according to the present invention comprises, or consists of, an Fv region which binds to CD47.
  • the antigen-binding molecule comprises an Fv region which binds to BCMA and/or TACI.
  • the antigen-binding molecule according to the present invention comprises, or consists of, an Fv region which binds to CD47 and an Fv region which binds to BCMA and/or TACI.
  • the VH and VL regions of the Fv are provided as single polypeptide joined by a linker region, i.e. a single chain Fv (scFv).
  • the antigen-binding molecule of the present invention comprises one or more regions of an immunoglobulin heavy chain constant sequence.
  • the immunoglobulin heavy chain constant sequence is, or is derived from, the heavy chain constant sequence of an IgG (e.g. lgG1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, IgE or IgM.
  • the immunoglobulin heavy chain constant sequence is human immunoglobulin G 1 constant (IGHG1 ; UniProt: P01857-1 , v1 ; SEQ ID NO:146). Positions 1 to 98 of SEQ ID NO:146 form the CH1 region (SEQ ID NO:147). Positions 99 to 110 of SEQ ID NO:146 form a hinge region between CH1 and CH2 regions (SEQ ID NO:148). Positions 111 to 223 of SEQ ID NO:146 form the CH2 region (SEQ ID NO:149). Positions 224 to 330 of SEQ ID NO:146 form the CH3 region (SEQ ID NO:150).
  • the exemplified antigen-binding molecules were prepared using pFUSE-CHIg-hG1 , which comprises the substitutions D356E, L358M (positions numbered according to EU numbering) in the CH3 region relative to SEQ ID NO:146.
  • the amino acid sequence of the CH3 region encoded by pFUSE-CHIg-hG1 is shown in SEQ ID NO: 151. It will be appreciated that CH3 regions may be provided with further substitutions in accordance with modification to an Fc region of the antigen-binding molecule as described herein.
  • a CH1 region comprises or consists of the sequence of SEQ ID NO:147, or a sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%,
  • a CH1-CH2 hinge region comprises or consists of the sequence of SEQ ID NO:148, or a sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:148.
  • a CH2 region comprises or consists of the sequence of SEQ ID NO:149, or a sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:149.
  • a CH3 region comprises or consists of the sequence of SEQ ID NO: 150 or 151 , or a sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 150 or 151.
  • the antigen-binding molecule comprises a sequence comprising a hinge region comprising the substitution C220S (numbered according to EU numbering).
  • the antigen-binding molecule comprises the amino acid sequence of SEQ ID NO:268, or having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:268.
  • the antigen-binding molecule of the present invention comprises one or more regions of an immunoglobulin light chain constant sequence.
  • the immunoglobulin light chain constant sequence is human immunoglobulin kappa constant (IGKC; CK; UniProt: P01834-1 , v2; SEQ ID NO: 152).
  • the immunoglobulin light chain constant sequence is a human immunoglobulin lambda constant (IGLC; CA), e.g. IGLC1 , IGLC2, IGLC3, IGLC6 or IGLC7.
  • a CL region comprises or consists of the sequence of SEQ ID NO: 152, or a sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%,
  • the VL and light chain constant (CL) region, and the VH region and heavy chain constant 1 (CH1 ) region of an antigen-binding region of an antibody together constitute the Fab region.
  • the antigen-binding molecule comprises a Fab region comprising a VH, a CH1 , a VL and a CL (e.g. CK or CA).
  • the Fab region comprises a polypeptide comprising a VH and a CH1 (e.g. a VH-CH1 fusion polypeptide), and a polypeptide comprising a VL and a CL (e.g. a VL-CL fusion polypeptide).
  • the Fab region comprises a polypeptide comprising a VH and a CL (e.g. a VH-CL fusion polypeptide) and a polypeptide comprising a VL and a CH (e.g. a VL-CH1 fusion polypeptide); that is, in some embodiments the Fab region is a CrossFab region.
  • the VH, CH1 , VL and CL regions of the Fab or CrossFab are provided as single polypeptide joined by linker regions, i.e. as a single chain Fab (scFab) or a single chain CrossFab (scCrossFab).
  • the antigen-binding molecule of the present invention comprises, or consists of, a Fab region which binds to CD47. In some embodiments, the antigen-binding molecule comprises a Fab region which binds to BCMA and/or TACI. In some embodiments, the antigen-binding molecule of the present invention comprises, or consists of, a Fab region which binds to CD47 and a Fab region which binds to BCMA and/or TACI. In some embodiments, the antigen-binding molecule described herein comprises, or consists of, a whole antibody which binds to CD47.
  • the antigen-binding molecule comprises a whole antibody which binds to a BCMA and/or TACI.
  • the antigen-binding molecule described herein comprises, or consists of, a whole antibody which binds to CD47 and a whole antibody which binds to a BCMA and/or TACI.
  • “whole antibody” refers to an antibody having a structure which is substantially similar to the structure of an immunoglobulin (Ig). Different kinds of immunoglobulins and their structures are described e.g. in Schroeder and Cavacini J Allergy Clin Immunol. (2010) 125(202): S41-S52, which is hereby incorporated by reference in its entirety.
  • Immunoglobulins of type G are -150 kDa glycoproteins comprising two heavy chains and two light chains. From N- to C-terminus, the heavy chains comprise a VH followed by a heavy chain constant region comprising three constant domains (CH1 , CH2, and CH3), and similarly the light chain comprise a VL followed by a CL.
  • immunoglobulins may be classed as IgG (e.g. lgG1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, IgE, or IgM.
  • the light chain may be kappa (K) or lambda (l).
  • the antigen-binding molecule described herein comprises, or consists of, an IgG (e.g. lgG1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, IgE, or IgM which binds to CD47.
  • the antigen-binding molecule described herein comprises an IgG (e.g. lgG1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, IgE, or IgM which binds to BCMA and/or TACI.
  • the antigen-binding molecule comprises a ligand for BCMA and/or TACI, or a BCMA and/or TACI -binding fragment of a ligand for BCMA and/or TACI.
  • the ligand for BCMA and/or TACI is BAFF.
  • the ligand for BCMA and/or TACI is APRIL.
  • Human A proliferation-inducing ligand (APRIL; also known as TNFSF13) is the protein identified by UniProt 075888.
  • Alternative splicing of mRNA encoded by the human TNFSF13 gene yields 6 isoforms: isoform alpha (UniProt: 075888-1 , v1 ; SEQ ID NO: 153); isoform beta (UniProt: 075888-2; SEQ ID NO:154), in which the amino acid sequence corresponding to positions 113 to 129 of SEQ ID NO:153 are substituted with“N”; isoform gamma (UniProt: 075888-3; SEQ ID NO: 155), which lacks the amino acid sequence corresponding to positions 247 to 249 of SEQ ID NO: 153; isoform 4 (UniProt: 075888-4; SEQ ID NO: 156), which lacks the amino acid sequence corresponding to positions 86 to 113 of SEQ ID NO: 153; isoform TWE-PRIL (
  • APRIL is cleaved in the Golgi between positions 104-105 by a furin convertase to yield the mature, secreted form of the protein (Lopez-Fraga et al. (2001 ) EMBO Rep. 2: 945-951 ).
  • the mature forms of the alpha, beta, gamma and TWE-PRIL isoforms are shown in SEQ ID NOs:159 to 162.
  • APRIL assembles as a homotrimer which establishes contacts with monomeric BCMA and TACI receptors, resulting in receptor trimerisation and activation of the NF-kB pathway.
  • APRIL refers to APRIL from any species and includes APRIL isoforms, fragments, variants or homologues from any species.
  • the APRIL is APRIL from a mammal (e.g. a primate (rhesus, cynomolgous, or human) and/or a rodent (e.g. rat or murine) APRIL).
  • Isoforms, fragments, variants or homologues of APRIL may optionally be characterised as having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of an immature or mature APRIL isoform from a given species, e.g. human.
  • the APRIL, or the fragment of APRIL comprises or consists of an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%,
  • Human B cell activating factor (BAFF; also known as TNFSF13B and BLys) is the protein identified by UniProt Q9Y275.
  • Alternative splicing of mRNA encoded by the human TNFSF13B gene yields 3 isoforms: isoform 1 (UniProt: Q9Y275-1 , v1 ; SEQ ID NO:163); isoform 2 (UniProt: Q9Y275-2; SEQ ID NO:164), which lacks the amino acid sequence corresponding to positions 142 to 160 of SEQ ID NO:163; and isoform 3 (UniProt: Q9Y275-3; SEQ ID NO:165), in which positions 162 to 164 of SEQ ID NO:163 are replaced with“FIY”, and which lacks the amino acid sequence corresponding to positions 165 to 285 of SEQ ID NO:163.
  • BAFF comprises an N-terminal cytoplasmic domain (SEQ ID NO:166), a transmembrane domain (SEQ ID NO:167) and an extracellular domain (SEQ ID NOs: 168 to 170), which is cleaved between the positions corresponding to positions 133 and 135 to yield a soluble form (SEQ ID NOs: 171 to 173).
  • BAFF refers to BAFF from any species and includes BAFF isoforms, fragments, variants or homologues from any species.
  • the BAFF is BAFF from a mammal (e.g. a primate (rhesus, cynomolgous, or human) and/or a rodent (e.g. rat or murine) BAFF).
  • Isoforms, fragments, variants or homologues of BAFF may optionally be characterised as having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of an immature or mature BAFF isoform from a given species, e.g. human.
  • the BAFF comprises or consists of an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%,
  • BAFF and APRIL display binding to BCMA and TACI.
  • the ligand for BCMA, or BCMA-binding fragment of a ligand for BCMA is capable of binding to transmembrane activator and CAML interactor (TACI).
  • the ligand for TACI, or TACI-binding fragment of a ligand for TACI is capable of binding to BCMA.
  • Aspects of the present invention relate to multispecific antigen-binding molecules. By“multispecific” it is meant that the antigen-binding molecule displays specific binding to more than one target.
  • the antigen-binding molecule is a bispecific antigen-binding molecule.
  • the antigen-binding molecule comprises at least two different antigen-binding domains (i.e. at least two antigen-binding domains, e.g. comprising non-identical VHs and VLs).
  • the antigen-binding molecule binds to CD47 and BCMA and/or TACI, and so is at least bispecific.
  • the term“bispecific” means that the antigen-binding molecule is able to bind specifically to at least two distinct antigenic determinants.
  • the antigen-binding molecule capable of binding to BCMA is also capable of binding to TACI. In some embodiments, the antigen-binding molecule capable of binding to TACI is also capable of binding to BCMA.
  • the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA. In some embodiments the antigen-binding domain capable of binding to BCMA is also capable of binding to TACI. In some embodiments the antigen-binding molecule comprises an antigenbinding domain capable of binding to TACI. In some embodiments the antigen-binding domain capable of binding to TACI is also capable of binding to BCMA.
  • the antigen-binding molecule is cross-reactive for BCMA and TACI. In some embodiments the antigen-binding molecule comprises an antigen-binding domain which is cross-reactive for BCMA and TACI.
  • a“cross-reactive” antigen-binding molecule/domain/polypeptide is capable of binding to the target antigens for which the antigen-binding molecule/domain is cross-reactive.
  • an antigen-binding molecule/domain/polypeptide which is cross-reactive for BCMA and TACI is capable of binding to BCMA, and is also capable of binding to TACI.
  • molecules/domains/polypeptides may display specific binding to each of the target antigens.
  • the BCMA-binding region of the antigen-binding molecule/domain is capable of binding to TACI. In some embodiments the TACI-binding region of the antigen-binding molecule/domain is capable of binding to BCMA.
  • an antigen-binding molecule according to the present invention may comprise antigen-binding molecules capable of binding to the targets for which the antigen-binding molecule is specific.
  • an antigen-binding molecule which is capable of binding to CD47 and BCMA and/or TACI may comprise: (i) an antigen-binding molecule which is capable of binding to CD47, and (ii) an antigen-binding molecule which is capable of binding to BCMA and/or TACI.
  • Figure 2 of the present application provides a graphic representation of an antigen-binding molecule which is capable of binding to CD47 and BCMA, comprising (i) an antigen-binding molecule which is capable of binding to CD47, specifically a CD47-binding Fab, and (ii) an antigen-binding molecule which is capable of binding to BCMA, specifically a BCMA-binding scFv.
  • an antigen-binding molecule according to the present invention may comprise antigen-binding polypeptides or antigen-binding polypeptide complexes capable of binding to the targets for which the antigen-binding molecule is specific.
  • Figure 2 of the present application lower right provides a graphic representation of an antigen-binding molecule which is capable of binding to CD47 and BCMA, comprising (i) an antigenbinding polypeptide complex capable of binding to CD47, comprising a light chain polypeptide
  • a component antigen-binding molecule of a larger antigen-binding molecule may be referred to e.g. as an“antigen-binding domain” or “antigen-binding region” of the larger antigen-binding molecule.
  • the antigen-binding molecule comprises an antigen-binding molecule capable of binding to CD47, and an antigen-binding molecule capable of binding to an antigen other than CD47.
  • the antigen other than CD47 is an immune cell surface molecule.
  • the antigen other than CD47 is a cancer cell antigen.
  • the antigen other than CD47 is a receptor molecule, e.g. a cell surface receptor.
  • the antigen other than CD47 is a cell signalling molecule, e.g. a cytokine, chemokine, interferon, interleukin or lymphokine.
  • the antigen other than CD47 is a growth factor or a hormone.
  • a cancer cell antigen is an antigen which is expressed or over-expressed by a cancer cell.
  • a cancer cell antigen may be any peptide/polypeptide, glycoprotein, lipoprotein, glycan, glycolipid, lipid, or fragment thereof.
  • a cancer cell antigen’s expression may be associated with a cancer.
  • a cancer cell antigen may be abnormally expressed by a cancer cell (e.g. the cancer cell antigen may be expressed with abnormal localisation), or may be expressed with an abnormal structure by a cancer cell.
  • a cancer cell antigen may be capable of eliciting an immune response.
  • the antigen is expressed at the cell surface of the cancer cell (i.e. the cancer cell antigen is a cancer cell surface antigen).
  • the part of the antigen which is bound by the antigen-binding molecule described herein is displayed on the external surface of the cancer cell (i.e. is extracellular).
  • the cancer cell antigen may be a cancer-associated antigen.
  • the cancer cell antigen is an antigen whose expression is associated with the development, progression or severity of symptoms of a cancer.
  • the cancer- associated antigen may be associated with the cause or pathology of the cancer, or may be expressed abnormally as a consequence of the cancer.
  • the cancer cell antigen is an antigen whose expression is upregulated (e.g. at the RNA and/or protein level) by cells of a cancer, e.g.
  • the cancer-associated antigen may be preferentially expressed by cancerous cells, and not expressed by comparable non-cancerous cells (e.g. non-cancerous cells derived from the same tissue/cell type).
  • the cancer- associated antigen may be the product of a mutated oncogene or mutated tumor suppressor gene.
  • the cancer-associated antigen may be the product of an overexpressed cellular protein, a cancer antigen produced by an oncogenic virus, an oncofetal antigen, or a cell surface glycolipid or glycoprotein.
  • An immune cell surface molecule may be any peptide/polypeptide, glycoprotein, lipoprotein, glycan, glycolipid, lipid, or fragment thereof expressed at or on the cell surface of an immune cell.
  • the part of the immune cell surface molecule which is bound by the antigen-binding molecule of the present invention is on the external surface of the immune cell (i.e. is extracellular).
  • the immune cell surface molecule may be expressed at the cell surface of any immune cell.
  • the immune cell may be a cell of hematopoietic origin, e.g. a neutrophil, eosinophil, basophil, dendritic cell, lymphocyte, or monocyte.
  • the lymphocyte may be e.g. a T cell, B cell, natural killer (NK) cell, NKT cell or innate lymphoid cell (ILC), or a precursor thereof (e.g. a thymocyte or pre-B cell).
  • the antigen other than CD47 is an antigen expressed by cells of a hematologic malignancy, a myeloid hematologic malignancy, a lymphoblastic hematologic malignancy,
  • MDS myelodysplastic syndrome
  • AML acute myeloid leukemia
  • ALL acute lymphoblastic leukemia
  • NHL non-Hodgkin’s lymphoma
  • multiple myeloma bladder cancer or brain cancer.
  • the antigen other than CD47 is an antigen expressed by cells of AML, e.g. as described in Hoseini and Cheung Blood Cancer J. (2017) 7(2):e522, which is hereby incorporated by reference in its entirety.
  • the antigen other than CD47 is selected from: BCMA, TACI, CD33, CD123, Wilms' tumor protein (WT1 ), CD13, CD15, CD30, CD45, C-type lectin-like molecule 1 (CLL1 ), Fms-like tyrosine kinase 3 (FLT-3), VEGF and angiopoietin-2 (Ang-2).
  • the antigen other than CD47 is BCMA.
  • the antigen other than CD47 is TACI.
  • Multispecific antigen-binding molecules described herein display at least monovalent binding with respect to CD47, and also display at least monovalent binding with respect to the antigen other than CD47.
  • a multispecific antigen-binding molecule according to the present invention displays at least monovalent binding with respect to CD47, and also displays at least monovalent binding with respect to BCMA and/or TACI.
  • the antigen-binding molecule comprises an antigen-binding region (e.g. a polypeptide, Fv, Fab or antibody) capable of binding to CD47, and an antigen-binding region (e.g. a polypeptide, Fv, Fab or antibody) capable of binding to BCMA and/or TACI.
  • the antigen-binding molecule comprises the VH and VL of an antibody capable of binding to CD47, and the VH and VL of an antibody capable of binding to BCMA and/or TACI.
  • Binding valency refers to the number of binding sites in an antigen-binding molecule for a given antigenic determinant.
  • the bispecific anti-CD47/anti-BCMA antibody described herein (e.g. [6] of Example 2.2) is monovalent with respect to binding to CD47, and monovalent with respect to binding to BCMA.
  • the antigen-binding molecule comprises one binding site for CD47, and one binding site for BCMA and/or TACI.
  • Multispecific antigen-binding molecules according to the invention may be provided in any suitable format, such as those formats described in described in Brinkmann and Kontermann MAbs (2017) 9(2): 182-212, which is hereby incorporated by reference in its entirety.
  • Suitable formats include those shown in Figure 2 of Brinkmann and Kontermann MAbs (2017) 9(2): 182-212: antibody conjugates, e.g. lgG2, F(ab’)2 or CovX-Body; IgG or IgG-like molecules, e.g. IgG, chimeric IgG, kl-body common HC; CH1/CL fusion proteins, e.g.
  • scFv2-CH1/CL, VHH2-CH1/CL;‘variable domain only’ bispecific antigen-binding molecules e.g. tandem scFv (taFV), triplebodies, diabodies (Db), dsDb, Db(kih), DART, scDB, dsFv-dsFv, tandAbs, triple heads, tandem dAb/VHH, tertravalent dAb.VHH;
  • Non-lg fusion proteins e.g.
  • scFv2-albumin scDb- albumin, taFv-albumin, taFv-toxin, miniantibody, DNL-Fab2, DNL-Fab2-scFv, DNL-Fab2-lgG-cytokine2, ImmTAC (TCR-scFv); modified Fc and CH3 fusion proteins, e.g.
  • Fab-scFv (bibody), Fab-scFv2 (tribody), Fab-Fv, Fab-dsFv, Fab-VHH, orthogonal Fab-Fab; non-lg fusion proteins, e.g. DNL-Fab3, DNL-Fab2-scFv, DNL- Fab2-lgG-cytokine2; asymmetric IgG or IgG-like molecules, e.g.
  • IgGs appended and Fc-modified IgGs, e.g. lgG(kih)-Fv, IgG HA-TF-Fv, lgG(kih)scFab, scFab-Fc(kih)-scFv2, scFab-Fc(kih)-scFv, half DVD-lg, DVI-lg (four-in-one), CrossMab-Fab; modified Fc and CH3 fusion proteins, e.g.
  • modified IgGs e.g. DAF (two-in one-lgG), DutaMab, Mab 2 ; and non-lg fusions, e.g. DNL-Fab 4 -lgG.
  • bispecific antigen-binding molecules The skilled person is able to design and prepare bispecific antigen-binding molecules.
  • Methods for producing bispecific antigen-binding molecules include chemically crosslinking of antigen-binding molecules or antibody fragments, e.g. with reducible disulphide or non-reducible thioether bonds, for example as described in Segal and Bast, 2001. Production of Bispecific Antigen-binding molecules. Current Protocols in Immunology. 14:IV:2.13:2.13.1—2.13.16, which is hereby incorporated by reference in its entirety.
  • A/-succinimidyl-3-(-2-pyridyldithio)-propionate (SPDP) can be used to chemically crosslink e.g. Fab fragments via hinge region SH- groups, to create disulfide-linked bispecific F(ab)2 heterodimers.
  • bispecific antigen-binding molecules include fusing antibody-producing hybridomas e.g. with polyethylene glycol, to produce a quadroma cell capable of secreting bispecific antibody, for example as described in D. M. and Bast, B. J. 2001. Production of Bispecific Antigen-binding molecules. Current Protocols in Immunology. 14: IV:2.13:2.13.1—2.13.16.
  • Bispecific antigen-binding molecules according to the present invention can also be produced recombinantly, by expression from e.g. a nucleic acid construct encoding polypeptides for the antigenbinding molecules, for example as described in Antibody Engineering: Methods and Protocols, Second Edition (Humana Press, 2012), at Chapter 40: Production of Bispecific Antigen-binding molecules:
  • a DNA construct encoding the light and heavy chain variable domains for the two antigenbinding fragments i.e. the light and heavy chain variable domains for the antigen-binding fragment capable of binding CD47, BCMA and/or TACI, and the light and heavy chain variable domains for the antigen-binding fragment capable of binding to another target protein
  • sequences encoding a suitable linker or dimerization domain between the antigen-binding fragments can be prepared by molecular cloning techniques.
  • Recombinant bispecific antibody can thereafter be produced by expression (e.g. in vitro) of the construct in a suitable host cell (e.g. a mammalian host cell), and expressed recombinant bispecific antibody can then optionally be purified.
  • the antigen-binding molecules of the present invention comprise an Fc region.
  • An Fc region is composed of CH2 and CH3 regions from one polypeptide, and CH2 and CH3 regions from another polypeptide. The CH2 and CH3 regions from the two polypeptides together form the Fc region.
  • the antigen-binding molecule of the present invention comprises an Fc region comprising modification in one or more of the CH2 and CH3 regions promoting association of the Fc region.
  • Recombinant co-expression of constituent polypeptides of an antigen-binding molecule and subsequent association leads to several possible combinations.
  • modification(s) promoting association of the desired combination of heavy chain polypeptides.
  • Modifications may promote e.g. hydrophobic and/or electrostatic interaction between CH2 and/or CH3 regions of different polypeptide chains. Suitable modifications are described e.g. in Ha et al., Front. Immnol (2016) 7:394, which is hereby incorporated by reference in its entirety.
  • the antigen antigen-binding molecule of the present invention comprises an Fc region comprising paired substitutions in the CH3 regions of the Fc region according to one of the following formats, as shown in Table 1 of Ha et al., Front. Immnol (2016) 7:394: KiH, KiH s-s , HA-TF, ZW1 , 7.8.60, DD-KK, EW-RVT, EW-RVTs-s, SEED or A107.
  • the Fc region comprises the“knob-into-hole” or“KiH” modification, e.g. as described e.g. in US 7,695,936 and Carter, J Immunol Meth 248, 7-15 (2001 ).
  • one of the CH3 regions of the Fc region comprises a“knob” modification
  • the other CH3 region comprises a“hole” modification.
  • The“knob” and“hole” modifications are positioned within the respective CH3 regions so that the“knob” can be positioned in the“hole” in order to promote heterodimerisation (and inhibit homodimerisation) of the polypeptides and/or stabilise heterodimers.
  • Knobs are constructed by substituting amino acids having small chains with those having larger side chains (e.g. tyrosine or tryptophan). Holes are created by substituting amino acids having large side chains with those having smaller side chains (e.g. alanine or threonine).
  • one of the CH3 regions of the Fc region of the antigen-binding molecule of the present invention comprises the substitution (numbering of positions/substitutions in the Fc, CH2 and CH3 regions herein is according to the EU numbering system as described in Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, MD, 1991 ) T366W, and the other CH3 region of the Fc region comprises the substitution Y407V.
  • one of the CH3 regions of the Fc region of the antigen-binding molecule comprises the substitution T366W, and the other CH3 region of the Fc region comprises the substitutions T366S and L368A. In some embodiments, one of the CH3 regions of the Fc region of the antigen-binding molecule comprises the substitution T366W, and the other CH3 region of the Fc region comprises the substitutions Y407V, T366S and L368A.
  • the Fc region comprises the“DD-KK” modification as described e.g. in WO 2014/131694 A1.
  • one of the CH3 regions comprises the substitutions K392D and K409D, and the other CH3 region of the Fc region comprises the substitutions E356K and D399K. The modifications promote electrostatic interaction between the CH3 regions.
  • the antigen-binding molecule of the present invention comprises an Fc region modified as described in Labrijn et al., Proc Natl Acad Sci U S A. (2013) 1 10(13):5145-50, referred to as ‘Duobody’ format.
  • one of the CH3 regions comprises the substitution K409R
  • the other CH3 region of the Fc region comprises the substitution F405L.
  • the antigen-binding molecule of the present invention comprises an Fc region comprising the“EEE-RRR” modification as described in Strop et al., J Mol Biol. (2012) 420(3):204-19.
  • one of the CH3 regions comprises the substitutions D221 E, P228E and L368E
  • the other CH3 region of the Fc region comprises the substitutions D221 R, P228R and K409R.
  • the antigen-binding molecule comprises an Fc region comprising the“EW-RVT” modification described in Choi et al., Mol Cancer Ther (2013) 12(12):2748-59.
  • one of the CH3 regions comprises the substitutions K360E and K409W
  • the other CH3 region of the Fc region comprises the substitutions Q347R, D399V and F405T.
  • one of the CH3 regions comprises the substitution S354C
  • the other CH3 region of the Fc region comprises the substitution Y349C.
  • Introduction of these cysteine residues results in formation of a disulphide bridge between the two CH3 regions of the Fc region, further stabilizing the heterodimer (Carter (2001 ), J Immunol Methods 248, 7-15).
  • the Fc region comprises the“KiHs-s” modification.
  • one of the CH3 regions comprises the substitutions T366W and S354C, and the other CH3 region of the Fc region comprises the substitutions T366S, L368A, Y407V and Y349C.
  • the antigen-binding molecule of the present invention comprises an Fc region comprising the“SEED” modification as described in Davis et al., Protein Eng Des Sel (2010) 23(4): 195- 202, in which b-strand segments of human lgG1 CH3 and IgA CH3 are exchanged.
  • one of the CH3 regions comprises the substitutions S364H and F405A
  • the other CH3 region of the Fc region comprises the substitutions Y349T and T394F (see e.g. Moore et al., MAbs (201 1 ) 3(6):546-57).
  • one of the CH3 regions comprises the substitutions T350V, L351 Y, F405A and Y407V
  • the other CH3 region of the Fc region comprises the substitutions T350V, T366L, K392L and T394W (see e.g. Von Kreudenstein et al., MAbs (2013) 5(5):646-54).
  • one of the CH3 regions comprises the substitutions K360D, D399M and Y407A
  • the other CH3 region of the Fc region comprises the substitutions E345R, Q347R, T366V and K409V (see e.g. Leaver-Fay et al., Structure (2016) 24(4):641-51 ).
  • one of the CH3 regions comprises the substitutions K370E and K409W
  • the other CH3 region of the Fc region comprises the substitutions E357N, D399V and F405T (see e.g. Choi et al., PLoS One (2015) 10(12):e0145349).
  • the present invention also provides polypeptide constituents of antigen-binding molecules.
  • the polypeptides may be provided in isolated or substantially purified form.
  • the antigen-binding molecule of the present invention may be, or may comprise, a complex of polypeptides.
  • a polypeptide comprises more than one domain or region
  • the plural domains/regions are preferably present in the same polypeptide chain. That is, the polypeptide comprising more than one domain or region is a fusion polypeptide comprising the domains/regions.
  • a polypeptide according to the present invention comprises, or consists of, a VH as described herein. In some embodiments a polypeptide according to the present invention comprises, or consists of, a VL as described herein.
  • the polypeptide additionally comprises one or more antibody heavy chain constant regions (CH). In some embodiments, the polypeptide additionally comprises one or more antibody light chain constant regions (CL). In some embodiments, the polypeptide comprises a CH1 , CH2 region and/or a CH3 region of an immunoglobulin (Ig).
  • CH antibody heavy chain constant regions
  • CL antibody light chain constant regions
  • the polypeptide comprises a CH1 , CH2 region and/or a CH3 region of an immunoglobulin (Ig).
  • the polypeptide comprises one or more regions of an immunoglobulin heavy chain constant sequence. In some embodiments the polypeptide comprises a CH1 region as described herein. In some embodiments the polypeptide comprises a CH1-CH2 hinge region as described herein. In some embodiments the polypeptide comprises a CH2 region as described herein. In some embodiments the polypeptide comprises a CH3 region as described herein.
  • the polypeptide comprises a CH3 region comprising any one of the following amino acid substitutions/combinations of amino acid substitutions (shown e.g. in Table 1 of Ha et al., Front. Immnol (2016) 7:394, incorporated by reference hereinabove): T366W; T366S, L368A and Y407V; T366W and S354C; T366S, L368A, Y407V and Y349C; S364H and F405A; Y349T and T394F; T350V, L351Y, F405A and Y407V; T350V, T366L, K392L and T394W; K360D, D399M and Y407A; E345R, Q347R, T366V and K409V; K409D and K392D; D399K and E356K; K360E and K409W; Q347
  • the CH2 and/or CH3 regions of the polypeptide comprise one or more amino acid substitutions for promoting association of the polypeptide with another polypeptide comprising a CH2 and/or CH3 region.
  • polypeptide comprises one or more regions of an immunoglobulin light chain constant sequence. In some embodiments the polypeptide comprises a CL region as described herein.
  • the polypeptide according to the present invention comprises a structure from N- to C-terminus according to one of the following: (i) VH
  • antigen-binding molecules composed of the polypeptides of the present invention.
  • the antigen-binding molecule of the present invention comprises one of the following combinations of polypeptides:
  • the antigen-binding molecule comprises more than one of a polypeptide of the combinations shown in (A) to (I) above.
  • the antigen-binding molecule comprises two polypeptides comprising the structure VH- CH 1-CH2-CH3, and two polypeptides comprising the structure VL-CL.
  • the antigen-binding molecule of the present invention comprises one of the following combinations of polypeptides:
  • V VH(anti-CD47)-CH 1 -CH2-CH3 + VL(anti-CD47)-CL + VH(anti-BCMA)-CH1-CH2-CH3 + VL(anti-BCMA)-CL
  • VH(anti-CD47) refers to the VH of an antigen-binding molecule capable of binding to CD47 as described herein, e.g. as defined in one of (1 ) to (35);“VL(anti-CD47)” refers to the VL of an antigenbinding molecule capable of binding to CD47 as described herein, e.g. as defined in one of (36) to (70); “VH(anti-BCMA)” refers to the VH of an antigen-binding molecule capable of binding to BCMA as described herein, e.g.
  • VL(anti-BCMA) refers to the VL of an antigen-binding molecule capable of binding to BCMA as described herein, e.g. as defined in one of (75) to (78).
  • the antigen-binding molecule of the present invention comprises one of the following combinations of polypeptides:
  • VH(anti-CD47) refers to the VH of an antigen-binding molecule capable of binding to CD47 as described herein, e.g. as defined in one of (1 ) to (35);“VL(anti-CD47)” refers to the VL of an antigenbinding molecule capable of binding to CD47 as described herein, e.g. as defined in one of (36) to (70); and“BCMA/TACI-binding polypeptide” refers to a polypeptide comprising, or consisting of, an amino acid sequence capable of binding to BCMA and/or TACI, e.g. as described herein.
  • the polypeptide comprises or consists of an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of one of SEQ ID NOs:23, 31 , 39, 44, 49, 57, 65, 73, 229, 230, 178, 179, 180, 181 , 182, 183, 184, 185, 186 or 187.
  • the polypeptide comprises or consists of an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of one of SEQ ID NOs:231 , 232, 233, 234, 235 or 236.
  • the polypeptide comprises or consists of an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of one of SEQ ID NOs: 130, 131 , 132, 133, 134, 135, 136, 137, 141 , 142, 176, 177, 210, 21 1 , 212, 213, 214, 215, 216, 217, 218, 219 or 259.
  • the polypeptide comprises or consists of an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of one of SEQ ID NOs:243, 244, 245, 246, 247, 248, 249, 250, 251 , 252, 253, 254, 255, 256, 257 or 258.
  • the antigen-binding molecules and polypeptides of the present invention comprise a hinge region.
  • a hinge region is provided between a CH 1 region and a CH2 region.
  • a hinge region is provided between a CL region and a CH2 region.
  • the hinge region comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 148.
  • the antigen-binding molecules and polypeptides of the present invention comprise one or more linker sequences between amino acid sequences.
  • a linker sequence may be provided at one or both ends of one or more of a VH, VL, CH1-CH2 hinge region, CH2 region and a CH3 region of the antigen-binding molecule/polypeptide.
  • Linker sequences are known to the skilled person, and are described, for example in Chen et al., Adv Drug Deliv Rev (2013) 65(10): 1357-1369, which is hereby incorporated by reference in its entirety.
  • a linker sequence may be a flexible linker sequence.
  • Flexible linker sequences allow for relative movement of the amino acid sequences which are linked by the linker sequence.
  • Flexible linkers are known to the skilled person, and several are identified in Chen et al., Adv Drug Deliv Rev (2013) 65(10): 1357-1369. Flexible linker sequences often comprise high proportions of glycine and/or serine residues.
  • the linker sequence comprises at least one glycine residue and/or at least one serine residue. In some embodiments the linker sequence consists of glycine and serine residues. In some embodiments, the linker sequence has a length of 1-2, 1-3, 1-4, 1-5, 1-10, 1-15, 1-20, 1-25, or 1-30 amino acids.
  • the antigen-binding molecules and polypeptides of the present invention may additionally comprise further amino acids or sequences of amino acids.
  • the antigen-binding molecules and polypeptides may comprise amino acid sequence(s) to facilitate expression, folding, trafficking, processing, purification or detection of the antigen-binding molecule/polypeptide.
  • the antigen-binding molecule/polypeptide may comprise a sequence encoding a His, (e.g. 6XHis), Myc, GST, MBP, FLAG, HA, E, or Biotin tag, optionally at the N- or C- terminus of the antigen-binding
  • the antigen-binding molecule/polypeptide comprises a detectable moiety, e.g. a fluorescent, lunminescent, immuno-detectable, radio, chemical, nucleic acid or enzymatic label.
  • a detectable moiety e.g. a fluorescent, lunminescent, immuno-detectable, radio, chemical, nucleic acid or enzymatic label.
  • the antigen-binding molecules and polypeptides of the present invention may additionally comprise a signal peptide (also known as a leader sequence or signal sequence).
  • Signal peptides normally consist of a sequence of 5-30 hydrophobic amino acids, which form a single alpha helix. Secreted proteins and proteins expressed at the cell surface often comprise signal peptides.
  • the signal peptide may be present at the N-terminus of the antigen-binding molecule/polypeptide, and may be present in the newly synthesised antigen-binding molecule/polypeptide.
  • the signal peptide provides for efficient trafficking and secretion of the antigen-binding molecule/polypeptide. Signal peptides are often removed by cleavage, and thus are not comprised in the mature antigen-binding
  • Signal peptides are known for many proteins, and are recorded in databases such as GenBank, UniProt, Swiss-Prot, TrEMBL, Protein Information Resource, Protein Data Bank, Ensembl, and InterPro, and/or can be identified/predicted e.g. using amino acid sequence analysis tools such as SignalP (Petersen et al., 201 1 Nature Methods 8: 785-786) or Signal-BLAST (Frank and Sippl, 2008 Bioinformatics 24: 2172- 2176).
  • SignalP Protein et al., 201 1 Nature Methods 8: 785-786
  • Signal-BLAST Frank and Sippl, 2008 Bioinformatics 24: 2172- 2176.
  • the signal peptide of the antigen-binding molecule/polypeptide of the present invention comprises, or consists of, an amino acid sequence having at least 80%, 85% 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% sequence identity to the amino acid sequence of one of SEQ ID NOs:81 to 86.
  • the antigen-binding molecules of the present invention additionally comprise a detectable moiety.
  • the antigen-binding molecule comprises a detectable moiety, e.g. a fluorescent label, phosphorescent label, luminescent label, immuno-detectable label (e.g. an epitope tag), radiolabel, chemical, nucleic acid or enzymatic label.
  • a detectable moiety e.g. a fluorescent label, phosphorescent label, luminescent label, immuno-detectable label (e.g. an epitope tag), radiolabel, chemical, nucleic acid or enzymatic label.
  • the antigen-binding molecule may be covalently or non- covalently labelled with the detectable moiety.
  • Fluorescent labels include e.g.
  • GFP green fluorescent protein
  • Radiolabels include radioisotopes such as Iodine 123 , Iodine 125 , Iodine 126 , Iodine 131 , Iodine 133 , Bromine 77 , Technetium” 171 , Indium 111 , Indium 113111 , Gallium 67 , Gallium 68 , Ruthenium 95 , Ruthenium 97 , Ruthenium 103 , Ruthenium 105 , Mercury 207 , Mercury 203 , Rhenium” 111 , Rhenium 101 , Rhenium 105 , Scandium 47 , Tellurium 121111 , Tellurium 122111 , Tellurium 125111 , Thulium 165 , Thuliuml 167 , Thulium 168 , Copper 67 , Fluorine 18 , Yttrium", Palladium 100 , Bismuth 217 and Antimony 211 .
  • Luminescent labels include as radioluminescent, chemiluminescent (e.g. acridinium ester, luminol, isoluminol) and bioluminescent labels.
  • Immuno- detectable labels include haptens, peptides/polypeptides, antibodies, receptors and ligands such as biotin, avidin, streptavidin or digoxigenin.
  • Nucleic acid labels include aptamers.
  • Enzymatic labels include e.g. peroxidase, alkaline phosphatase, glucose oxidase, beta-galactosidase and luciferase.
  • the antigen-binding molecules of the present invention are conjugated to a chemical moiety.
  • the chemical moiety may be a moiety for providing a therapeutic effect.
  • Antibody-drug conjugates are reviewed e.g. in Parslow et al., Biomedicines. 2016 Sep; 4(3): 14.
  • the chemical moiety may be a drug moiety (e.g. a cytotoxic agent).
  • the drug moiety may be a chemotherapeutic agent.
  • the drug moiety is selected from calicheamicin, DM1 , DM4, monomethylauristatin E (MMAE), monomethylauristatin F (MMAF), SN-38, doxorubicin, duocarmycin, D6.5 and PBD.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 130; and
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 131.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 132;
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 133.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 134; and (ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 135.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 136;
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 137.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 140;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 139;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 141 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 142.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 177;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 139.
  • the antigen-binding molecule comprises, or consists of: (i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:210; and
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:211.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:212; and
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:213.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:213;
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:211.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:214;
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:211.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:215;
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:211.
  • the antigen-binding molecule comprises, or consists of: (i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:214; and
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:216.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:215;
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:216.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:214;
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:217.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:215;
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:217.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:215;
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:218.
  • the antigen-binding molecule comprises, or consists of: (i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:215; and
  • polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:219.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:243.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:244.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:245.
  • the antigen-binding molecule comprises, or consists of: (i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:246.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:247.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:248.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:250.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:251.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:252.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
  • a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and (ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:253.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:254.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:255.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:256.
  • the antigen-binding molecule comprises, or consists of:
  • a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
  • a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:257.
  • the antigen-binding molecule comprises, or consists of:
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ;
  • polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:258.
  • the antigen-binding molecules described herein may be characterised by reference to certain functional properties.
  • the antigen-binding molecule described herein may possess one or more of the following properties:
  • BCMA inhibits interaction between BCMA and a ligand for BCMA (e.g. APRIL/BAFF);
  • a ligand for BCMA e.g. APRIL/BAFF
  • TACI inhibits interaction between TACI and a ligand for TACI (e.g. APRIL/BAFF);
  • a ligand for TACI e.g. APRIL/BAFF
  • phagocytic cells e.g. macrophages
  • the antigen-binding molecules and antigen-binding domains described herein preferably display specific binding to the relevant target antigen(s) (e.g. CD47, BCMA and/or TACI).
  • target antigen e.g. CD47, BCMA and/or TACI.
  • target antigen e.g. CD47, BCMA and/or TACI.
  • specific binding refers to binding which is selective for the antigen, and which can be discriminated from nonspecific binding to non-target antigen.
  • An antigen-binding molecule/domain that specifically binds to a target molecule preferably binds the target with greater affinity, and/or with greater duration than it binds to other, non-target molecules.
  • the ability of a given polypeptide to bind specifically to a given molecule can be determined by analysis according to methods known in the art, such as by ELISA, Surface Plasmon Resonance (SPR; see e.g. Hearty et al., Methods Mol Biol (2012) 907:41 1-442), Bio-Layer Interferometry (see e.g. Lad et al., (2015)
  • the extent of binding of the antigen-binding molecule to an non-target molecule is less than about 10% of the binding of the antibody to the target molecule as measured, e.g. by ELISA, SPR, Bio-Layer Interferometry or by RIA.
  • binding specificity may be reflected in terms of binding affinity where the antigen-binding molecule binds with a dissociation constant (KD) that is at least 0.1 order of magnitude (i.e. 0.1 x 10 n , where n is an integer representing the order of magnitude) greater than the KD of the antigen-binding molecule towards a non-target molecule.
  • KD dissociation constant
  • This may optionally be one of at least 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1 .0, 1 .5, or 2.0.
  • the antigen-binding molecule described herein binds to CD47 with a KD of 10 mM or less, preferably one of ⁇ 5 pM, ⁇ 2 pM, ⁇ 1 pM, ⁇ 500 nM, ⁇ 100 nM, ⁇ 75 nM, ⁇ 50 nM, ⁇ 40 nM, ⁇ 30 nM, ⁇ 20 nM, ⁇ 15 nM, ⁇ 12.5 nM, ⁇ 10 nM, ⁇ 9 nM, ⁇ 8 nM, ⁇ 7 nM, ⁇ 6 nM, ⁇ 5 nM, ⁇ 4 nM ⁇ 3 nM, ⁇ 2 nM, ⁇ 1 nM or ⁇ 500 pM.
  • the antigen-binding molecule described herein binds to BCMA with a KD of 10 mM or less, preferably one of ⁇ 5 mM, ⁇ 2 mM, ⁇ 1 pM, ⁇ 500 nM, ⁇ 100 nM, ⁇ 75 nM, ⁇ 50 nM, ⁇ 40 nM, ⁇ 30 nM, ⁇ 20 nM, ⁇ 15 nM, ⁇ 12.5 nM, ⁇ 10 nM, ⁇ 9 nM, ⁇ 8 nM, ⁇ 7 nM, ⁇ 6 nM, ⁇ 5 nM, ⁇ 4 nM ⁇ 3 nM, ⁇ 2 nM, ⁇ 1 nM or ⁇ 500 pM.
  • the antigen-binding molecule described herein binds to TACI with a KD of 10 pM or less, preferably one of ⁇ 5 pM, ⁇ 2 pM, ⁇ 1 pM, ⁇ 500 nM, ⁇ 100 nM, ⁇ 75 nM, ⁇ 50 nM, ⁇ 40 nM, ⁇ 30 nM, ⁇ 20 nM, ⁇ 15 nM, ⁇ 12.5 nM, ⁇ 10 nM, ⁇ 9 nM, ⁇ 8 nM, ⁇ 7 nM, ⁇ 6 nM, ⁇ 5 nM, ⁇ 4 nM ⁇ 3 nM, ⁇ 2 nM, ⁇ 1 nM or ⁇ 500 pM.

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Abstract

CD47 and BCMA/TACI antigen-binding molecules are disclosed. Also disclosed are nucleic acids and expression vectors encoding, compositions comprising, and methods using, the CD47 and BCMA/TACI antigen-binding molecules.

Description

CD47 and BCMA/TACI Antigen-Binding Molecules
This application claims priority from GB 1720426.4 filed 7 December 2017, the contents and elements of which are herein incorporated by reference for all purposes.
Field of the Invention
The present invention relates to the fields of molecular biology, more specifically antibody technology.
The present invention also relates to methods of medical treatment and prophylaxis.
Background to the Invention
CD47 is the“don’t-eat-me” signal and is ubiquitously expressed on normal cells where binding to SIRPa on macrophages inhibits phagocytosis. CD47 is commonly over-expressed in tumors where it correlates with immune evasion and poor prognosis. Blocking CD47-SIRPalpha interaction restores macrophage phagocytosis of tumor cells and anti-CD47 mAbs have shown anti-tumor efficacy in mouse models of solid tumors and hematological malignancies.
Nevertheless, the widespread expression of CD47 decreases the bioavailability of anti-CD47 mAbs at the tumor due to antigen sink effects, and also risks off-target toxicities, most substantially from cross-linking of erythrocytes that show high expression of CD47.
BCMA is expressed on cells of multiple myeloma, and the anti-BCMA antibody-drug conjugate J6M0- mcMMAF (GSK2857916) has been investigated for the treatment of multiple myeloma (see e.g. Tai et al., Blood. (2014) 123(20): 3128-3138). BCMA is also expressed by cells of B cell malignancies such as Hodgkin’s lymphoma, non-Hodgkin’s lymphoma (e.g. Burkitt lymphoma) and lymphocytic leukemia, and the BCMA/TACI antagonist Atacicept has been investigated as an agent for use in the treatment of multiple myeloma, B-cell chronic lymphocytic leukemia, and non-Hodgkin's lymphoma (Vasiliou, Drugs Fut 2008, 33(11 ): 921 ).
WO 2014/087248 A2 discloses monospecific anti-CD47 antibodies having an affinity for human CD47 as high as -23.6 nM. The high-affinity CD47 antibodies disclosed therein induce substantial
hemagglutination (see e.g. Example 8 of WO 2014/087248 A2).
Multiple myeloma (MM) is the second most common hematologic malignancy and the fourteenth leading cause of cancer deaths in the USA (estimated at over 12,000 deaths per year). The current treatment landscape for MM patients includes diverse classes of first and second generation agents administered as single therapy or in combination, including alkylating agents, histone deacetylase inhibitors, proteasome inhibitors, immunomodulatory drugs, monoclonal antibodies, and autologous stem cell transplantation.
However, existing treatments have important limitations. There are serious side effects associated with such treatment, which can reduce quality of life. Most patients relapse or become refractory to existing therapies, and palliative care often becomes the only option. Response rates decrease with increasing lines of therapy, and with relapsed and refractory cases. The recently approved anti-CD38 monoclonal antibody daratumumab has shown only a moderate improvement in clinical trials, has its own limitations due to reported cases of CD38 loss, and can potentially deplete CD38+ NK cells and monocytes.
Emerging therapies such as PD1/PD-L1 antibodies have shown severe adverse toxicity effects in clinical trials.
There is therefore a large unmet need for novel and more effective therapies for hematological malignancies, in particular for patients with relapsed or refractory disease.
Summary of the Invention
In a first aspect, the present invention provides an antigen-binding molecule, optionally isolated, which is capable of binding to CD47 and BCMA and/or TACI. In some embodiments the antigen-binding molecule comprises (i) an antigen-binding domain capable of binding to CD47, and (ii) an antigen-binding domain capable of binding to BCMA and/or TACI.
Also provided is an antigen-binding molecule, optionally isolated, which is capable of binding to BCMA. Also provided is an antigen-binding molecule, optionally isolated, which is capable of binding to TACI. Also provided is an antigen-binding molecule, optionally isolated, which is capable of binding to BCMA and/or TACI.
Also provided is an antigen-binding molecule, optionally isolated, which is capable of binding to CD47 in extracellular region 1.
In some embodiments the antigen-binding molecule is capable of binding to the V-type Ig-like domain of CD47. In some embodiments the antigen-binding molecule is capable of binding to a polypeptide comprising or consisting of the amino acid sequence shown in SEQ ID NO:9. In some embodiments the antigen-binding molecule is capable of inhibiting interaction between CD47 and SIRPa. In some embodiments the antigen-binding molecule is capable of increasing phagocytosis of CD47-expressing cells.
In some embodiments the antigen-binding molecule is capable of binding to a peptide or polypeptide comprising or consisting of the amino acid sequence of SEQ ID NO:21. In some embodiments the antigen-binding molecule comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:220
HC-CDR2 having the amino acid sequence of SEQ ID NO:221
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:222
LC-CDR2 having the amino acid sequence of SEQ ID NO:223
LC-CDR3 having the amino acid sequence of SEQ ID NO:224; or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises:
(a)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24
HC-CDR2 having the amino acid sequence of SEQ ID NO:25
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(b)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC-CDR2 or LC-CDR3 are substituted with another amino acid;
or
(c)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24
HC-CDR2 having the amino acid sequence of SEQ ID NO:25
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 190
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192 LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(d)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:190
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(e)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24
HC-CDR2 having the amino acid sequence of SEQ ID NO:25
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 191
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(f)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 191
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192 LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(g)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(h)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO:193;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises:
(a)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24
HC-CDR2 having the amino acid sequence of SEQ ID NO:25
HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or
(b)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188 HC-CDR2 having the amino acid sequence of SEQ ID NO: 189 HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32 LC-CDR2 having the amino acid sequence of SEQ ID NO:33 LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or
(c)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24 HC-CDR2 having the amino acid sequence of SEQ ID NO:25 HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 190 LC-CDR2 having the amino acid sequence of SEQ ID NO: 192 LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or
(d)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188 HC-CDR2 having the amino acid sequence of SEQ ID NO: 189 HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 190 LC-CDR2 having the amino acid sequence of SEQ ID NO: 192 LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or
(e)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24 HC-CDR2 having the amino acid sequence of SEQ ID NO:25 HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 191 LC-CDR2 having the amino acid sequence of SEQ ID NO: 192 LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or
(f) (i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 191
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or
(g)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or
(h)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO: 193.
In some embodiments the antigen-binding molecule comprises:
a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:23, 39, 229, 178, 180, 181 , 182 or 183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:31 , 44, 230, 179, 184, 185, 186 or 187.
In some embodiments the antigen-binding molecule comprises:
(i) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:23; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:31 ;
or (ii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:39; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:44
or
(iii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:229; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:230;
or
(iv) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 178; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:179;
or
(v) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 180; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:179;
or
(vi) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 181 ; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 179;
or
(vii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 182; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:179;
or
(viii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:179;
or
(ix) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 182; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:184;
or
(x) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 183; and a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:184;
or
(xi) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 182; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:185;
or
(xii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:185;
or
(xiii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:186;
or
(xiv) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 187.
In some embodiments the antigen-binding molecule is capable of binding to a peptide or polypeptide comprising or consisting of the amino acid sequence of SEQ ID NO:22.
In some embodiments the antigen-binding molecule comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:50
HC-CDR2 having the amino acid sequence of SEQ ID NO:51
HC-CDR3 having the amino acid sequence of SEQ ID NO:52,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:58
LC-CDR2 having the amino acid sequence of SEQ ID NO:59
LC-CDR3 having the amino acid sequence of SEQ ID NO:60;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs: HC-CDR1 having the amino acid sequence of SEQ ID NO:50
HC-CDR2 having the amino acid sequence of SEQ ID NO:51
HC-CDR3 having the amino acid sequence of SEQ ID NO:52; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:58
LC-CDR2 having the amino acid sequence of SEQ ID NO:59
LC-CDR3 having the amino acid sequence of SEQ ID NO:60.
In some embodiments the antigen-binding molecule comprises:
a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:49; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:57.
In some embodiments the antigen-binding molecule comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:66
HC-CDR2 having the amino acid sequence of SEQ ID NO:67
HC-CDR3 having the amino acid sequence of SEQ ID NO:68,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:74
LC-CDR2 having the amino acid sequence of SEQ ID NO:75
LC-CDR3 having the amino acid sequence of SEQ ID NO:76;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:66
HC-CDR2 having the amino acid sequence of SEQ ID NO:67
HC-CDR3 having the amino acid sequence of SEQ ID NO:68; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:74
LC-CDR2 having the amino acid sequence of SEQ ID NO:75
LC-CDR3 having the amino acid sequence of SEQ ID NO:76.
In some embodiments the antigen-binding molecule comprises:
a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:65; and a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:73.
In another aspect the present invention provides an antigen-binding molecule, optionally isolated, comprising (i) an antigen-binding molecule according to the invention, and (ii) an antigen-binding molecule capable of binding to an antigen other than CD47.
In some embodiments the antigen-binding molecule capable of binding to an antigen other than CD47 is capable of binding to BCMA and/or TACI.
In another aspect the present invention provides an antigen-binding molecule, optionally isolated, which is capable of binding to CD47 and BCMA and/or TACI.
In some embodiments the antigen-binding molecule comprises (i) an antigen-binding molecule capable of binding to CD47, and (ii) an antigen-binding molecule capable of binding to BCMA and/or TACI.
In some embodiments in accordance with various aspects of the present invention, the antigen-binding molecule capable of binding to BCMA is capable of binding to the extracellular domain of BCMA.
In some embodiments in accordance with various aspects of the present invention, the antigen-binding molecule capable of binding to TACI is capable of binding to the extracellular domain of TACI.
In some embodiments the antigen-binding molecule capable of binding to BCMA comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 103
HC-CDR2 having the amino acid sequence of SEQ ID NO: 104
HC-CDR3 having the amino acid sequence of SEQ ID NO: 105,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 1 1 1
LC-CDR2 having the amino acid sequence of SEQ ID NO: 1 12
LC-CDR3 having the amino acid sequence of SEQ ID NO:1 13;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
In some embodiments the antigen-binding molecule capable of binding to BCMA comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 103
HC-CDR2 having the amino acid sequence of SEQ ID NO: 104
HC-CDR3 having the amino acid sequence of SEQ ID NO: 105; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 1 1 1 LC-CDR2 having the amino acid sequence of SEQ ID NO: 1 12
LC-CDR3 having the amino acid sequence of SEQ ID NO: 1 13.
In some embodiments the antigen-binding molecule capable of binding to BCMA comprises:
a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:102; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 1 10.
In some embodiments the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI which comprises or consists of a polypeptide comprising a BCMA- or TACI- binding amino acid sequence. In some embodiments the BCMA- or TACI-binding amino acid sequence is derived from a ligand for BCMA and/or TACI. In some embodiments the BCMA- or TACI-binding amino acid sequence comprises or consists of a BCMA- or TACI-binding amino acid sequence derived from APRIL.
In some embodiments the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI which comprises or consists of:
(i) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:231 ; or
(ii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:232; or
(iii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:233.
In some embodiments the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI which comprises or consists of:
(i) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:234; or
(ii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:235; or
(iii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:236.
In some embodiments the antigen-binding molecule is capable of binding to cells expressing CD47,
BCMA and/or TACI at the cell surface.
In some embodiments the antigen-binding molecule is capable of inhibiting interaction between CD47 and SIRPa.
In some embodiments the antigen-binding molecule is capable of increasing phagocytosis of CD47- expressing cells. In some embodiments the antigen-binding molecule does not induce substantial hemagglutination.
In another aspect the present invention provides a chimeric antigen receptor (CAR) comprising an antigen-binding molecule according to the invention.
In another aspect the present invention provides an antigen-binding molecule, optionally isolated, which is capable of binding to BCMA and/or TACI, which comprises, or consists of, a polypeptide comprising a BCMA- or TACI-binding amino acid sequence.
In some embodiments the BCMA- or TACI-binding amino acid sequence comprises or consists of a BCMA- or TACI-binding amino acid sequence derived from APRIL.
In some embodiments the antigen-binding molecule comprises a polypeptide capable of binding to BCMA and/or TACI which comprises or consists of:
(i) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:231 ; or
(ii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:232; or
(iii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:233.
In some embodiments the antigen-binding molecule comprises a polypeptide capable of binding to BCMA and/or TACI which comprises or consists of:
(i) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:234; or
(ii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:235; or
(iii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:236.
In some embodiments the antigen-binding molecule further comprises an antigen-binding domain capable of binding to an antigen other than BCMA and TACI. In some embodiments the antigen other than BCMA and TACI is CD47.
In another aspect the present invention provides a nucleic acid, or a plurality of nucleic acids, optionally isolated, encoding an antigen-binding molecule or a CAR according to the invention.
In another aspect the present invention provides an expression vector, or a plurality of expression vectors, comprising a nucleic acid or a plurality of nucleic acids according to the invention. In another aspect the present invention provides a cell comprising an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, or an expression vector or a plurality of expression vectors according to the invention.
In another aspect the present invention provides a method comprising culturing a cell comprising a nucleic acid or a plurality of nucleic acids, or an expression vector or a plurality of expression vectors according to the invention, under conditions suitable for expression of the antigen-binding molecule or CAR from the nucleic acid(s) or expression vector(s).
In another aspect the present invention provides a composition comprising an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, an expression vector or a plurality of expression vectors, or a cell according to the invention.
In another aspect the present invention provides an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, an expression vector or a plurality of expression vectors, a cell, or a composition according to the invention for use in a method of medical treatment or prophylaxis.
In another aspect the present invention provides an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, an expression vector or a plurality of expression vectors, a cell, or a composition according to the invention for use in a method of treatment or prevention of a cancer.
In another aspect the present invention provides the use of an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, an expression vector or a plurality of expression vectors, a cell, or a composition according to the invention in the manufacture of a medicament for use in a method of treatment or prevention of a cancer.
In another aspect the present invention provides a method of treating or preventing a cancer, comprising administering to a subject a therapeutically or prophylactically effective amount of an antigen-binding molecule, a CAR, a nucleic acid or a plurality of nucleic acids, an expression vector or a plurality of expression vectors, a cell, or a composition according to the invention.
In another aspect the present invention provides a method for increasing phagocytosis of CD47- expressing cells, comprising contacting CD47-expressing cells with an antigen-binding molecule according to the invention.
In another aspect the present invention provides an in vitro complex, optionally isolated, comprising an antigen-binding molecule according to the invention bound to CD47, BCMA and/or TACI. In another aspect the present invention provides an in vitro complex, optionally isolated, comprising an antigenbinding molecule according to the invention bound to BCMA and/or TACI.
In another aspect the present invention provides a method comprising contacting a sample containing, or suspected to contain, CD47, BCMA and/or TACI with an antigen-binding molecule according to the invention, and detecting the formation of a complex of the antigen-binding molecule with CD47, BCMA and/or TACI. In another aspect the present invention provides a method comprising contacting a sample containing, or suspected to contain, BCMA and/or TACI with an antigen-binding molecule according to the invention, and detecting the formation of a complex of the antigen-binding molecule with BCMA and/or TACI.
In another aspect the present invention provides a subject for treatment with a CD47-targeted agent, a BCMA-targeted agent and/or a TACI-targeted agent, the method comprising contacting, in vitro, a sample from the subject with an antigen-binding molecule according to the invention and detecting the formation of a complex of the antigen-binding molecule with CD47, BCMA and/or TACI. In another aspect the present invention provides a subject for treatment with a BCMA-targeted agent and/or a TACI-targeted agent, the method comprising contacting, in vitro, a sample from the subject with an antigen-binding molecule according to the invention and detecting the formation of a complex of the antigen-binding molecule with BCMA and/or TACI.
In another aspect the present invention provides the use of an antigen-binding molecule according to the invention as an in vitro or in vivo diagnostic or prognostic agent.
In some embodiments in connection with various aspects of the present invention the cancer is selected from: a hematologic malignancy, a myeloid hematologic malignancy, a lymphoblastic hematologic malignancy, a B cell malignancy, multiple myeloma (MM), myelodysplastic syndrome (MDS), acute myeloid leukemia (AML), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), lymphocytic leukemia, lymphoma, B cell lymphoma, Hodgkin’s lymphoma (HL), non-Hodgkin’s lymphoma (NHL), Burkitt lymphoma, bladder cancer, brain cancer, glioblastoma, ovarian cancer, breast cancer, colon cancer, liver cancer, hepatocellular carcinoma, prostate cancer, lung cancer, Non-small Cell Lung Cancer (NSCLC), skin cancer and melanoma.
Description
The present invention provides antigen-binding molecules having combinations of desirable biophysical and/or functional properties as compared to antigen-binding molecules disclosed in the prior art.
Despite the emergence of promising new therapeutic strategies in B cell malignancies such as multiple myeloma (MM), there remains significant unmet need for better approaches. Large populations of tissue resident macrophages in the bone marrow represent an attractive therapeutic target for hematological malignancies. CD47, BCMA and TACI are highly co-expressed in all characterized MM cell lines and many patient samples, and play functional roles that reduce risk of antigen loss. Their expression levels are prognostic of the progression and outcome of MM.
Overexpression of CD47 is utilized by malignant hematopoietic cells to prevent macrophage clearance and evade immunesurveillance in the bone marrow microenvironment. APRIL secreted by bone marrow osteoclast activates BCMA/TACI receptors in multiple myeloma cells, and induces the upregulation of antiapoptotic, immunosuppressive, and osteoclastogenic genes through the canonical and non-canonical NF-kB pathway.
Aspects of the present invention relate to antigen-binding molecules capable of binding to both CD47 and BCMA and/or TACI. The bispecific CD47-binding, BCMA/TACI-binding antigen-binding molecules described herein display preferential binding to cells expressing both CD47 and BCMA/TACI, and are therefore useful for targeting myeloid hematologic malignancies, e.g. multiple myeloma. They represent an improved treatment for myeloid hematologic malignancies as compared e.g. to CD47-binding antibodies of the prior art, because the BCMA/TACI-binding arm targets the CD47-binding arm to the cancer cells, minimising off-target effects.
In aspects described herein antigen-binding molecules are provided which bind to human CD47 with high affinity, are cross-reactive with non-human primate CD47, preferentially bind to CD47- and BCMA/TACI- expressing cells, display potent inhibition of interaction between CD47 and SIRPa, and do not induce hemagglutination.
CD47
Human CD47 (also known as IAP, MER6 and OA3) is the protein identified by UniProt Q08722.
Alternative splicing of mRNA encoded by the human CD47 gene yields four isoforms which differ in the sequence of the C-terminal cytoplasmic tail region: isoform OA3-323 (UniProt: Q08722-1 , v1 ; SEQ ID NO:1 ); isoform OA3-293 (UniProt: Q08722-2; SEQ ID NO:2), which lacks the amino acid sequence corresponding to positions 293 to 323 of SEQ ID NO:1 ; isoform OA3-305 (UniProt: Q08722-3; SEQ ID NO:3), which comprises the substitutions K304N and A305N relative to SEQ ID NO:1 , and which lacks the amino acid sequence corresponding to positions 306 to 323 of SEQ ID NO:1 ; and isoform OA3-312 (UniProt: Q08722-4; SEQ ID NO:4), which lacks the amino acid sequence corresponding to positions 312 to 323 of SEQ ID NO:1.
The N-terminal 18 amino acids of SEQ ID NOs:1 to 4 constitute a signal peptide, and so the mature form of isoforms OA3-323, OA3-293, OA3-305 and OA3-312 (i.e. after processing to remove the signal peptide) have the amino acid sequences shown in SEQ ID NOs:5 to 8, respectively.
The structure and function of CD47 is reviewed e.g. in Sick et al., Br J Pharmacol. (2012) 167(7): 1415- 1430 and Willingham et al. Proc Natl Acad Sci U S A. (2012) 109(17): 6662-6667, both of which are hereby incorporated by reference in its entirety. CD47 is a ubiquitously-expressed ~50 kDa multi-pass membrane receptor that belongs to the immunoglobulin superfamily, comprising an N-terminal extracellular region (SEQ ID NO:10) having a V-type Ig-like domain (SEQ ID NO:9), five transmembrane domains (SEQ ID NOs:11 , 13, 15, 17 and 19), and a short C-terminal intracellular tail (SEQ ID NO:20).
CD47 is involved in cell-to-cell communication through ligating to the transmembrane signal-regulatory proteins (SIRPs) SIRPa and SIRPy and integrins (e.g. anb3 integrin), and also mediates cell-extracellular matrix interactions through binding to thrombospondin-1 (TSP-1 ). CD47 is involved in a wide range of cellular processes including adhesion, migration, proliferation and apoptosis, and plays a key role in immune processes and angiogenesis.
CD47 is the ligand for SIRPa, which expressed on macrophages and dendritic cells. Binding of CD47 to SIRPa on the surface of phagocytic cells, triggers SIRPa ITIM signalling, inhibiting phagocytosis of the CD47 expressing cell. CD47 is a multi-pass transmembrane protein, whereas SIRPa consists of 4 extracellular domains and an intracellular ITIM-domain. The terminal V-set domain of SIRPa interacts with the Ig V-like domain of CD47.
Upon binding CD47, SIRPa initiates a signalling cascade that results in the inhibition of phagocytosis of the CD47-expressing cell. This“don't eat me” signal is transmitted by phosphorylation by Src kinases of immunoreceptor tyrosine-based inhibitor motifs (ITIMs) in the cytoplasmic domain of SIRPa. Subsequent binding and activation of Src homology-2 (SH2) domain-containing tyrosine phosphatases SHP-1 and SHP-2 blocks phagocytosis, potentially through preventing the accumulation of myosin-IIA at the phagocytic synapse. Disrupting the interaction along the antiparallel beta sheets of CD47 prevents downstream ITIM-mediated signalling, enabling phagocytes to‘eat’ and destroy cancer cells.
Aberrant CD47 expression/activity is implicated in the development and progression of many cancers, and accumulating evidence suggests that cell-surface expression of CD47 is a common mechanism by which cancer cells protect themselves from phagocytosis.
In this specification“CD47” refers to CD47 from any species and includes CD47 isoforms, fragments, variants or homologues from any species.
As used herein, a“fragment”,“variant” or“homologue” of a protein may optionally be characterised as having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of the reference protein (e.g. a reference isoform). In some embodiments fragments, variants, isoforms and homologues of a reference protein may be characterised by ability to perform a function performed by the reference protein.
A“fragment” generally refers to a fraction of the reference protein. A“variant” generally refers to a protein having an amino acid sequence comprising one or more amino acid substitutions, insertions, deletions or other modifications relative to the amino acid sequence of the reference protein, but retaining a considerable degree of sequence identity (e.g. at least 60%) to the amino acid sequence of the reference protein. An“isoform” generally refers to a variant of the reference protein expressed by the same species as the species of the reference protein (e.g. OA3-323, OA3-293, OA3-305 and OA3-312 are all isoforms of one another). A“homologue” generally refers to a variant of the reference protein produced by a different species as compared to the species of the reference protein. For example, human CD47 isoform OA3-323 (Q08722-1 , v1 ; SEQ ID NO:1 ) and Rhesus macaque CD47 (UniProt: F7F5Y9-1 , v2; SEQ ID NO:145) are homologues of one another. Homologues include orthologues. A“fragment” of a reference protein may be of any length (by number of amino acids), although may optionally be at least 25% of the length of the reference protein (that is, the protein from which the fragment is derived) and may have a maximum length of one of 50%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% of the length of the reference protein.
A fragment of CD47 may have a minimum length of one of 10, 20, 30, 40, 50, 100, 150, 200, 250 or 300 amino acids, and may have a maximum length of one of 20, 30, 40, 50, 100, 150, 200, 250 or 300 amino acids.
In some embodiments, the CD47 is CD47 from a mammal (e.g. a primate (rhesus, cynomolgous, nonhuman primate or human) and/or a rodent (e.g. rat or murine) CD47). Isoforms, fragments, variants or homologues of CD47 may optionally be characterised as having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of an immature or mature CD47 isoform from a given species, e.g. human.
Isoforms, fragments, variants or homologues may optionally be functional isoforms, fragments, variants or homologues, e.g. having a functional property/activity of the reference CD47 (e.g. human CD47 isoform OA3-323), as determined by analysis by a suitable assay for the functional property/activity. For example, an isoform, fragment, variant or homologue of CD47 may display association with one or more of: SIRPa, SIRPy, TSP-1 and anb3 integrin.
In some embodiments, the CD47 comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to one of SEQ ID NOs:1 to 8.
In some embodiments, a fragment of CD47 comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to one of SEQ ID NO:9 or 10.
CD47 is an attractive therapeutic target. CD47 is usually expressed on the surface of normal healthy cells and migrating hematopoietic stem cells to prevent phagocytosis, and is upregulated in nearly all hematological and solid tumors, including MM cells, to evade immune surveillance and escape phagocytosis. Disrupting the interaction between CD47 and SIRPa enables phagocytes to“eat” and destroy cancer cells. CD47 blockade repolarises tumor-associated macrophages into a pro-inflammatory, anti-tumor state, and clearance of malignant cells by phagocytic cells offers an additional route for neoantigen presentation to adaptive immune system.
BCMA and TACI
Human B cell maturation antigen (BCMA; also known as TNFRSF17) is the protein identified by UniProt Q02223. Alternative splicing of mRNA encoded by the human TNFRSF17 gene yields two isoforms: isoform 1 (UniProt: Q02223-1 , v2; SEQ ID NO:95) and isoform 2 (UniProt: Q02223-2; SEQ ID NO:96), in which the amino acid sequence corresponding to positions 44 to 93 of SEQ ID NO:95 are substituted with “R”.
The structure and function of BCMA is reviewed e.g. in Coquery and Erickson, Crit Rev Immunol. (2012) 32(4): 287-305, which is hereby incorporated by reference in its entirety. BCMA is a cell surface receptor of the TNF receptor superfamily. BCMA comprises an N-terminal extracellular domain (SEQ ID NO:97) having a cysteine-rich TNFR repeat region (SEQ ID NO:98). The extracellular domain is connected by a transmembrane domain (SEQ ID NO:99) to a cytoplasmic domain (SEQ ID NO: 100), containing a region which is important for TRAF interaction and activation of NFKB (SEQ ID NO:101 ; Hatzoglou et al., J Immunol. (2000) 165(3): 1322-30).
BCMA is expressed by mature B lymphocytes, and plays an important role in differentiation of B cells into plasma cells (see Tai and Anderson, Immunotherapy (2015) 7(11 ): 1 187-1199, which is hereby incorporated by reference in its entirety). BCMA is expressed by B-cell lineage cells, particularly in the interfollicular region of the germinal center, by plasmablasts and by differentiated plasma cells. BCMA expression is selectively induced during plasma cell differentiation. BCMA may enhance humoral immunity by stimulating the survival of normal plasma cells and plasmablasts, but is absent on naive and most memory B cells. BCMA is also expressed by CD138 BDCA-4+ plasmacytoid dendritic cells
(Chauhan et al,. Cancer Cell (2009) 16(4):309-23).
Binding of B cell activation factor (BAFF) and/or a proliferation-inducing ligand (APRIL) to BCMA activates NFKB and MAPK8/JNK intracellular signalling pathways, and thereby promotes the survival and proliferation of BCMA-expressing cells. BCMA is expressed at elevated levels on malignant plasma cells in multiple myeloma. Indeed, BCMA is the most selectively expressed cell surface receptor on MM cell lines and patient MM cells. Serum BCMA levels are also higher in MM patients versus healthy donors.
In this specification“BCMA” refers to BCMA from any species and includes BCMA isoforms, fragments, variants or homologues from any species.
A fragment of BCMA may have a minimum length of one of 10, 20, 30, 40, 50, 100, 150 or 175 amino acids, and may have a maximum length of one of 20, 30, 40, 50, 100, 125, 150 or 175 amino acids.
In some embodiments, the BCMA is BCMA from a mammal (e.g. a primate (rhesus, cynomolgous, or human) and/or a rodent (e.g. rat or murine) BCMA). Isoforms, fragments, variants or homologues of BCMA may optionally be characterised as having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of an immature or mature BCMA isoform from a given species, e.g. human.
Isoforms, fragments, variants or homologues may optionally be functional isoforms, fragments, variants or homologues, e.g. having a functional property/activity of the reference BCMA (e.g. human BCMA isoform 1 ), as determined by analysis by a suitable assay for the functional property/activity. For example, an isoform, fragment, variant or homologue of BCMA may display association with e.g. BAFF and/or APRIL. In some embodiments, the BCMA comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:95 or 96.
In some embodiments, a fragment of BCMA comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:97.
Transmembrane activator and CAML interactor (TACI; also known as TNFRSF13B) is the protein identified by UniProt 014836. Alternative splicing of mRNA encoded by the human TNFRSF13B gene yields three isoforms: isoform 1 (UniProt: 014836-1 , v1 ; SEQ ID NO:260), isoform 2 (UniProt: 014836-2; SEQ ID NO:261 ), in which the amino acid sequence corresponding to positions 21 to 67 of SEQ ID NO:260 are substituted with“W”, and isoform 3 (UniProt: 014836-3; SEQ ID NO:262), in which the amino acid sequence corresponding to positions 150 to 176 of SEQ ID NO:260 are substituted with a 27 amino acid sequence, and lacking the amino acid sequence corresponding to positions 177 to 293 of SEQ ID NO:260.
The structure and function of BCMA is reviewed e.g. in Bossen and Schneider, Semin Immunol (2006) 18(5):263-275, which is hereby incorporated by reference in its entirety. TACI is a cell surface receptor of the TNF receptor superfamily, and comprises an N-terminal extracellular domain (SEQ ID NO:263) having two cysteine-rich TNFR repeat regions (SEQ ID NOs:264 and 265). The extracellular domain is connected by a transmembrane domain (SEQ ID NO:266) to a cytoplasmic domain (SEQ ID NO:267).
TACI is expressed by B lymphocytes, and is the receptor for calcium-modulator and cyclophilin ligand (CAML), BAFF and APRIL (Wu et al., Journal of Biological Chemistry (2000) 275 (45):35478-85). BAFF and APRIL signal through TACI, inducing activation of several transcription factors including NFAT, AP-1 , and NFKB.
TACI expression is upregulated in B cell malignancies such as multiple myeloma (MM). MM cell lines and fresh tumor samples from patients have been shown to bind soluble BAFF and express BCMA, TACI, and BAFF-R, and BAFF modulates the proliferative capacity of cytokine-stimulated MM cells, likely through its ability to promote survival via signalling through these receptors (Novak et al., Blood (2004) 103:689- 694).
In this specification“TACI” refers to TACI from any species and includes TACI isoforms, fragments, variants or homologues from any species.
A fragment of TACI may have a minimum length of one of 10, 20, 30, 40, 50, 100, 150, 200 or 250 amino acids, and may have a maximum length of one of 20, 30, 40, 50, 100, 125, 150, 200 or 250 amino acids. In some embodiments, the TACI is TACI from a mammal (e.g. a primate (rhesus, cynomolgous, or human) and/or a rodent (e.g. rat or murine) TACI). Isoforms, fragments, variants or homologues of TACI may optionally be characterised as having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of an immature or mature TACI isoform from a given species, e.g. human.
Isoforms, fragments, variants or homologues may optionally be functional isoforms, fragments, variants or homologues, e.g. having a functional property/activity of the reference TACI (e.g. human TACI isoform 1 ), as determined by analysis by a suitable assay for the functional property/activity. For example, an isoform, fragment, variant or homologue of TACI may display association with e.g. BAFF and/or APRIL.
In some embodiments, the TACI comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:260, 261 or 262.
In some embodiments, a fragment of TACI comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:263.
BCMA and TACI are attractive therapeutic targets. BCMA and TACI are differentially expressed during the differentiation of immature B cells to mature plasma cells, and are highly expressed in MM cell lines and CD138+ cells from MM patients. Binding of APRIL to BCMA/TACI promotes cell survival, proliferation, and immunosuppression through the canonical and non-canonical NF-kB signalling pathways. Disrupting the interaction between APRIL and BCMA/TACI with competitive antagonists will inhibit downstream BCMA/TACI-mediated signalling.
Antigen-binding molecules
The present invention provides antigen-binding molecules. In aspects of the present invention the antigen-binding molecules are capable of binding to CD47. In aspects of the present invention the antigen-binding molecules are capable of binding to BCMA and/or TACI. In aspects of the present invention the antigen-binding molecules are capable of binding to CD47 and BCMA and/or TACI. In aspects of the present invention the antigen-binding molecules comprise (i) an antigen-binding domain capable of binding to CD47 and (ii) an antigen-binding domain capable of binding to BCMA and/or TACI.
An“antigen-binding molecule” refers to a molecule which is capable of binding to a target antigen, and encompasses monoclonal antibodies, polyclonal antibodies, monospecific and multispecific antibodies (e.g., bispecific antibodies), and antibody fragments (e.g. Fv, scFv, Fab, scFab, F(ab’)2, Fabå, diabodies, triabodies, scFv-Fc, minibodies, single domain antibodies (e.g. VhH), etc.), as long as they display binding to the relevant target molecule(s).
The antigen-binding molecule of the present invention comprises a moiety or moieties capable of binding to a target antigen(s). In some embodiments, the moiety capable of binding to a target antigen comprises an antibody heavy chain variable region (VH) and an antibody light chain variable region (VL) of an antibody capable of specific binding to the target antigen. In some embodiments, the moiety capable of binding to a target antigen comprises or consists of an aptamer capable of binding to the target antigen, e.g. a nucleic acid aptamer (reviewed, for example, in Zhou and Rossi Nat Rev Drug Discov. 2017 16(3): 181-202). In some embodiments, the moiety capable of binding to a target antigen comprises or consists of a antigen-binding peptide/polypeptide, e.g. a peptide aptamer, thioredoxin, monobody, anticalin, Kunitz domain, avimer, knottin, fynomer, atrimer, DARPin, affibody, nanobody (i.e. a singledomain antibody (sdAb)) affilin, armadillo repeat protein (ArmRP), OBody or fibronectin - reviewed e.g. in Reverdatto et al., Curr Top Med Chem. 2015; 15(12): 1082-1101 , which is hereby incorporated by reference in its entirety (see also e.g. Boersma et al., J Biol Chem (2011 ) 286:41273-85 and Emanuel et al., Mabs (2011 ) 3:38-48).
The antigen-binding molecules of the present invention generally comprise an antigen-binding domain comprising a VH and a VL of an antibody capable of specific binding to the target antigen. The antigenbinding domain formed by a VH and a VL may also be referred to herein as an Fv region.
In some aspects and embodiments, the antigen-binding molecules of the present invention comprise antigen-binding moieties derived from a ligand for the target antigen.
An antigen-binding molecule may be, or may comprise, an antigen-binding polypeptide, or an antigenbinding polypeptide complex. An antigen-binding molecule may comprise more than one polypeptide which together form an antigen-binding domain. The polypeptides may associate covalently or non- covalently. In some embodiments the polypeptides form part of a larger polypeptide comprising the polypeptides (e.g. in the case of scFv comprising VH and VL, or in the case of scFab comprising VH-CH1 and VL-CL).
An antigen-binding molecule may refer to a non-covalent or covalent complex of more than one polypeptide (e.g. 2, 3, 4, 6, or 8 polypeptides), e.g. an IgG-like antigen-binding molecule comprising two heavy chain polypeptides and two light chain polypeptides.
The antigen-binding molecules of the present invention may be designed and prepared using the sequences of monoclonal antibodies (mAbs) capable of binding to CD47, BCMA or TACI. Antigen-binding regions of antibodies, such as single chain variable fragment (scFv), Fab and F(ab’)2 fragments may also be used/provided. An“antigen-binding region” is any fragment of an antibody which is capable of binding to the target for which the given antibody is specific.
In some aspects and embodiments, antigen-binding molecules of the present invention may be designed and prepared from the amino acid sequence of a ligand for the target antigen (e.g. BCMA and/or TACI).
Antibodies generally comprise six complementarity-determining regions CDRs; three in the heavy chain variable (VH) region: HC-CDR1 , HC-CDR2 and HC-CDR3, and three in the light chain variable (VL) region: LC-CDR1 , LC-CDR2, and LC-CDR3. The six CDRs together define the paratope of the antibody, which is the part of the antibody which binds to the target antigen.
The VH region and VL region comprise framework regions (FRs) either side of each CDR, which provide a scaffold for the CDRs. From N-terminus to C-terminus, VH regions comprise the following structure: N term-[HC-FR1]-[HC-CDR1]-[HC-FR2]-[HC-CDR2]-[HC-FR3]-[HC-CDR3]-[HC-FR4]-C term; and VL regions comprise the following structure: N term-[LC-FR1]-[LC-CDR1]-[LC-FR2]-[LC-CDR2]-[LC-FR3]- [LC-CDR3]-[LC-FR4]-C term.
There are several different conventions for defining antibody CDRs and FRs, such as those described in Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, MD (1991 ), Chothia et al., J. Mol. Biol. 196:901-917 (1987), and VBASE2, as described in Retter et al., Nucl. Acids Res. (2005) 33 (suppl 1 ): D671-D674. The CDRs and FRs of the VH regions and VL regions of the antibody clones described herein were defined according to the international IMGT (ImMunoGeneTics) information system (LeFranc et al., Nucleic Acids Res. (2015) 43 (Database issue):D413-22), which uses the IMGT V-DOMAIN numbering rules as described in Lefranc et al., Dev. Comp. Immunol. (2003) 27:55-77.
In some embodiments, the antigen-binding molecule comprises the CDRs of an antigen-binding molecule which is capable of binding to CD47. In some embodiments, the antigen-binding molecule comprises the FRs of an antigen-binding molecule which is capable of binding to CD47. In some embodiments, the antigen-binding molecule comprises the CDRs and the FRs of an antigen-binding molecule which is capable of binding to CD47. That is, in some embodiments the antigen-binding molecule comprises the VH region and the VL region of an antigen-binding molecule which is capable of binding to CD47.
In some embodiments the antigen-binding molecule comprises a VH region and a VL region which is, or which is derived from, the VH/VL region of a CD47-binding antibody clone described herein (i.e. anti- CD47 antibody clones 1-1-A1_BM, 1-1-A1 , 5-48-A6, 5-48-D2, 11A1 H1 , 11A1 H2, 11A1 H3, 11A1 H4, 11A1 H5, 11A1 H6, 1 1A1 H7, 11A1 H8, 11A1 H9, 1 1A1 H10 or 11A1 H11 ).
In some embodiments the antigen-binding molecule comprises a VH region according to one of (1 ) to (4) below:
(1 ) a VH region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24
HC-CDR2 having the amino acid sequence of SEQ ID NO:25
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid.
(2) a VH region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:50
HC-CDR2 having the amino acid sequence of SEQ ID NO:51 HC-CDR3 having the amino acid sequence of SEQ ID NO:52,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid.
(3) a VH region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:66
HC-CDR2 having the amino acid sequence of SEQ ID NO:67
HC-CDR3 having the amino acid sequence of SEQ ID NO:68,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid.
(4) a VH region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:220
HC-CDR2 having the amino acid sequence of SEQ ID NO:221
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid.
(5) a VH region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises a VH region according to one of (6) to (15) below:
(6) a VH region incorporating the following FRs:
HC-FR1 having the amino acid sequence of SEQ ID NO:27
HC-FR2 having the amino acid sequence of SEQ ID NO:28
HC-FR3 having the amino acid sequence of SEQ ID NO:29
HC-FR4 having the amino acid sequence of SEQ ID NO:30,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
(7) a VH region incorporating the following FRs:
HC-FR1 having the amino acid sequence of SEQ ID NO:40
HC-FR2 having the amino acid sequence of SEQ ID NO:41
HC-FR3 having the amino acid sequence of SEQ ID NO:42
HC-FR4 having the amino acid sequence of SEQ ID NO:43,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid. (8) a VH region incorporating the following FRs:
HC-FR1 having the amino acid sequence of SEQ ID NO:53
HC-FR2 having the amino acid sequence of SEQ ID NO:54
HC-FR3 having the amino acid sequence of SEQ ID NO:55
HC-FR4 having the amino acid sequence of SEQ ID NO:56,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
(9) a VH region incorporating the following FRs:
HC-FR1 having the amino acid sequence of SEQ ID NO:69
HC-FR2 having the amino acid sequence of SEQ ID NO:70
HC-FR3 having the amino acid sequence of SEQ ID NO:71
HC-FR4 having the amino acid sequence of SEQ ID NO:72,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
(10) a VH region incorporating the following FRs:
HC-FR1 having the amino acid sequence of SEQ ID NO: 194
HC-FR2 having the amino acid sequence of SEQ ID NO:225
HC-FR3 having the amino acid sequence of SEQ ID NO:226
HC-FR4 having the amino acid sequence of SEQ ID NO:227,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC- FR3, or HC-FR4 are substituted with another amino acid.
(1 1 ) a VH region incorporating the following FRs:
HC-FR1 having the amino acid sequence of SEQ ID NO: 194
HC-FR2 having the amino acid sequence of SEQ ID NO: 195
HC-FR3 having the amino acid sequence of SEQ ID NO: 198
HC-FR4 having the amino acid sequence of SEQ ID NO:203,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
(12) a VH region incorporating the following FRs:
HC-FR1 having the amino acid sequence of SEQ ID NO:194
HC-FR2 having the amino acid sequence of SEQ ID NO: 195
HC-FR3 having the amino acid sequence of SEQ ID NO: 199
HC-FR4 having the amino acid sequence of SEQ ID NO:203,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
(13) a VH region incorporating the following FRs: HC-FR1 having the amino acid sequence of SEQ ID NO: 194
HC-FR2 having the amino acid sequence of SEQ ID NO: 196
HC-FR3 having the amino acid sequence of SEQ ID NO:200
HC-FR4 having the amino acid sequence of SEQ ID NO:204,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
(14) a VH region incorporating the following FRs:
HC-FR1 having the amino acid sequence of SEQ ID NO: 194
HC-FR2 having the amino acid sequence of SEQ ID NO: 197
HC-FR3 having the amino acid sequence of SEQ ID NO:201
HC-FR4 having the amino acid sequence of SEQ ID NO:204,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
(15) a VH region incorporating the following FRs:
HC-FR1 having the amino acid sequence of SEQ ID NO: 194
HC-FR2 having the amino acid sequence of SEQ ID NO: 197
HC-FR3 having the amino acid sequence of SEQ ID NO:202
HC-FR4 having the amino acid sequence of SEQ ID NO:203,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises a VH region comprising the CDRs according to one of (1 ), (2), (3), (4) or (5) above, and the FRs according to one of (6), (7), (8), (9), (10), (1 1 ), (12), (13), (14) or (15) above.
In some embodiments the antigen-binding molecule comprises a VH region according to one of (16) to (25) below:
(16) a VH region comprising the CDRs according to (1 ) and the FRs according to (6).
(17) a VH region comprising the CDRs according to (1 ) and the FRs according to (7).
(18) a VH region comprising the CDRs according to (2) and the FRs according to (8).
(19) a VH region comprising the CDRs according to (3) and the FRs according to (9).
(20) a VH region comprising the CDRs according to (4) and the FRs according to (10).
(21 ) a VH region comprising the CDRs according to (1 ) and the FRs according to (1 1 ).
(22) a VH region comprising the CDRs according to (1 ) and the FRs according to (12). (23) a VH region comprising the CDRs according to (1 ) and the FRs according to (13).
(24) a VH region comprising the CDRs according to (1 ) and the FRs according to (14).
(25) a VH region comprising the CDRs according to (5) and the FRs according to (15).
In some embodiments the antigen-binding molecule comprises a VH region according to one of (26) to (34) below:
(26) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:23.
(27) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:39.
(28) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:49.
(29) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:65.
(31 ) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:229.
(31 ) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO: 178.
(32) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:180.
(33) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO: 181. (34) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:182.
(35) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:183.
In some embodiments the antigen-binding molecule comprises a VL region according to one of (36) to (43) below:
(36) a VL region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
(37) a VL region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:58
LC-CDR2 having the amino acid sequence of SEQ ID NO:59
LC-CDR3 having the amino acid sequence of SEQ ID NO:60;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
(38) a VL region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:74
LC-CDR2 having the amino acid sequence of SEQ ID NO:75
LC-CDR3 having the amino acid sequence of SEQ ID NO:76;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
(39) a VL region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:222
LC-CDR2 having the amino acid sequence of SEQ ID NO:223
LC-CDR3 having the amino acid sequence of SEQ ID NO:224;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
(40) a VL region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 190
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
(41 ) a VL region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 191
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
(42) a VL region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
(43) a VL region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO: 193;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises a VL region according to one of (44) to (50) below:
(44) a VL region incorporating the following FRs:
LC-FR1 having the amino acid sequence of SEQ ID NO:35
LC-FR2 having the amino acid sequence of SEQ ID NO:36
LC-FR3 having the amino acid sequence of SEQ ID NO:37
LC-FR4 having the amino acid sequence of SEQ ID NO:38,
or a variant thereof in which one or two or three amino acids in one or more of LC-FR1 , LC-FR2, LC-FR3, or LC-FR4 are substituted with another amino acid.
(45) a VL region incorporating the following FRs:
LC-FR1 having the amino acid sequence of SEQ ID NO:45
LC-FR2 having the amino acid sequence of SEQ ID NO:46
LC-FR3 having the amino acid sequence of SEQ ID NO:47
LC-FR4 having the amino acid sequence of SEQ ID NO:48,
or a variant thereof in which one or two or three amino acids in one or more of LC-FR1 , LC-FR2, LC-FR3, or LC-FR4 are substituted with another amino acid. (46) a VL region incorporating the following FRs:
LC-FR1 having the amino acid sequence of SEQ ID NO:61
LC-FR2 having the amino acid sequence of SEQ ID NO:62
LC-FR3 having the amino acid sequence of SEQ ID NO:63
LC-FR4 having the amino acid sequence of SEQ ID NO:64,
or a variant thereof in which one or two or three amino acids in one or more of LC-FR1 , LC-FR2, LC-FR3, or LC-FR4 are substituted with another amino acid.
(47) a VL region incorporating the following FRs:
LC-FR1 having the amino acid sequence of SEQ ID NO:77
LC-FR2 having the amino acid sequence of SEQ ID NO:78
LC-FR3 having the amino acid sequence of SEQ ID NO:79
LC-FR4 having the amino acid sequence of SEQ ID NO:80,
or a variant thereof in which one or two or three amino acids in one or more of LC-FR1 , LC-FR2, LC-FR3, or LC-FR4 are substituted with another amino acid.
(48) a VL region incorporating the following FRs:
LC-FR1 having the amino acid sequence of SEQ ID NO:205
LC-FR2 having the amino acid sequence of SEQ ID NO:206
LC-FR3 having the amino acid sequence of SEQ ID NO:228
LC-FR4 having the amino acid sequence of SEQ ID NO:209,
or a variant thereof in which one or two or three amino acids in one or more of LC-FR1 , LC-FR2, LC-FR3, or LC-FR4 are substituted with another amino acid.
(49) a VL region incorporating the following FRs:
LC-FR1 having the amino acid sequence of SEQ ID NO:205
LC-FR2 having the amino acid sequence of SEQ ID NO:206
LC-FR3 having the amino acid sequence of SEQ ID NO:207
LC-FR4 having the amino acid sequence of SEQ ID NO:209,
or a variant thereof in which one or two or three amino acids in one or more of LC-FR1 , LC-FR2, LC-FR3, or LC-FR4 are substituted with another amino acid.
(50) a VL region incorporating the following FRs:
LC-FR1 having the amino acid sequence of SEQ ID NO:205
LC-FR2 having the amino acid sequence of SEQ ID NO:206
LC-FR3 having the amino acid sequence of SEQ ID NO:208
LC-FR4 having the amino acid sequence of SEQ ID NO:209,
or a variant thereof in which one or two or three amino acids in one or more of LC-FR1 , LC-FR2, LC-FR3, or LC-FR4 are substituted with another amino acid. In some embodiments the antigen-binding molecule comprises a VL region comprising the CDRs according to one of (36), (37), (38), (39), (40), (41 ), (42) or (43) above, and the FRs according to one of (44), (45), (46), (47), (48), (49) or (50) above.
In some embodiments the antigen-binding molecule comprises a VL region according to one of (51 ) to (60) below:
(51 ) a VL region comprising the CDRs according to (36) and the FRs according to (43).
52) a VL region comprising the CDRs according to (36) and the FRs according to (44).
(53) a VL region comprising the CDRs according to (37) and the FRs according to (45).
(54) a VL region comprising the CDRs according to (38) and the FRs according to (46).
(55) a VL region comprising the CDRs according to (39) and the FRs according to (48).
(56) a VL region comprising the CDRs according to (36) and the FRs according to (49).
(57) a VL region comprising the CDRs according to (40) and the FRs according to (50).
(58) a VL region comprising the CDRs according to (41 ) and the FRs according to (50).
(59) a VL region comprising the CDRs according to (42) and the FRs according to (50).
(60) a VL region comprising the CDRs according to (43) and the FRs according to (49).
In some embodiments the antigen-binding molecule comprises a VL region according to one of (61 ) to (70) below:
(61 ) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:31.
(62) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:44.
(63) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:57.
(64) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:73. (65) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:230.
(66) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO: 179.
(67) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:184.
(68) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO: 185.
(69) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO: 186.
(70) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:187.
In some embodiments the antigen-binding molecule comprises a VH region according to any one of (1 ) to (35) above, and a VL region according to any one of (36) to (70) above.
The present disclosure provides an antigen-binding molecule capable of binding to BCMA. The present disclosure also provides an antigen-binding molecule capable of binding to TACI. The present disclosure also provides an antigen-binding molecule capable of binding to BCMA and/or TACI.
In some embodiments, the antigen-binding molecule comprises the CDRs of an antigen-binding molecule which is capable of binding to BCMA and/or TACI. In some embodiments, the antigen-binding molecule comprises the FRs of an antigen-binding molecule which is capable of binding to BCMA and/or TACI. In some embodiments, the antigen-binding molecule comprises the CDRs and the FRs of an antigenbinding molecule which is capable of binding to BCMA and/or TACI. That is, in some embodiments the antigen-binding molecule comprises the VH region and the VL region of an antigen-binding molecule which is capable of binding to BCMA and/or TACI.
In some embodiments the antigen-binding molecule antigen-binding molecule which is capable of binding to BCMA is also capable of binding to TACI. That is, in some embodiments the antigen-binding molecule of the present invention comprises the CDRs, FRs, or the CDRs and FRs (i.e. the VH and VL region) of an antigen-binding molecule which is cross-reactive for BCMA and TACI. Antibodies which are crossreactive for BCMA and TACI are described e.g. in WO 2002066516 A2, which is hereby incorporated by reference in its entirety.
In some embodiments the antigen-binding molecule comprises a VH region and a VL region which is, or which is derived from, the VH/VL region of a BCMA-binding antibody, a TACI-binding antibody, or an antibody capable of binding to BCMA and TACI. In some embodiments the antigen-binding molecule comprises a VH region and a VL region which is, or which is derived from, the VH/VL region of a BCMA- binding antibody clone described herein, i.e. anti-BCMA antibody clone J6M0 (described e.g. in WO 2012/163805 A1 ).
In some embodiments the antigen-binding molecule comprises a VH region according to (71 ):
(71 ) a VH region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 103
HC-CDR2 having the amino acid sequence of SEQ ID NO: 104
HC-CDR3 having the amino acid sequence of SEQ ID NO:105,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises a VH region according to (72):
(72) a VH region incorporating the following FRs:
HC-FR1 having the amino acid sequence of SEQ ID NO: 106
HC-FR2 having the amino acid sequence of SEQ ID NO: 107
HC-FR3 having the amino acid sequence of SEQ ID NO: 108
HC-FR4 having the amino acid sequence of SEQ ID NO:109,
or a variant thereof in which one or two or three amino acids in one or more of HC-FR1 , HC-FR2, HC-FR3, or HC-FR4 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises a VH region according to (73):
(73) a VH region comprising the CDRs according to (71 ) and the FRs according to (72).
In some embodiments the antigen-binding molecule comprises a VH region according to (74):
(74) a VH region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO: 102.
In some embodiments the antigen-binding molecule comprises a VL region according to (75):
(75) a VL region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 1 1 1
LC-CDR2 having the amino acid sequence of SEQ ID NO: 1 12
LC-CDR3 having the amino acid sequence of SEQ ID NO: 1 13, or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2, or LC-CDR3 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises a VL region according to (76):
(76) a VL region incorporating the following FRs:
LC-FR1 having the amino acid sequence of SEQ ID NO:114
LC-FR2 having the amino acid sequence of SEQ ID NO:115
LC-FR3 having the amino acid sequence of SEQ ID NO:116
LC-FR4 having the amino acid sequence of SEQ ID NO:1 17,
or a variant thereof in which one or two or three amino acids in one or more of LC-FR1 , LC-FR2, LC-FR3, or LC-FR4 are substituted with another amino acid.
In some embodiments the antigen-binding molecule comprises a VL region according to (77):
(77) a VL region comprising the CDRs according to (75) and the FRs according to (76).
In some embodiments the antigen-binding molecule comprises a VL region according to (78):
(78) a VL region comprising an amino acid sequence having at least 70% sequence identity more preferably one of at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%,
96%, 97%, 98%, 99%, or 100%, sequence identity to the amino acid sequence of SEQ ID NO:110.
In some embodiments the antigen-binding molecule comprises a VH region according to any one of (71 ) to (74) above, and a VL region according to any one of (75) to (78) above.
In some embodiments the antigen-binding molecule of the present disclosure is capable of binding to BCMA and/or TACI. In some embodiments the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI. In some embodiments the antigen-binding molecule or antigen-binding domain comprises a polypeptide comprising, or consisting of, an amino acid sequence which is capable of binding to BCMA and/or TACI.
The ability of a given antigen-binding molecule/domain/polypeptide/amino acid sequence to bind to BCMA and/or TACI can be determined by analysis according to methods known in the art, such as by ELISA, Surface Plasmon Resonance (SPR; see e.g. Hearty et al., Methods Mol Biol (2012) 907:411-442), Bio-Layer Interferometry (see e.g. Lad et al., (2015) J Biomol Screen 20(4): 498-507), flow cytometry, or by a radiolabeled antigen-binding assay (RIA) enzyme-linked immunosorbent assay. Through such analysis binding to a given molecule can be measured and quantified. Such assays may involve evaluating binding to recombinant BCMA and/or recombinant TACI.
In some embodiments an antigen-binding molecule/domain/polypeptide/amino acid sequence capable of binding to BCMA and/or TACI binds to BCMA and/or TACI with greater affinity, and/or with greater duration than it binds to a protein other than BCMA and/or TACI. In some embodiments, the amino acid sequence which is capable of binding to BCMA and/or TACI is derived from the amino acid sequence of a ligand for BCMA and/or TACI. In some embodiments, the amino acid sequence which is capable of binding to BCMA and/or TACI is derived from the BCMA- and/or TACI-binding region of a ligand for BCMA and/or TACI. In some embodiments a BCMA- or TACI-binding amino acid sequence comprises or consists of a BCMA- or TACI-binding amino acid sequence derived from a ligand for BCMA and/or TACI (e.g. APRIL or BAFF).
In some embodiments, the amino acid sequence which is capable of binding to BCMA and/or TACI is derived from the amino acid sequence of APRIL. In some embodiments, amino acid sequence which is capable of binding to BCMA and/or TACI is derived from the amino acid sequence of BAFF.
As used herein, an amino acid sequence which is‘derived from’ a reference amino acid sequence comprises an amino acid sequence having at least 60%, e.g. one of at least 65%, 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% sequence identity to the reference amino acid sequence.
In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
In some embodiments the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI may further comprise one or more modifications (e.g.
substitutions/insertions/deletions to the amino acid sequence). The modifications may provide the amino acid sequence with desired functional and/or structural properties.
In some embodiments the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to increase binding to BCMA as compared to the binding displayed by the corresponding unmodified amino acid sequence. In some embodiments the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to increase binding to TACI as compared to the binding displayed by the corresponding unmodified amino acid sequence.
In some embodiments the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to decrease the level of BCMA-mediated signalling by a BCMA-expressing cell following binding of an antigen-binding molecule comprising the amino acid sequence as compared to the level of BCMA-mediated signalling by a BCMA-expressing cell following binding of an antigen-binding molecule comprising the corresponding unmodified amino acid sequence.
In some embodiments the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to decrease the level of TACI-mediated signalling by a TACI-expressing cell following binding of an antigen-binding molecule comprising the amino acid sequence as compared to the level of TACI-mediated signalling by a TACI-expressing cell following binding of an antigen-binding molecule comprising the corresponding unmodified amino acid sequence.
In some embodiments the amino acid sequence derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to decrease oligomerisation of the antigen-binding polypeptide with itself (i.e. homooligomerisation), or with naturally occurring or non-naturally occurring antigen-binding polypeptide(s) comprising the unmodified amino acid sequence (heterooligomerisation).
BCMA-mediated signalling can be analysed using BCMA-expressing cells e.g. in an assay for detecting and/or quantifying BCMA-mediated signalling. Similarly, TACI-mediated signalling can be analysed using TACI-expressing cells e.g. in an assay for detecting and/or quantifying TACI-mediated signalling. Suitable assays include e.g. NFKB reporter assays, and assays for detecting the
phosphorylation/activity/expression of factors which are phosphorylated/activated/expressed as a consequence of BCMA-mediated signalling or TACI-mediated signalling.
In some embodiments the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to decrease BCMA oligomerisation following binding of an antigen-binding molecule comprising the amino acid sequence as compared to the level of BCMA oligomerisation following binding of an antigen-binding molecule comprising the corresponding unmodified amino acid sequence. In some embodiments the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification to decrease TACI oligomerisation following binding of an antigen-binding molecule comprising the amino acid sequence as compared to the level of TACI oligomerisation following binding of an antigen-binding molecule comprising the corresponding unmodified amino acid sequence.
In some embodiments, the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification corresponding to one or more of the following modifications: D>A at the position corresponding to position 20 of SEQ ID NO:231 , insertion of‘GGS’ between the positions corresponding to positions 62 and 63 of SEQ ID NO:231 , M>A at the position corresponding to position 90 of SEQ ID NO:231 , R>A at the position corresponding to position 121 of SEQ ID NO:231.
In some embodiments, the amino acid sequence which is derived from the amino acid sequence of a ligand for BCMA and/or TACI comprises modification corresponding to one or more of the following modifications: R>A at the position corresponding to position 34 of SEQ ID NO:231 , Y>A at the position corresponding to position 56 of SEQ ID NO:231 , S>A at the position corresponding to position 103 of SEQ ID NO:231 , H>A at the position corresponding to position 108 of SEQ ID NO:231 , F>A at the position corresponding to position 134 of SEQ ID NO:231.
Where an amino acid sequence is described as comprising modification(s)“corresponding to” reference modification(s), equivalent modification(s) in homologous amino acid sequences are contemplated. That is, the modification(s) identified in the preceding paragraphs are contemplated in amino acid sequences having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231. Corresponding positions to those identified in the reference sequence (i.e. SEQ ID NO:231 ) can be identified by sequence alignment of the homologous sequence to SEQ ID NO:231 , which can be performed e.g. using sequence alignment software such as ClustalOmega (Soding, J. 2005, Bioinformatics 21 , 951-960).
In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising one or more (e.g. 2, 3, 4, 5, 6, 7, 8, 9 or 10) substitutions/insertions relative to the amino acid sequence of SEQ ID NO:231.
In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution D>A at the position corresponding to position 20 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising insertion of‘GGS’ between the positions corresponding to positions 62 and 63 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution M>A at the position corresponding to position 90 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution R>A at the position corresponding to position 121 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution D>A at the position corresponding to position 20 of SEQ ID NO:231 , and further comprising insertion of‘GGS’ between the positions corresponding to positions 62 and 63 of SEQ ID NO:231 , further comprising the substitution M>A at the position corresponding to position 90 of SEQ ID NO:231 , and further comprising the substitution R>A at the position corresponding to position 121 of SEQ ID NO:231 (that is, the amino acid sequence shown in SEQ ID NO:232).
In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution R>A at the position corresponding to position 34 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution Y>A at the position corresponding to position 56 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution S>A at the position corresponding to position 103 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution H>A at the position corresponding to position 108 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution F>A at the position corresponding to position 134 of SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:231 , further comprising the substitution R>A at the position corresponding to position 34 of SEQ ID NO:231 , further comprising the substitution Y>A at the position corresponding to position 56 of SEQ ID NO:231 , further comprising the substitution S>A at the position corresponding to position 103 of SEQ ID NO:231 , further comprising the substitution H>A at the position corresponding to position 108 of SEQ ID NO:231 , and further comprising the substitution F>A at the position corresponding to position 134 of SEQ ID NO:231 (that is, the amino acid sequence shown in SEQ ID NO:233).
In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:232, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:232. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:233, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:233.
In some embodiments the antigen-binding molecule comprises more than one an amino acid sequence which is capable of binding to BCMA and/or TACI. In some embodiments the antigen-binding molecule comprises one of 1 , 2, 3, 4, 5, 6, 7 or 8 non-overlapping amino acid sequences, which are each independently capable of binding to BCMA and/or TACI. In some embodiments antigen-binding molecule comprises a polypeptide comprising plural amino acid sequences capable of binding to BCMA and/or TACI provided in tandem.
In some embodiments the antigen-binding molecule comprises a polypeptide comprising non-overlapping sequences according to (i) and (ii):
(i) an amino acid sequence according to SEQ ID NO:232, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:232, and
(ii) an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
In some embodiments the antigen-binding molecule comprises a polypeptide comprising non-overlapping sequences according to (i) to (iii):
(i) an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
(ii) an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
(iii) an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231. In some embodiments the antigen-binding molecule comprises a polypeptide comprising non-overlapping sequences according to (i) to (iii):
(i) an amino acid sequence according to SEQ ID NO:232, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:232.
(ii) an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
(iii) an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
In some embodiments the antigen-binding molecule comprises a polypeptide comprising non-overlapping sequences according to (i) to (iii):
(i) an amino acid sequence according to SEQ ID NO:232, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:232.
(ii) an amino acid sequence according to SEQ ID NO:232, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:232.
(iii) an amino acid sequence according to SEQ ID NO:231 , or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:231.
In some embodiments plural amino acid sequences capable of binding to BCMA and/or TACI are joined via linker sequences, e.g. linker sequences as described herein. In some embodiments a linker sequence comprises or consists of glycine and serine residues. In some embodiments a linker sequence comprises 1 to 20 amino acids.
In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:234, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:234. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:235, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:235. In some embodiments the antigen-binding molecule comprises a polypeptide having an amino acid sequence according to SEQ ID NO:236, or an amino acid sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to SEQ ID NO:236. In some embodiments, the antigen-binding molecule is not a naturally-occurring peptide/polypeptide. In some embodiments, the antigen-binding molecule does not consist of the amino acid sequence shown in one of SEQ ID NOs: 153 to 173.
In aspects of the present invention, the antigen-binding molecule is capable of binding to CD47 and is capable of binding to BCMA. In aspects of the present invention, the antigen-binding molecule is capable of binding to CD47 and is capable of binding to TACI. In aspects of the present invention, the antigenbinding molecule is capable of binding to CD47 and is capable of binding to BCMA and TACI.
In some embodiments, the antigen-binding molecule comprises the CDRs of an antigen-binding molecule which is capable of binding to CD47 and the CDRs of an antigen-binding molecule which is capable of binding to BCMA and/or TACI. In some embodiments, the antigen-binding molecule comprises the FRs of an antigen-binding molecule which is capable of binding to CD47 and the FRs of an antigen-binding molecule which is capable of binding to BCMA and/or TACI. In some embodiments, the antigen-binding molecule comprises the CDRs and the FRs of an antigen-binding molecule which is capable of binding to CD47 and the CDRs and the FRs of an antigen-binding molecule which is capable of binding to BCMA and/or TACI. That is, in some embodiments the antigen-binding molecule comprises the VH region and the VL region of an antigen-binding molecule which is capable of binding to CD47 and the VH region and the VL region of an antigen-binding molecule which is capable of binding to BCMA and/or TACI.
In some embodiments the antigen-binding molecule comprises a VH region and a VL region which is, or which is derived from, the VH/VL region of a CD47-binding antibody clone described herein (i.e. anti- CD47 antibody clones 1-1-A1_BM, 1-1-A1 , 5-48-A6, 5-48-D2, 1 1A1 H1 , 1 1A1 H2, 1 1A1 H3, 1 1A1 H4, 1 1A1 H5, 1 1A1 H6, 1 1A1 H7, 1 1A1 H8, 1 1A1 H9, 1 1A1 H10 or 1 1 A1 H1 1 ) and a VH region and a VL region which is, or which is derived from, the VH/VL region of a BCMA and/or TACI-binding antibody clone described herein (i.e. anti-BCMA antibody clone J6M0).
In some embodiments the antigen-binding molecule comprises:
a CD47-binding region comprising a VH region according to any one of (1 ) to (35) above, and a VL region according to any one of (36) to (70) above; and
a BCMA-binding region comprising a VH region according to any one of (71 ) to (74) above, and a VL region according to any one of (75) to (78) above.
In some embodiments the antigen-binding molecule comprises:
a CD47-binding region comprising a VH region according to any one of (1 ) to (35) above, and a VL region according to any one of (36) to (70) above; and
a BCMA- and/or TACI-binding region comprising or consisting of (i) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of one of SEQ ID NOs:231 , 232, 233, 234, 235 or 236.
In embodiments in accordance with the present invention in which one or more amino acids are substituted with another amino acid, the substitutions may conservative substitutions, for example according to the following Table. In some embodiments, amino acids in the same block in the middle column are substituted. In some embodiments, amino acids in the same line in the rightmost column are substituted:
Figure imgf000043_0001
In some embodiments, substitution(s) may be functionally conservative. That is, in some embodiments the substitution may not affect (or may not substantially affect) one or more functional properties (e.g. target binding) of the antigen-binding molecule comprising the substitution as compared to the equivalent unsubstituted molecule.
The VH and VL region of an antigen-binding region of an antibody together constitute the Fv region. In some embodiments, the antigen-binding molecule according to the present invention comprises, or consists of, an Fv region which binds to CD47. In some embodiments, the antigen-binding molecule comprises an Fv region which binds to BCMA and/or TACI. In some embodiments, the antigen-binding molecule according to the present invention comprises, or consists of, an Fv region which binds to CD47 and an Fv region which binds to BCMA and/or TACI. In some embodiments the VH and VL regions of the Fv are provided as single polypeptide joined by a linker region, i.e. a single chain Fv (scFv).
In some embodiments the antigen-binding molecule of the present invention comprises one or more regions of an immunoglobulin heavy chain constant sequence. In some embodiments the immunoglobulin heavy chain constant sequence is, or is derived from, the heavy chain constant sequence of an IgG (e.g. lgG1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, IgE or IgM.
In some embodiments the immunoglobulin heavy chain constant sequence is human immunoglobulin G 1 constant (IGHG1 ; UniProt: P01857-1 , v1 ; SEQ ID NO:146). Positions 1 to 98 of SEQ ID NO:146 form the CH1 region (SEQ ID NO:147). Positions 99 to 110 of SEQ ID NO:146 form a hinge region between CH1 and CH2 regions (SEQ ID NO:148). Positions 111 to 223 of SEQ ID NO:146 form the CH2 region (SEQ ID NO:149). Positions 224 to 330 of SEQ ID NO:146 form the CH3 region (SEQ ID NO:150).
The exemplified antigen-binding molecules were prepared using pFUSE-CHIg-hG1 , which comprises the substitutions D356E, L358M (positions numbered according to EU numbering) in the CH3 region relative to SEQ ID NO:146. The amino acid sequence of the CH3 region encoded by pFUSE-CHIg-hG1 is shown in SEQ ID NO: 151. It will be appreciated that CH3 regions may be provided with further substitutions in accordance with modification to an Fc region of the antigen-binding molecule as described herein.
In some embodiments a CH1 region comprises or consists of the sequence of SEQ ID NO:147, or a sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%,
95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:147. In some embodiments a CH1-CH2 hinge region comprises or consists of the sequence of SEQ ID NO:148, or a sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:148. In some embodiments a CH2 region comprises or consists of the sequence of SEQ ID NO:149, or a sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:149. In some embodiments a CH3 region comprises or consists of the sequence of SEQ ID NO: 150 or 151 , or a sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 150 or 151.
In some embodiments the antigen-binding molecule comprises a sequence comprising a hinge region comprising the substitution C220S (numbered according to EU numbering). In some embodiments the antigen-binding molecule comprises the amino acid sequence of SEQ ID NO:268, or having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:268.
In some embodiments the antigen-binding molecule of the present invention comprises one or more regions of an immunoglobulin light chain constant sequence. In some embodiments the immunoglobulin light chain constant sequence is human immunoglobulin kappa constant (IGKC; CK; UniProt: P01834-1 , v2; SEQ ID NO: 152). In some embodiments the immunoglobulin light chain constant sequence is a human immunoglobulin lambda constant (IGLC; CA), e.g. IGLC1 , IGLC2, IGLC3, IGLC6 or IGLC7. In some embodiments a CL region comprises or consists of the sequence of SEQ ID NO: 152, or a sequence having at least 60%, preferably one of 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%,
95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:152.
The VL and light chain constant (CL) region, and the VH region and heavy chain constant 1 (CH1 ) region of an antigen-binding region of an antibody together constitute the Fab region. In some embodiments the antigen-binding molecule comprises a Fab region comprising a VH, a CH1 , a VL and a CL (e.g. CK or CA). In some embodiments the Fab region comprises a polypeptide comprising a VH and a CH1 (e.g. a VH-CH1 fusion polypeptide), and a polypeptide comprising a VL and a CL (e.g. a VL-CL fusion polypeptide). In some embodiments the Fab region comprises a polypeptide comprising a VH and a CL (e.g. a VH-CL fusion polypeptide) and a polypeptide comprising a VL and a CH (e.g. a VL-CH1 fusion polypeptide); that is, in some embodiments the Fab region is a CrossFab region. In some embodiments the VH, CH1 , VL and CL regions of the Fab or CrossFab are provided as single polypeptide joined by linker regions, i.e. as a single chain Fab (scFab) or a single chain CrossFab (scCrossFab).
In some embodiments, the antigen-binding molecule of the present invention comprises, or consists of, a Fab region which binds to CD47. In some embodiments, the antigen-binding molecule comprises a Fab region which binds to BCMA and/or TACI. In some embodiments, the antigen-binding molecule of the present invention comprises, or consists of, a Fab region which binds to CD47 and a Fab region which binds to BCMA and/or TACI. In some embodiments, the antigen-binding molecule described herein comprises, or consists of, a whole antibody which binds to CD47. In some embodiments, the antigen-binding molecule comprises a whole antibody which binds to a BCMA and/or TACI. In some embodiments, the antigen-binding molecule described herein comprises, or consists of, a whole antibody which binds to CD47 and a whole antibody which binds to a BCMA and/or TACI. As used herein,“whole antibody” refers to an antibody having a structure which is substantially similar to the structure of an immunoglobulin (Ig). Different kinds of immunoglobulins and their structures are described e.g. in Schroeder and Cavacini J Allergy Clin Immunol. (2010) 125(202): S41-S52, which is hereby incorporated by reference in its entirety.
Immunoglobulins of type G (i.e. IgG) are -150 kDa glycoproteins comprising two heavy chains and two light chains. From N- to C-terminus, the heavy chains comprise a VH followed by a heavy chain constant region comprising three constant domains (CH1 , CH2, and CH3), and similarly the light chain comprise a VL followed by a CL. Depending on the heavy chain, immunoglobulins may be classed as IgG (e.g. lgG1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, IgE, or IgM. The light chain may be kappa (K) or lambda (l).
In some embodiments, the antigen-binding molecule described herein comprises, or consists of, an IgG (e.g. lgG1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, IgE, or IgM which binds to CD47. In some embodiments, the antigen-binding molecule described herein comprises an IgG (e.g. lgG1 , lgG2, lgG3, lgG4), IgA (e.g. lgA1 , lgA2), IgD, IgE, or IgM which binds to BCMA and/or TACI.
In some embodiments the antigen-binding molecule comprises a ligand for BCMA and/or TACI, or a BCMA and/or TACI -binding fragment of a ligand for BCMA and/or TACI. In some embodiments the ligand for BCMA and/or TACI is BAFF. In some embodiments the ligand for BCMA and/or TACI is APRIL.
Human A proliferation-inducing ligand (APRIL; also known as TNFSF13) is the protein identified by UniProt 075888. Alternative splicing of mRNA encoded by the human TNFSF13 gene yields 6 isoforms: isoform alpha (UniProt: 075888-1 , v1 ; SEQ ID NO: 153); isoform beta (UniProt: 075888-2; SEQ ID NO:154), in which the amino acid sequence corresponding to positions 113 to 129 of SEQ ID NO:153 are substituted with“N”; isoform gamma (UniProt: 075888-3; SEQ ID NO: 155), which lacks the amino acid sequence corresponding to positions 247 to 249 of SEQ ID NO: 153; isoform 4 (UniProt: 075888-4; SEQ ID NO: 156), which lacks the amino acid sequence corresponding to positions 86 to 113 of SEQ ID NO: 153; isoform TWE-PRIL (UniProt: 043508-2; SEQ ID NO: 157); and isoform 5 (UniProt: 075888-5; SEQ ID NO:158), which lacks the amino acid sequence corresponding to positions 1 to 17 and 87 to 114 of SEQ ID NO:153.
APRIL is cleaved in the Golgi between positions 104-105 by a furin convertase to yield the mature, secreted form of the protein (Lopez-Fraga et al. (2001 ) EMBO Rep. 2: 945-951 ). The mature forms of the alpha, beta, gamma and TWE-PRIL isoforms are shown in SEQ ID NOs:159 to 162. APRIL assembles as a homotrimer which establishes contacts with monomeric BCMA and TACI receptors, resulting in receptor trimerisation and activation of the NF-kB pathway. In this specification“APRIL” refers to APRIL from any species and includes APRIL isoforms, fragments, variants or homologues from any species. In some embodiments, the APRIL is APRIL from a mammal (e.g. a primate (rhesus, cynomolgous, or human) and/or a rodent (e.g. rat or murine) APRIL). Isoforms, fragments, variants or homologues of APRIL may optionally be characterised as having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of an immature or mature APRIL isoform from a given species, e.g. human.
In some embodiments the APRIL, or the fragment of APRIL, comprises or consists of an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%,
97%, 98%, 99% or 100% amino acid sequence identity to one of SEQ ID NOs:153 to 162.
Human B cell activating factor (BAFF; also known as TNFSF13B and BLys) is the protein identified by UniProt Q9Y275. Alternative splicing of mRNA encoded by the human TNFSF13B gene yields 3 isoforms: isoform 1 (UniProt: Q9Y275-1 , v1 ; SEQ ID NO:163); isoform 2 (UniProt: Q9Y275-2; SEQ ID NO:164), which lacks the amino acid sequence corresponding to positions 142 to 160 of SEQ ID NO:163; and isoform 3 (UniProt: Q9Y275-3; SEQ ID NO:165), in which positions 162 to 164 of SEQ ID NO:163 are replaced with“FIY”, and which lacks the amino acid sequence corresponding to positions 165 to 285 of SEQ ID NO:163.
BAFF comprises an N-terminal cytoplasmic domain (SEQ ID NO:166), a transmembrane domain (SEQ ID NO:167) and an extracellular domain (SEQ ID NOs: 168 to 170), which is cleaved between the positions corresponding to positions 133 and 135 to yield a soluble form (SEQ ID NOs: 171 to 173).
In this specification“BAFF” refers to BAFF from any species and includes BAFF isoforms, fragments, variants or homologues from any species. In some embodiments, the BAFF is BAFF from a mammal (e.g. a primate (rhesus, cynomolgous, or human) and/or a rodent (e.g. rat or murine) BAFF). Isoforms, fragments, variants or homologues of BAFF may optionally be characterised as having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of an immature or mature BAFF isoform from a given species, e.g. human.
In some embodiments the BAFF, or the fragment of BAFF, comprises or consists of an amino acid sequence having at least 70%, preferably one of 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%,
97%, 98%, 99% or 100% amino acid sequence identity to one of SEQ ID NOs: 163 to 173.
BAFF and APRIL display binding to BCMA and TACI. In some embodiments the ligand for BCMA, or BCMA-binding fragment of a ligand for BCMA, is capable of binding to transmembrane activator and CAML interactor (TACI). In some embodiments the ligand for TACI, or TACI-binding fragment of a ligand for TACI, is capable of binding to BCMA. Aspects of the present invention relate to multispecific antigen-binding molecules. By“multispecific” it is meant that the antigen-binding molecule displays specific binding to more than one target. In some embodiments the antigen-binding molecule is a bispecific antigen-binding molecule. In some
embodiments the antigen-binding molecule comprises at least two different antigen-binding domains (i.e. at least two antigen-binding domains, e.g. comprising non-identical VHs and VLs).
In some embodiments the antigen-binding molecule binds to CD47 and BCMA and/or TACI, and so is at least bispecific. The term“bispecific” means that the antigen-binding molecule is able to bind specifically to at least two distinct antigenic determinants.
In some embodiments, the antigen-binding molecule capable of binding to BCMA is also capable of binding to TACI. In some embodiments, the antigen-binding molecule capable of binding to TACI is also capable of binding to BCMA.
In some embodiments the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA. In some embodiments the antigen-binding domain capable of binding to BCMA is also capable of binding to TACI. In some embodiments the antigen-binding molecule comprises an antigenbinding domain capable of binding to TACI. In some embodiments the antigen-binding domain capable of binding to TACI is also capable of binding to BCMA.
In some embodiments the antigen-binding molecule is cross-reactive for BCMA and TACI. In some embodiments the antigen-binding molecule comprises an antigen-binding domain which is cross-reactive for BCMA and TACI.
As used herein, a“cross-reactive” antigen-binding molecule/domain/polypeptide is capable of binding to the target antigens for which the antigen-binding molecule/domain is cross-reactive. For example, an antigen-binding molecule/domain/polypeptide which is cross-reactive for BCMA and TACI is capable of binding to BCMA, and is also capable of binding to TACI. Cross-reactive antigen-binding
molecules/domains/polypeptides may display specific binding to each of the target antigens.
In some embodiments the BCMA-binding region of the antigen-binding molecule/domain is capable of binding to TACI. In some embodiments the TACI-binding region of the antigen-binding molecule/domain is capable of binding to BCMA.
It will be appreciated that an antigen-binding molecule according to the present invention (e.g. a multispecific antigen-binding molecule) may comprise antigen-binding molecules capable of binding to the targets for which the antigen-binding molecule is specific. For example, an antigen-binding molecule which is capable of binding to CD47 and BCMA and/or TACI may comprise: (i) an antigen-binding molecule which is capable of binding to CD47, and (ii) an antigen-binding molecule which is capable of binding to BCMA and/or TACI. By way of illustration, Figure 2 of the present application, lower right provides a graphic representation of an antigen-binding molecule which is capable of binding to CD47 and BCMA, comprising (i) an antigen-binding molecule which is capable of binding to CD47, specifically a CD47-binding Fab, and (ii) an antigen-binding molecule which is capable of binding to BCMA, specifically a BCMA-binding scFv.
It will also be appreciated that an antigen-binding molecule according to the present invention (e.g. a multispecific antigen-binding molecule) may comprise antigen-binding polypeptides or antigen-binding polypeptide complexes capable of binding to the targets for which the antigen-binding molecule is specific. For example, Figure 2 of the present application, lower right provides a graphic representation of an antigen-binding molecule which is capable of binding to CD47 and BCMA, comprising (i) an antigenbinding polypeptide complex capable of binding to CD47, comprising a light chain polypeptide
(comprising the structure VL-CL) and a heavy chain polypeptide (comprising the structure VH-CH1-CH2- CH3), and (ii) an antigen-binding polypeptide capable of binding to BCMA (comprising the structure VL- VH-CH2-CH3).
In some embodiments, a component antigen-binding molecule of a larger antigen-binding molecule (e.g. a multispecific antigen-binding molecule) may be referred to e.g. as an“antigen-binding domain” or “antigen-binding region” of the larger antigen-binding molecule.
In some embodiments the antigen-binding molecule comprises an antigen-binding molecule capable of binding to CD47, and an antigen-binding molecule capable of binding to an antigen other than CD47. In some embodiments, the antigen other than CD47 is an immune cell surface molecule. In some embodiments, the antigen other than CD47 is a cancer cell antigen. In some embodiments the antigen other than CD47 is a receptor molecule, e.g. a cell surface receptor. In some embodiments the antigen other than CD47 is a cell signalling molecule, e.g. a cytokine, chemokine, interferon, interleukin or lymphokine. In some embodiments the antigen other than CD47 is a growth factor or a hormone.
A cancer cell antigen is an antigen which is expressed or over-expressed by a cancer cell. A cancer cell antigen may be any peptide/polypeptide, glycoprotein, lipoprotein, glycan, glycolipid, lipid, or fragment thereof. A cancer cell antigen’s expression may be associated with a cancer. A cancer cell antigen may be abnormally expressed by a cancer cell (e.g. the cancer cell antigen may be expressed with abnormal localisation), or may be expressed with an abnormal structure by a cancer cell. A cancer cell antigen may be capable of eliciting an immune response. In some embodiments, the antigen is expressed at the cell surface of the cancer cell (i.e. the cancer cell antigen is a cancer cell surface antigen). In some embodiments, the part of the antigen which is bound by the antigen-binding molecule described herein is displayed on the external surface of the cancer cell (i.e. is extracellular). The cancer cell antigen may be a cancer-associated antigen. In some embodiments the cancer cell antigen is an antigen whose expression is associated with the development, progression or severity of symptoms of a cancer. The cancer- associated antigen may be associated with the cause or pathology of the cancer, or may be expressed abnormally as a consequence of the cancer. In some embodiments, the cancer cell antigen is an antigen whose expression is upregulated (e.g. at the RNA and/or protein level) by cells of a cancer, e.g. as compared to the level of expression of by comparable non-cancerous cells (e.g. non-cancerous cells derived from the same tissue/cell type). In some embodiments, the cancer-associated antigen may be preferentially expressed by cancerous cells, and not expressed by comparable non-cancerous cells (e.g. non-cancerous cells derived from the same tissue/cell type). In some embodiments, the cancer- associated antigen may be the product of a mutated oncogene or mutated tumor suppressor gene. In some embodiments, the cancer-associated antigen may be the product of an overexpressed cellular protein, a cancer antigen produced by an oncogenic virus, an oncofetal antigen, or a cell surface glycolipid or glycoprotein.
An immune cell surface molecule may be any peptide/polypeptide, glycoprotein, lipoprotein, glycan, glycolipid, lipid, or fragment thereof expressed at or on the cell surface of an immune cell. In some embodiments, the part of the immune cell surface molecule which is bound by the antigen-binding molecule of the present invention is on the external surface of the immune cell (i.e. is extracellular). The immune cell surface molecule may be expressed at the cell surface of any immune cell. In some embodiments, the immune cell may be a cell of hematopoietic origin, e.g. a neutrophil, eosinophil, basophil, dendritic cell, lymphocyte, or monocyte. The lymphocyte may be e.g. a T cell, B cell, natural killer (NK) cell, NKT cell or innate lymphoid cell (ILC), or a precursor thereof (e.g. a thymocyte or pre-B cell).
In some embodiments the antigen other than CD47 is an antigen expressed by cells of a hematologic malignancy, a myeloid hematologic malignancy, a lymphoblastic hematologic malignancy,
myelodysplastic syndrome (MDS), acute myeloid leukemia (AML), chronic myeloid leukemia, acute lymphoblastic leukemia (ALL), non-Hodgkin’s lymphoma, multiple myeloma, bladder cancer or brain cancer.
In some embodiments the antigen other than CD47 is an antigen expressed by cells of AML, e.g. as described in Hoseini and Cheung Blood Cancer J. (2017) 7(2):e522, which is hereby incorporated by reference in its entirety. In some embodiments the antigen other than CD47 is selected from: BCMA, TACI, CD33, CD123, Wilms' tumor protein (WT1 ), CD13, CD15, CD30, CD45, C-type lectin-like molecule 1 (CLL1 ), Fms-like tyrosine kinase 3 (FLT-3), VEGF and angiopoietin-2 (Ang-2). In some embodiments the antigen other than CD47 is BCMA. In some embodiments the antigen other than CD47 is TACI.
Multispecific antigen-binding molecules described herein display at least monovalent binding with respect to CD47, and also display at least monovalent binding with respect to the antigen other than CD47. In some embodiments a multispecific antigen-binding molecule according to the present invention displays at least monovalent binding with respect to CD47, and also displays at least monovalent binding with respect to BCMA and/or TACI.
In some embodiments the antigen-binding molecule comprises an antigen-binding region (e.g. a polypeptide, Fv, Fab or antibody) capable of binding to CD47, and an antigen-binding region (e.g. a polypeptide, Fv, Fab or antibody) capable of binding to BCMA and/or TACI. In some embodiments the antigen-binding molecule comprises the VH and VL of an antibody capable of binding to CD47, and the VH and VL of an antibody capable of binding to BCMA and/or TACI. Binding valency refers to the number of binding sites in an antigen-binding molecule for a given antigenic determinant. For example, in the IgG 1 (1 +1 ) format described herein the bispecific anti-CD47/anti-BCMA antibody described herein (e.g. [6] of Example 2.2) is monovalent with respect to binding to CD47, and monovalent with respect to binding to BCMA.
Accordingly, in some embodiments the antigen-binding molecule comprises one binding site for CD47, and one binding site for BCMA and/or TACI.
Multispecific antigen-binding molecules according to the invention may be provided in any suitable format, such as those formats described in described in Brinkmann and Kontermann MAbs (2017) 9(2): 182-212, which is hereby incorporated by reference in its entirety. Suitable formats include those shown in Figure 2 of Brinkmann and Kontermann MAbs (2017) 9(2): 182-212: antibody conjugates, e.g. lgG2, F(ab’)2 or CovX-Body; IgG or IgG-like molecules, e.g. IgG, chimeric IgG, kl-body common HC; CH1/CL fusion proteins, e.g. scFv2-CH1/CL, VHH2-CH1/CL;‘variable domain only’ bispecific antigen-binding molecules, e.g. tandem scFv (taFV), triplebodies, diabodies (Db), dsDb, Db(kih), DART, scDB, dsFv-dsFv, tandAbs, triple heads, tandem dAb/VHH, tertravalent dAb.VHH; Non-lg fusion proteins, e.g. scFv2-albumin, scDb- albumin, taFv-albumin, taFv-toxin, miniantibody, DNL-Fab2, DNL-Fab2-scFv, DNL-Fab2-lgG-cytokine2, ImmTAC (TCR-scFv); modified Fc and CH3 fusion proteins, e.g. scFv-Fc(kih), scFv-Fc(CH3 charge pairs), scFv-Fc (EW-RVT), scFv-fc (HA-TF), scFv-Fc (SEEDbody), taFv-Fc(kih), scFv-Fc(kih)-Fv, Fab- Fc(kih)-scFv, Fab-scFv-Fc(kih), Fab-scFv-Fc(BEAT), Fab-scFv-Fc (SEEDbody), DART-Fc, scFv- CH3(kih), TriFabs; Fc fusions, e.g. Di-diabody, scDb-Fc, taFv-Fc, scFv-Fc-scFv, HCAb-VHH, Fab-scFv- Fc, scFv4-lg, scFv2-Fcab; CH3 fusions, e.g. Dia-diabody, scDb-CH3; IgE/lgM CH2 fusions, e.g. scFv- EHD2-scFv, scFvMHD2-scFv; Fab fusion proteins, e.g. Fab-scFv (bibody), Fab-scFv2 (tribody), Fab-Fv, Fab-dsFv, Fab-VHH, orthogonal Fab-Fab; non-lg fusion proteins, e.g. DNL-Fab3, DNL-Fab2-scFv, DNL- Fab2-lgG-cytokine2; asymmetric IgG or IgG-like molecules, e.g. IgG(kih), IgG(kih) common LC, ZW1 IgG common LC, Biclonics common LC, CrossMab, CrossMab(kih), scFab-lgG(kih), Fab-scFab-lgG(kih), orthogonal Fab IgG(kih), DuetMab, CH3 charge pairs + CH1/CL charge pairs, hinge/CH3 charge pairs, SEED-body, Duobody, four-in-one-CrossMab(kih), LUZ-Y common LC; LUZ-Y scFab-lgG, FcFc*;
appended and Fc-modified IgGs, e.g. lgG(kih)-Fv, IgG HA-TF-Fv, lgG(kih)scFab, scFab-Fc(kih)-scFv2, scFab-Fc(kih)-scFv, half DVD-lg, DVI-lg (four-in-one), CrossMab-Fab; modified Fc and CH3 fusion proteins, e.g. Fab-Fc(kih)-scFv, Fab-scFv-Fc(kih), Fab-scFv-Fc(BEAT), Fab-scFv-Fc-SEEDbody, TriFab; appended IgGs - HC fusions, e.g. IgG-HC, scFv, IgG-dAb, IgG-taFV, IgG-CrossFab, IgG-orthogonal Fab, lgG-(CaC ) Fab, scFv-HC-lgG, tandem Fab-lgG (orthogonal Fab) Fab-lgG(CaC Fab), Fab-lgG(CR3), Fab-hinge-lgG(CR3); appended IgGs - LC fusions, e.g. IgG-scFv(LC), scFv(LC)-lgG, dAb-lgG; appended IgGs - HC and LC fusions, e.g. DVD-lg, TVD-lg, CODV-lg, scFv4-lgG, Zybody; Fc fusions, e.g. Fab-scFv- Fc, scFv4-lg; F(ab’)2 fusions, e.g. F(ab’)2-scFv2; CH1/CL fusion proteins e.g. scFv2-CH1-hinge/CL;
modified IgGs, e.g. DAF (two-in one-lgG), DutaMab, Mab2; and non-lg fusions, e.g. DNL-Fab4-lgG.
The skilled person is able to design and prepare bispecific antigen-binding molecules. Methods for producing bispecific antigen-binding molecules include chemically crosslinking of antigen-binding molecules or antibody fragments, e.g. with reducible disulphide or non-reducible thioether bonds, for example as described in Segal and Bast, 2001. Production of Bispecific Antigen-binding molecules. Current Protocols in Immunology. 14:IV:2.13:2.13.1—2.13.16, which is hereby incorporated by reference in its entirety. For example, A/-succinimidyl-3-(-2-pyridyldithio)-propionate (SPDP) can be used to chemically crosslink e.g. Fab fragments via hinge region SH- groups, to create disulfide-linked bispecific F(ab)2 heterodimers.
Other methods for producing bispecific antigen-binding molecules include fusing antibody-producing hybridomas e.g. with polyethylene glycol, to produce a quadroma cell capable of secreting bispecific antibody, for example as described in D. M. and Bast, B. J. 2001. Production of Bispecific Antigen-binding molecules. Current Protocols in Immunology. 14: IV:2.13:2.13.1—2.13.16.
Bispecific antigen-binding molecules according to the present invention can also be produced recombinantly, by expression from e.g. a nucleic acid construct encoding polypeptides for the antigenbinding molecules, for example as described in Antibody Engineering: Methods and Protocols, Second Edition (Humana Press, 2012), at Chapter 40: Production of Bispecific Antigen-binding molecules:
Diabodies and Tandem scFv (Hornig and Farber-Schwarz), or French, How to make bispecific antigenbinding molecules, Methods Mol. Med. 2000; 40:333-339, the entire contents of both of which are hereby incorporated by reference.
For example, a DNA construct encoding the light and heavy chain variable domains for the two antigenbinding fragments (i.e. the light and heavy chain variable domains for the antigen-binding fragment capable of binding CD47, BCMA and/or TACI, and the light and heavy chain variable domains for the antigen-binding fragment capable of binding to another target protein), and including sequences encoding a suitable linker or dimerization domain between the antigen-binding fragments can be prepared by molecular cloning techniques. Recombinant bispecific antibody can thereafter be produced by expression (e.g. in vitro) of the construct in a suitable host cell (e.g. a mammalian host cell), and expressed recombinant bispecific antibody can then optionally be purified.
Fc regions
In some embodiments the antigen-binding molecules of the present invention comprise an Fc region.
An Fc region is composed of CH2 and CH3 regions from one polypeptide, and CH2 and CH3 regions from another polypeptide. The CH2 and CH3 regions from the two polypeptides together form the Fc region.
In some embodiments, the antigen-binding molecule of the present invention comprises an Fc region comprising modification in one or more of the CH2 and CH3 regions promoting association of the Fc region. Recombinant co-expression of constituent polypeptides of an antigen-binding molecule and subsequent association leads to several possible combinations. To improve the yield of the desired combinations of polypeptides in antigen-binding molecules in recombinant production, it is advantageous to introduce in the Fc regions modification(s) promoting association of the desired combination of heavy chain polypeptides. Modifications may promote e.g. hydrophobic and/or electrostatic interaction between CH2 and/or CH3 regions of different polypeptide chains. Suitable modifications are described e.g. in Ha et al., Front. Immnol (2016) 7:394, which is hereby incorporated by reference in its entirety.
In some embodiments the antigen antigen-binding molecule of the present invention comprises an Fc region comprising paired substitutions in the CH3 regions of the Fc region according to one of the following formats, as shown in Table 1 of Ha et al., Front. Immnol (2016) 7:394: KiH, KiHs-s, HA-TF, ZW1 , 7.8.60, DD-KK, EW-RVT, EW-RVTs-s, SEED or A107.
In some embodiments, the Fc region comprises the“knob-into-hole” or“KiH” modification, e.g. as described e.g. in US 7,695,936 and Carter, J Immunol Meth 248, 7-15 (2001 ). In such embodiments, one of the CH3 regions of the Fc region comprises a“knob” modification, and the other CH3 region comprises a“hole” modification. The“knob” and“hole” modifications are positioned within the respective CH3 regions so that the“knob” can be positioned in the“hole” in order to promote heterodimerisation (and inhibit homodimerisation) of the polypeptides and/or stabilise heterodimers. Knobs are constructed by substituting amino acids having small chains with those having larger side chains (e.g. tyrosine or tryptophan). Holes are created by substituting amino acids having large side chains with those having smaller side chains (e.g. alanine or threonine).
In some embodiments, one of the CH3 regions of the Fc region of the antigen-binding molecule of the present invention comprises the substitution (numbering of positions/substitutions in the Fc, CH2 and CH3 regions herein is according to the EU numbering system as described in Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, MD, 1991 ) T366W, and the other CH3 region of the Fc region comprises the substitution Y407V. In some embodiments, one of the CH3 regions of the Fc region of the antigen-binding molecule comprises the substitution T366W, and the other CH3 region of the Fc region comprises the substitutions T366S and L368A. In some embodiments, one of the CH3 regions of the Fc region of the antigen-binding molecule comprises the substitution T366W, and the other CH3 region of the Fc region comprises the substitutions Y407V, T366S and L368A.
In some embodiments, the Fc region comprises the“DD-KK” modification as described e.g. in WO 2014/131694 A1. In some embodiments, one of the CH3 regions comprises the substitutions K392D and K409D, and the other CH3 region of the Fc region comprises the substitutions E356K and D399K. The modifications promote electrostatic interaction between the CH3 regions.
In some embodiments, the antigen-binding molecule of the present invention comprises an Fc region modified as described in Labrijn et al., Proc Natl Acad Sci U S A. (2013) 1 10(13):5145-50, referred to as ‘Duobody’ format. In some embodiments one of the CH3 regions comprises the substitution K409R, and the other CH3 region of the Fc region comprises the substitution F405L.
In some embodiments, the antigen-binding molecule of the present invention comprises an Fc region comprising the“EEE-RRR” modification as described in Strop et al., J Mol Biol. (2012) 420(3):204-19. In some embodiments one of the CH3 regions comprises the substitutions D221 E, P228E and L368E, and the other CH3 region of the Fc region comprises the substitutions D221 R, P228R and K409R.
In some embodiments, the antigen-binding molecule comprises an Fc region comprising the“EW-RVT” modification described in Choi et al., Mol Cancer Ther (2013) 12(12):2748-59. In some embodiments one of the CH3 regions comprises the substitutions K360E and K409W, and the other CH3 region of the Fc region comprises the substitutions Q347R, D399V and F405T.
In some embodiments, one of the CH3 regions comprises the substitution S354C, and the other CH3 region of the Fc region comprises the substitution Y349C. Introduction of these cysteine residues results in formation of a disulphide bridge between the two CH3 regions of the Fc region, further stabilizing the heterodimer (Carter (2001 ), J Immunol Methods 248, 7-15).
In some embodiments, the Fc region comprises the“KiHs-s” modification. In some embodiments one of the CH3 regions comprises the substitutions T366W and S354C, and the other CH3 region of the Fc region comprises the substitutions T366S, L368A, Y407V and Y349C.
In some embodiments, the antigen-binding molecule of the present invention comprises an Fc region comprising the“SEED” modification as described in Davis et al., Protein Eng Des Sel (2010) 23(4): 195- 202, in which b-strand segments of human lgG1 CH3 and IgA CH3 are exchanged.
In some embodiments, one of the CH3 regions comprises the substitutions S364H and F405A, and the other CH3 region of the Fc region comprises the substitutions Y349T and T394F (see e.g. Moore et al., MAbs (201 1 ) 3(6):546-57).
In some embodiments, one of the CH3 regions comprises the substitutions T350V, L351 Y, F405A and Y407V, and the other CH3 region of the Fc region comprises the substitutions T350V, T366L, K392L and T394W (see e.g. Von Kreudenstein et al., MAbs (2013) 5(5):646-54).
In some embodiments, one of the CH3 regions comprises the substitutions K360D, D399M and Y407A, and the other CH3 region of the Fc region comprises the substitutions E345R, Q347R, T366V and K409V (see e.g. Leaver-Fay et al., Structure (2016) 24(4):641-51 ).
In some embodiments, one of the CH3 regions comprises the substitutions K370E and K409W, and the other CH3 region of the Fc region comprises the substitutions E357N, D399V and F405T (see e.g. Choi et al., PLoS One (2015) 10(12):e0145349).
Figure imgf000053_0001
The present invention also provides polypeptide constituents of antigen-binding molecules. The polypeptides may be provided in isolated or substantially purified form. The antigen-binding molecule of the present invention may be, or may comprise, a complex of polypeptides.
In the present specification where a polypeptide comprises more than one domain or region, it will be appreciated that the plural domains/regions are preferably present in the same polypeptide chain. That is, the polypeptide comprising more than one domain or region is a fusion polypeptide comprising the domains/regions.
In some embodiments a polypeptide according to the present invention comprises, or consists of, a VH as described herein. In some embodiments a polypeptide according to the present invention comprises, or consists of, a VL as described herein.
In some embodiments, the polypeptide additionally comprises one or more antibody heavy chain constant regions (CH). In some embodiments, the polypeptide additionally comprises one or more antibody light chain constant regions (CL). In some embodiments, the polypeptide comprises a CH1 , CH2 region and/or a CH3 region of an immunoglobulin (Ig).
In some embodiments the polypeptide comprises one or more regions of an immunoglobulin heavy chain constant sequence. In some embodiments the polypeptide comprises a CH1 region as described herein. In some embodiments the polypeptide comprises a CH1-CH2 hinge region as described herein. In some embodiments the polypeptide comprises a CH2 region as described herein. In some embodiments the polypeptide comprises a CH3 region as described herein.
In some embodiments the polypeptide comprises a CH3 region comprising any one of the following amino acid substitutions/combinations of amino acid substitutions (shown e.g. in Table 1 of Ha et al., Front. Immnol (2016) 7:394, incorporated by reference hereinabove): T366W; T366S, L368A and Y407V; T366W and S354C; T366S, L368A, Y407V and Y349C; S364H and F405A; Y349T and T394F; T350V, L351Y, F405A and Y407V; T350V, T366L, K392L and T394W; K360D, D399M and Y407A; E345R, Q347R, T366V and K409V; K409D and K392D; D399K and E356K; K360E and K409W; Q347R, D399V and F405T; K360E, K409W and Y349C; Q347R, D399V, F405T and S354C; K370E and K409W; and E357N, D399V and F405T.
In some embodiments the CH2 and/or CH3 regions of the polypeptide comprise one or more amino acid substitutions for promoting association of the polypeptide with another polypeptide comprising a CH2 and/or CH3 region.
In some embodiments the polypeptide comprises one or more regions of an immunoglobulin light chain constant sequence. In some embodiments the polypeptide comprises a CL region as described herein.
In some embodiments, the polypeptide according to the present invention comprises a structure from N- to C-terminus according to one of the following: (i) VH
(ii) VL
(iii) VH-CH1
(iv) VL-CL
(v) VL-CH1
(vi) VH-CL
(vii) VH-CH1-CH2-CH3
(viii) VL-CL-CH2-CH3
(ix) VL-CH1-CH2-CH3
(x) VH-CL-CH2-CH3
Also provided by the present invention are antigen-binding molecules composed of the polypeptides of the present invention. In some embodiments, the antigen-binding molecule of the present invention comprises one of the following combinations of polypeptides:
(A) VH + VL
(B) VH-CH1 + VL-CL
(C) VL-CH1 + VH-CL
(D) VH-CH 1 -CH2-CH3 + VL-CL
(E) VH-CL-CH2-CH3 + VL-CH1
(F) VL-CH1-CH2-CH3 + VH-CL
(G) VL-CL-CH2-CH3 + VH-CH 1
(H) VH-CH 1-CH2-CH3 + VL-CL-CH2-CH3
(I) VH-CL-CH2-CH3 + VL-CH1-CH2-CH3
In some embodiments the antigen-binding molecule comprises more than one of a polypeptide of the combinations shown in (A) to (I) above. By way of example, with reference to (D) above, in some embodiments the antigen-binding molecule comprises two polypeptides comprising the structure VH- CH 1-CH2-CH3, and two polypeptides comprising the structure VL-CL.
In some embodiments, the antigen-binding molecule of the present invention comprises one of the following combinations of polypeptides:
(J) VH (anti-CD47) + VL (anti-CD47)
(K) VH (anti-CD47)-CH1 + VL (anti-CD47)-CL
(L) VL (anti-CD47)-CH1 + VH (anti-CD47)-CL
(M) VH (anti-CD47)-CH 1 -CH2-CH3 + VL (anti-CD47)-CL
(N) VH (anti-CD47)-CL-CH2-CH3 + VL (anti-CD47)-CH1
(O) VL (anti-CD47)-CH 1 -CH2-CH3 + VH (anti-CD47)-CL
(P) VL (anti-CD47)-CL-CH2-CH3 + VH (anti-CD47)-CH1
(Q) VH (anti-CD47)-CH 1 -CH2-CH3 + VL (anti-CD47)-CL-CH2-CH3
(R) VH (anti-CD47)-CL-CH2-CH3 + VL (anti-CD47)-CH1-CH2-CH3 (S) VH(anti-CD47) + VL(anti-CD47) + VH(anti-BCMA) + VL(anti-BCMA)
(T) VH(anti-CD47)-CH 1 + VL(anti-CD47)-CL + VH(anti-BCMA)-CH 1 + VL(anti-BCMA)-CL
(U) VL(anti-CD47)-CH 1 + VH(anti-CD47)-CL+ VL(anti-BCMA)-CH 1 + VH(anti-BCMA)-CL
(V) VH(anti-CD47)-CH 1 -CH2-CH3 + VL(anti-CD47)-CL + VH(anti-BCMA)-CH1-CH2-CH3 + VL(anti-BCMA)-CL
(W) VH(anti-CD47)-CL-CH2-CH3 + VL(anti-CD47)-CH1 + VH(anti-BCMA)-CL-CH2-CH3 + VL(anti-BCMA)-CH 1
(X) VL(anti-CD47)-CH 1 -CH2-CH3 + VH(anti-CD47)-CL + VL(anti-BCMA)-CH1-CH2-CH3 + VH(anti-BCMA)-CL
(Y) VL(anti-CD47)-CL-CH2-CH3 + VH(anti-CD47)-CH1 + VL(anti-BCMA)-CL-CH2-CH3 + VH(anti-BCMA)-CH 1
(Z) VH(anti-CD47)-CH 1 -CH2-CH3 + VL(anti-CD47)-CL-CH2-CH3 + VH(anti-BCMA)-CH1-CH2- CH3 + VL(anti-BCMA)-CL-CH2-CH3
(AA) VH(anti-CD47)-CL-CH2-CH3 + VL(anti-CD47)-CH1-CH2-CH3 + VH(anti-BCMA)-CL-CH2- CH3 + VL(anti-BCMA)-CH 1 -CH2-CH3
Wherein:“VH(anti-CD47)” refers to the VH of an antigen-binding molecule capable of binding to CD47 as described herein, e.g. as defined in one of (1 ) to (35);“VL(anti-CD47)” refers to the VL of an antigenbinding molecule capable of binding to CD47 as described herein, e.g. as defined in one of (36) to (70); “VH(anti-BCMA)” refers to the VH of an antigen-binding molecule capable of binding to BCMA as described herein, e.g. as defined in one of (71 ) to (74); and“VL(anti-BCMA)” refers to the VL of an antigen-binding molecule capable of binding to BCMA as described herein, e.g. as defined in one of (75) to (78).
In some embodiments, the antigen-binding molecule of the present invention comprises one of the following combinations of polypeptides:
(BB) BCMA/TACI-binding polypeptide
(CC) VH(anti-CD47) + VL(anti-CD47) + BCMA/TACI-binding polypeptide
(DD) VH(anti-CD47)-CH 1 -CH2-CH3 + VL(anti-CD47)-CL + BCMA/TACI-binding polypeptide-
Hinge-CH2-CH3
Wherein:“VH(anti-CD47)” refers to the VH of an antigen-binding molecule capable of binding to CD47 as described herein, e.g. as defined in one of (1 ) to (35);“VL(anti-CD47)” refers to the VL of an antigenbinding molecule capable of binding to CD47 as described herein, e.g. as defined in one of (36) to (70); and“BCMA/TACI-binding polypeptide” refers to a polypeptide comprising, or consisting of, an amino acid sequence capable of binding to BCMA and/or TACI, e.g. as described herein.
In some embodiments the polypeptide comprises or consists of an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of one of SEQ ID NOs:23, 31 , 39, 44, 49, 57, 65, 73, 229, 230, 178, 179, 180, 181 , 182, 183, 184, 185, 186 or 187. In some embodiments the polypeptide comprises or consists of an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of one of SEQ ID NOs:231 , 232, 233, 234, 235 or 236.
In some embodiments the polypeptide comprises or consists of an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of one of SEQ ID NOs: 130, 131 , 132, 133, 134, 135, 136, 137, 141 , 142, 176, 177, 210, 21 1 , 212, 213, 214, 215, 216, 217, 218, 219 or 259.
In some embodiments the polypeptide comprises or consists of an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of one of SEQ ID NOs:243, 244, 245, 246, 247, 248, 249, 250, 251 , 252, 253, 254, 255, 256, 257 or 258.
Linkers and additional sequences
In some embodiments the antigen-binding molecules and polypeptides of the present invention comprise a hinge region. In some embodiments a hinge region is provided between a CH 1 region and a CH2 region. In some embodiments a hinge region is provided between a CL region and a CH2 region. In some embodiments the hinge region comprises, or consists of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 148.
In some embodiments the antigen-binding molecules and polypeptides of the present invention comprise one or more linker sequences between amino acid sequences. A linker sequence may be provided at one or both ends of one or more of a VH, VL, CH1-CH2 hinge region, CH2 region and a CH3 region of the antigen-binding molecule/polypeptide.
Linker sequences are known to the skilled person, and are described, for example in Chen et al., Adv Drug Deliv Rev (2013) 65(10): 1357-1369, which is hereby incorporated by reference in its entirety. In some embodiments, a linker sequence may be a flexible linker sequence. Flexible linker sequences allow for relative movement of the amino acid sequences which are linked by the linker sequence. Flexible linkers are known to the skilled person, and several are identified in Chen et al., Adv Drug Deliv Rev (2013) 65(10): 1357-1369. Flexible linker sequences often comprise high proportions of glycine and/or serine residues.
In some embodiments, the linker sequence comprises at least one glycine residue and/or at least one serine residue. In some embodiments the linker sequence consists of glycine and serine residues. In some embodiments, the linker sequence has a length of 1-2, 1-3, 1-4, 1-5, 1-10, 1-15, 1-20, 1-25, or 1-30 amino acids. The antigen-binding molecules and polypeptides of the present invention may additionally comprise further amino acids or sequences of amino acids. For example, the antigen-binding molecules and polypeptides may comprise amino acid sequence(s) to facilitate expression, folding, trafficking, processing, purification or detection of the antigen-binding molecule/polypeptide. For example, the antigen-binding molecule/polypeptide may comprise a sequence encoding a His, (e.g. 6XHis), Myc, GST, MBP, FLAG, HA, E, or Biotin tag, optionally at the N- or C- terminus of the antigen-binding
molecule/polypeptide. In some embodiments the antigen-binding molecule/polypeptide comprises a detectable moiety, e.g. a fluorescent, lunminescent, immuno-detectable, radio, chemical, nucleic acid or enzymatic label.
The antigen-binding molecules and polypeptides of the present invention may additionally comprise a signal peptide (also known as a leader sequence or signal sequence). Signal peptides normally consist of a sequence of 5-30 hydrophobic amino acids, which form a single alpha helix. Secreted proteins and proteins expressed at the cell surface often comprise signal peptides.
The signal peptide may be present at the N-terminus of the antigen-binding molecule/polypeptide, and may be present in the newly synthesised antigen-binding molecule/polypeptide. The signal peptide provides for efficient trafficking and secretion of the antigen-binding molecule/polypeptide. Signal peptides are often removed by cleavage, and thus are not comprised in the mature antigen-binding
molecule/polypeptide secreted from the cell expressing the antigen-binding molecule/polypeptide.
Signal peptides are known for many proteins, and are recorded in databases such as GenBank, UniProt, Swiss-Prot, TrEMBL, Protein Information Resource, Protein Data Bank, Ensembl, and InterPro, and/or can be identified/predicted e.g. using amino acid sequence analysis tools such as SignalP (Petersen et al., 201 1 Nature Methods 8: 785-786) or Signal-BLAST (Frank and Sippl, 2008 Bioinformatics 24: 2172- 2176).
In some embodiments, the signal peptide of the antigen-binding molecule/polypeptide of the present invention comprises, or consists of, an amino acid sequence having at least 80%, 85% 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% sequence identity to the amino acid sequence of one of SEQ ID NOs:81 to 86.
Labels and conjugates
In some embodiments the antigen-binding molecules of the present invention additionally comprise a detectable moiety.
In some embodiments the antigen-binding molecule comprises a detectable moiety, e.g. a fluorescent label, phosphorescent label, luminescent label, immuno-detectable label (e.g. an epitope tag), radiolabel, chemical, nucleic acid or enzymatic label. The antigen-binding molecule may be covalently or non- covalently labelled with the detectable moiety. Fluorescent labels include e.g. fluorescein, rhodamine, allophycocyanin, eosine and NDB, green fluorescent protein (GFP) chelates of rare earths such as europium (Eu), terbium (Tb) and samarium (Sm), tetramethyl rhodamine, Texas Red, 4-methyl umbelliferone, 7-amino-4-methyl coumarin, Cy3, and Cy5. Radiolabels include radioisotopes such as Iodine123, Iodine125, Iodine126, Iodine131 , Iodine133, Bromine77, Technetium"171, Indium111 , Indium113111, Gallium67, Gallium68, Ruthenium95, Ruthenium97, Ruthenium103, Ruthenium105, Mercury207, Mercury203, Rhenium"111, Rhenium101 , Rhenium105, Scandium47, Tellurium121111, Tellurium122111, Tellurium125111, Thulium165, Thuliuml167, Thulium168, Copper67, Fluorine18, Yttrium", Palladium100, Bismuth217 and Antimony211. Luminescent labels include as radioluminescent, chemiluminescent (e.g. acridinium ester, luminol, isoluminol) and bioluminescent labels. Immuno- detectable labels include haptens, peptides/polypeptides, antibodies, receptors and ligands such as biotin, avidin, streptavidin or digoxigenin. Nucleic acid labels include aptamers. Enzymatic labels include e.g. peroxidase, alkaline phosphatase, glucose oxidase, beta-galactosidase and luciferase.
In some embodiments the antigen-binding molecules of the present invention are conjugated to a chemical moiety. The chemical moiety may be a moiety for providing a therapeutic effect. Antibody-drug conjugates are reviewed e.g. in Parslow et al., Biomedicines. 2016 Sep; 4(3): 14. In some embodiments, the chemical moiety may be a drug moiety (e.g. a cytotoxic agent). In some embodiments, the drug moiety may be a chemotherapeutic agent. In some embodiments, the drug moiety is selected from calicheamicin, DM1 , DM4, monomethylauristatin E (MMAE), monomethylauristatin F (MMAF), SN-38, doxorubicin, duocarmycin, D6.5 and PBD.
Particular exemplary embodiments of the antigen-binding molecules
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 130; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 131.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 132; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 133.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 134; and (ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 135.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 136; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 137.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 140;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 139;
(iii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 141 ; and
(iv) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 142.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 131 ;
(iii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 177; and
(iv) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 139.
In some embodiments the antigen-binding molecule comprises, or consists of: (i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:210; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:211.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:212; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:213.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:213; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:211.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:214; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:211.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:215; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:211.
In some embodiments the antigen-binding molecule comprises, or consists of: (i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:214; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:216.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:215; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:216.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:214; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:217.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:215; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:217.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:215; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:218.
In some embodiments the antigen-binding molecule comprises, or consists of: (i) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:215; and
(ii) two polypeptides comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:219.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:243.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:244.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:245.
In some embodiments the antigen-binding molecule comprises, or consists of: (i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:246.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:247.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:248.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:249. In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:250.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:251.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:252.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and (ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:253.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:259;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:254.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:255.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:256.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176; (ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:257.
In some embodiments the antigen-binding molecule comprises, or consists of:
(i) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO: 176;
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:131 ; and
(ii) a polypeptide comprising, or consisting of, an amino acid sequence having at least 70%, preferably one of 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% amino acid sequence identity to the amino acid sequence of SEQ ID NO:258.
Functional properties of the antigen-binding molecules
The antigen-binding molecules described herein may be characterised by reference to certain functional properties. In some embodiments, the antigen-binding molecule described herein may possess one or more of the following properties:
binds to CD47;
binds to BCMA;
binds to TACI;
binds to CD47 and BCMA;
binds to CD47 and TACI;
binds to CD47-expressing cells;
binds to BCMA-expressing cells;
binds to TACI-expressing cells;
binds to cells expressing CD47 and BCMA;
binds to cells expressing CD47 and TACI;
binds to cells expressing CD47, BCMA and TACI;
binds preferentially to cells expressing CD47 and BCMA over cells expressing CD47 and not expressing BCMA;
binds preferentially to cells expressing CD47 and TACI over cells expressing CD47 and not expressing TACI;
inhibits interaction between CD47 and SIRPa;
inhibits interaction between BCMA and a ligand for BCMA (e.g. APRIL/BAFF);
inhibits interaction between TACI and a ligand for TACI (e.g. APRIL/BAFF);
inhibits SIRPa-mediated signalling;
inhibits BCMA-mediated signalling; inhibits TACI-mediated signalling;
increases phagocytosis of CD47-expressing cells by phagocytic cells (e.g. macrophages);
increases the number/proportion of cancer antigen-specific immune cells
does not cause substantial hemagglutination;
causes less hemagglutination as compared to a reference anti-CD47 antibody;
increases killing of cancer cells;
inhibits the development/progression of cancer.
The antigen-binding molecules and antigen-binding domains described herein preferably display specific binding to the relevant target antigen(s) (e.g. CD47, BCMA and/or TACI). As used herein,“specific binding” refers to binding which is selective for the antigen, and which can be discriminated from nonspecific binding to non-target antigen. An antigen-binding molecule/domain that specifically binds to a target molecule preferably binds the target with greater affinity, and/or with greater duration than it binds to other, non-target molecules.
The ability of a given polypeptide to bind specifically to a given molecule can be determined by analysis according to methods known in the art, such as by ELISA, Surface Plasmon Resonance (SPR; see e.g. Hearty et al., Methods Mol Biol (2012) 907:41 1-442), Bio-Layer Interferometry (see e.g. Lad et al., (2015)
J Biomol Screen 20(4): 498-507), flow cytometry, or by a radiolabeled antigen-binding assay (RIA) enzyme-linked immunosorbent assay. Through such analysis binding to a given molecule can be measured and quantified. In some embodiments, the binding may be the response detected in a given assay.
In some embodiments, the extent of binding of the antigen-binding molecule to an non-target molecule is less than about 10% of the binding of the antibody to the target molecule as measured, e.g. by ELISA, SPR, Bio-Layer Interferometry or by RIA. Alternatively, binding specificity may be reflected in terms of binding affinity where the antigen-binding molecule binds with a dissociation constant (KD) that is at least 0.1 order of magnitude (i.e. 0.1 x 10n, where n is an integer representing the order of magnitude) greater than the KD of the antigen-binding molecule towards a non-target molecule. This may optionally be one of at least 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1 .0, 1 .5, or 2.0.
In some embodiments, the antigen-binding molecule described herein binds to CD47 with a KD of 10 mM or less, preferably one of <5 pM, <2 pM, <1 pM, <500 nM, <100 nM, <75 nM, <50 nM, <40 nM, <30 nM, <20 nM, <15 nM, <12.5 nM, <10 nM, <9 nM, <8 nM, <7 nM, <6 nM, <5 nM, <4 nM <3 nM, <2 nM, <1 nM or <500 pM. In some embodiments, the antigen-binding molecule binds to CD47 with an affinity of KD = <10 nM, <9 nM, <8 nM, <7 nM or <6 nM, e.g. ~ 5 nM.
In some embodiments, the antigen-binding molecule binds to CD47 with an affinity of binding (e.g. as determined by ELISA) of EC50 = 100 pg/ml or less, preferably one of <90 pg/ml, <80 pg/ml, <70 pg/ml, <60 pg/ml, <50 pg/ml, <40 pg/ml, <30 pg/ml, <20 pg/ml, <10 pg/ml, <9 pg/ml, <8 pg/ml, <7 pg/ml, <6 pg/ml, <5 pg/ml, <4 pg/ml, <3 pg/ml, <2 pg/ml, <1.5 pg/ml, <1 pg/ml, <0.5 pg/ml, <0.25 pg/ml, or <0.1 pg/ml. In some embodiments, the antigen-binding molecule described herein binds to BCMA with a KD of 10 mM or less, preferably one of <5 mM, <2 mM, <1 pM, <500 nM, <100 nM, <75 nM, <50 nM, <40 nM, <30 nM, <20 nM, <15 nM, <12.5 nM, <10 nM, <9 nM, <8 nM, <7 nM, <6 nM, <5 nM, <4 nM <3 nM, <2 nM, <1 nM or <500 pM. In some embodiments, the antigen-binding molecule binds to BCMA with an affinity of KD = <10 nM, <9 nM, <8 nM, <7 nM or <6 nM, e.g.~ 5 nM. In some embodiments, the antigen-binding molecule binds to BCMA with an affinity of KD = <5 nM, <4 nM, <3 nM, <2 nM, <1 nM, e.g. -0.65 nM.
In some embodiments, the antigen-binding molecule binds to BCMA with an affinity of binding (e.g. as determined by ELISA) of EC50 = 100 pg/ml or less, preferably one of <90 pg/ml, <80 pg/ml, <70 pg/ml, <60 pg/ml, <50 pg/ml, <40 pg/ml, <30 pg/ml, <20 pg/ml, <10 pg/ml, <9 pg/ml, <8 pg/ml, <7 pg/ml, <6 pg/ml, <5 pg/ml, <4 pg/ml, <3 pg/ml, <2 pg/ml, <1.5 pg/ml, <1 pg/ml, <0.5 pg/ml, <0.25 pg/ml, or <0.1 pg/ml.
In some embodiments, the antigen-binding molecule described herein binds to TACI with a KD of 10 pM or less, preferably one of <5 pM, <2 pM, <1 pM, <500 nM, <100 nM, <75 nM, <50 nM, <40 nM, <30 nM, <20 nM, <15 nM, <12.5 nM, <10 nM, <9 nM, <8 nM, <7 nM, <6 nM, <5 nM, <4 nM <3 nM, <2 nM, <1 nM or <500 pM. In some embodiments, the antigen-binding molecule binds to TACI with an affinity of KD = £10 nM, <9 nM, <8 nM, <7 nM or <6 nM, e.g. - 5 nM.
In some embodiments, the antigen-binding molecule binds to TACI with an affinity of binding (e.g. as determined by ELISA) of EC50 = 100 pg/ml or less, preferably one of <90 pg/ml, <80 pg/ml, <70 pg/ml, <60 pg/ml, <50 pg/ml, <40 pg/ml, <30 pg/ml, <20 pg/ml, <10 pg/ml, <9 pg/ml, <8 pg/ml, <7 pg/ml, <6 pg/ml, <5 pg/ml, <4 pg/ml, <3 pg/ml, <2 pg/ml, <1.5 pg/ml, <1 pg/ml, <0.5 pg/ml, <0.25 pg/ml, or <0.1 pg/ml.
The antigen-binding molecules of the present invention may bind to a particular region of interest of the target antigen(s). The antigen-binding region of an antigen-binding molecule according to the present domain may bind to linear epitope of a target antigen (e.g. CD47, BCMA and/or TACI), consisting of a contiguous sequence of amino acids (i.e. an amino acid primary sequence). In some embodiments, the antigen-binding region molecule may bind to a conformational epitope of a target antigen (i.e. CD47, BCMA and/or TACI), consisting of a discontinuous sequence of amino acids of the amino acid sequence.
In some embodiments, the antigen-binding molecule of the present invention is capable of binding to CD47. In some embodiments, the antigen-binding molecule is capable of binding to CD47 in an extracellular region of CD47. In some embodiments, the antigen-binding molecule is capable of binding to CD47 in extracellular region 1 of CD47 (e.g. the region shown in SEQ ID NO: 10). In some embodiments, the antigen-binding molecule is capable of binding to the V-type Ig-like domain of CD47 (e.g. the region shown in SEQ ID NO:9).
In some embodiments the antigen-binding molecule is capable of binding to a polypeptide comprising or consisting of the amino acid sequence shown in SEQ ID NO: 10. In some embodiments the antigenbinding molecule is capable of binding to a polypeptide comprising or consisting of the amino acid sequence shown in SEQ ID NO:9. In some embodiments the antigen-binding molecule is capable of binding to a polypeptide comprising or consisting of the amino acid sequence shown in SEQ ID NO:9. In some embodiments the antigen-binding molecule is capable of binding to a peptide or polypeptide comprising or consisting of the amino acid sequence shown in SEQ ID NO:21. In some embodiments the antigen-binding molecule is capable of binding to a peptide or polypeptide comprising or consisting of the amino acid sequence shown in SEQ ID NO:22.
As used herein, a“peptide” refers to a chain of two or more amino acid monomers linked by peptide bonds. A peptide typically has a length in the region of about 2 to 50 amino acids. A“polypeptide” is a polymer chain of two or more peptides. Polypeptides typically have a length greater than about 50 amino acids.
The ability of an antigen-binding molecule to bind to a given peptide/polypeptide can be analysed by methods well known to the skilled person, including analysis by ELISA, immunoblot (e.g. western blot), immunoprecipitation, surface plasmon resonance and biolayer interferometry.
In some embodiments the antigen-binding molecule is capable of binding the same region of CD47, or an overlapping region of CD47, to the region of CD47 which is bound by an antibody comprising the VH and VL sequences of one of clones 1-1-A1_BM, 1-1-A1 , 5-48-A6, 5-48-D2, 11A1 H1 , 11A1 H2, 11A1 H3, 11A1 H4, 11A1 H5, 1 1A1 H6, 11A1 H7, 11A1 H8, 11A1 H9, 1 1A1 H10 or 1 1A1 H11.
The region of a peptide/polypeptide to which an antibody binds can be determined by the skilled person using various methods well known in the art, including X-ray co-crystallography analysis of antibody- antigen complexes, peptide scanning, mutagenesis mapping, hydrogen-deuterium exchange analysis by mass spectrometry, phage display, competition ELISA and proteolysis-based‘protection’ methods. Such methods are described, for example, in Gershoni et al., BioDrugs, 2007, 21 (3): 145-156, which is hereby incorporated by reference in its entirety.
In some embodiments, the antigen-binding molecule of the present invention is capable of binding to BCMA. In some embodiments, the antigen-binding molecule is capable of binding to BCMA in the extracellular domain of BCMA (e.g. the region shown in SEQ ID NO:97). In some embodiments, the antigen-binding molecule binds to BCMA in the region bound by J6M0, which is described e.g. in WO 2012/163805 A1 (hereby incorporated by reference in its entirety).
In some embodiments, the antigen-binding molecule of the present invention is capable of binding to TACI. In some embodiments, the antigen-binding molecule is capable of binding to TACI in the extracellular domain of TACI (e.g. the region shown in SEQ ID NO:263).
In some embodiments, the antigen-binding molecule binds to BCMA in the region bound by APRIL. In some embodiments, the antigen-binding molecule binds to TACI in the region bound by APRIL. In some embodiments, the antigen-binding molecule binds to BCMA in the region bound by a polypeptide comprising or consisting of the sequence shown in SEQ ID NO:231 , 232 or 233. In some embodiments, the antigen-binding molecule binds to TACI in the region bound by a polypeptide comprising or consisting of the sequence shown in SEQ ID NO:231 , 232 or 233. In some embodiments, the antigen-binding molecule binds to BCMA in the region bound by a polypeptide comprising or consisting of the sequence shown in SEQ ID NO:231. In some embodiments, the antigen-binding molecule binds to TACI in the region bound by a polypeptide comprising or consisting of the sequence shown in SEQ ID NO:231.
In some embodiments the antigen-binding molecule described herein is capable of binding to CD47 and BCMA. In some embodiments the antigen-binding molecule described herein is capable of binding to CD47 and TACI. In some embodiments the antigen-binding molecule is capable of simultaneously binding to CD47 and BCMA. In some embodiments the antigen-binding molecule is capable of simultaneously binding to CD47 and TACI.
In some embodiments the antigen-binding molecule of the present invention displays cross-reactivity with CD47, BCMA and/or TACI of a non-human primate. That is, in some embodiments the antigen-binding molecule binds to both human CD47 and CD47 from a non-human primate. In some embodiments the antigen-binding molecule binds to both human BCMA and BCMA from a non-human primate. In some embodiments the antigen-binding molecule binds to both human TACI and TACI from a non-human primate. In some embodiments the non-human primate is rhesus macaque ( Macaca mulatta).
In some embodiments the antigen-binding molecule of the present invention binds to CD47 in a region which is accessible to an antigen-binding molecule (i.e., an extracellular antigen-binding molecule) when CD47 is expressed at the cell surface (i.e. in or at the cell membrane). In some embodiments the antigenbinding molecule is capable of binding to CD47 expressed at the cell surface of a cell expressing CD47.
In some embodiments the antigen-binding molecule is capable of binding to CD47-expressing cells (e.g. myeloid cells, myeloid leukemia cells, HL-60 cells, HMC-1 cells, HEL cells or Raji cells).
In some embodiments the antigen-binding molecule of the present invention binds to BCMA in a region which is accessible to an antigen-binding molecule (i.e., an extracellular antigen-binding molecule) when BCMA is expressed at the cell surface (i.e. in or at the cell membrane). In some embodiments the antigen-binding molecule is capable of binding to BCMA expressed at the cell surface of a cell expressing BCMA. In some embodiments the antigen-binding molecule is capable of binding to BCMA-expressing cells (e.g. plasma B cells, multiple myeloma cells (e.g. U-266/70 cells, U-266/84 cells, RPMI-8226 cells, MM.1 S cells, NCI-H929 cells or Karpas-707 cells), Burkitt lymphoma cells (e.g. Daudi cells, BL36 cells or Raji cells) or lymphocytic leukemia cells (e.g. REH cells)).
In some embodiments the antigen-binding molecule of the present invention binds to TACI in a region which is accessible to an antigen-binding molecule (i.e., an extracellular antigen-binding molecule) when TACI is expressed at the cell surface (i.e. in or at the cell membrane). In some embodiments the antigenbinding molecule is capable of binding to TACI expressed at the cell surface of a cell expressing TACI. In some embodiments the antigen-binding molecule is capable of binding to TACI-expressing cells (e.g. plasma B cells, multiple myeloma cells (e.g. U-266/70 cells, U-266/84 cells, RPMI-8226 cells, MM.1 S cells, NCI-H929 cells or Karpas-707 cells), Burkitt lymphoma cells (e.g. Daudi cells, BL36 cells or Raji cells) or lymphocytic leukemia cells (e.g. REH cells)).
The ability of an antigen-binding molecule to bind to a given cell type can be analysed by contacting cells with the antigen-binding molecule, and detecting antigen-binding molecule bound to the cells, e.g. after a washing step to remove unbound antigen-binding molecule. The ability of an antigen-binding molecule to bind to immune cell surface molecule-expressing cells and/or cancer cell antigen-expressing cells can be analysed by methods such as flow cytometry and immunofluorescence microscopy.
In some embodiments the antigen-binding molecule described herein is capable of binding to cells expressing CD47 and cells expressing BCMA. In some embodiments the antigen-binding molecule is capable of simultaneously binding to cells expressing CD47 and cells expressing BCMA. In some embodiments the antigen-binding molecule is capable of binding to CD47 and BCMA expressed by the same cell. In some embodiments the antigen-binding molecule is capable of binding to cells CD47 and BCMA expressed by different cells.
In some embodiments the antigen-binding molecule described herein is capable of binding to cells expressing CD47 and cells expressing TACI. In some embodiments the antigen-binding molecule is capable of simultaneously binding to cells expressing CD47 and cells expressing TACI. In some embodiments the antigen-binding molecule is capable of binding to CD47 and TACI expressed by the same cell. In some embodiments the antigen-binding molecule is capable of binding to cells CD47 and TACI expressed by different cells.
In some embodiments the antigen-binding molecule preferentially binds to cells expressing CD47 and BCMA (i.e. CD47+BCMA+ cells, e.g. multiple myeloma cells, Raji cells) over cells expressing CD47 and not expressing BCMA (i.e. CD47+BCMA- cells, e.g. HEK293T cells), and/or cells expressing BCMA and not expressing CD47 (i.e. CD47-BCMA+ cells). The ability of an antigen-binding molecule to preferentially bind to CD47+BCMA+ cells over CD47+BCMA- cells and/or CD47-BCMA+ cells can be determined by analysis of binding of the antigen-binding molecule to CD47+BCMA+ cells and CD47+BCMA- cells and/or CD47-BCMA+ cells, e.g. by flow cytometry. An antigen-binding molecule which preferentially binds to CD47+BCMA+ cells over CD47+BCMA- cells and/or CD47-BCMA+ can be determined by detection of an increased level of staining of CD47+BCMA+ cells by the antigen-binding molecule as compared to the level of staining of staining of CD47+BCMA- cells and/or CD47-BCMA+ cells by the antigen-binding molecule.
In some embodiments the antigen-binding molecule preferentially binds to cells expressing CD47 and TACI (i.e. CD47+TACI+ cells, e.g. multiple myeloma cells, Raji cells) over cells expressing CD47 and not expressing TACI (i.e. CD47+TACI- cells, e.g. HEK293T cells), and/or cells expressing TACI and not expressing CD47 (i.e. CD47-TACI+ cells). The ability of an antigen-binding molecule to preferentially bind to CD47+TACI+ cells over CD47+TACI- cells and/or CD47-TACI+ cells can be determined by analysis of binding of the antigen-binding molecule to CD47+TACI+ cells and CD47+TACI- cells and/or CD47-TACI+ cells, e.g. by flow cytometry. An antigen-binding molecule which preferentially binds to CD47+TACI+ cells over CD47+TACI- cells and/or CD47-TACI+ can be determined by detection of an increased level of staining of CD47+TACI+ cells by the antigen-binding molecule as compared to the level of staining of staining of CD47+TACI- cells and/or CD47-TACI+ cells by the antigen-binding molecule.
The antigen-binding molecule of the present invention may be an antagonist of CD47, BCMA and/or TACI. In some embodiments, the antigen-binding molecule is capable of inhibiting a function or process (e.g. interaction, signalling or other activity) mediated by CD47, BCMA and/or TACI. Herein,‘inhibition’ refers to a reduction, decrease or lessening relative to a control condition.
In some embodiments the antigen-binding molecule of the present invention is capable of inhibiting interaction between CD47 and a ligand for CD47. In some embodiments the antigen-binding molecule of the present invention is capable of inhibiting interaction between CD47 and SIRPa.
In some embodiments the antigen-binding molecule of the present invention is capable of inhibiting interaction between BCMA and a ligand for BCMA. In some embodiments the antigen-binding molecule of the present invention is capable of inhibiting interaction between BCMA and APRIL. In some
embodiments the antigen-binding molecule of the present invention is capable of inhibiting interaction between BCMA and BAFF.
In some embodiments the antigen-binding molecule of the present invention is capable of inhibiting interaction between TACI and a ligand for TACI. In some embodiments the antigen-binding molecule of the present invention is capable of inhibiting interaction between TACI and APRIL. In some embodiments the antigen-binding molecule of the present invention is capable of inhibiting interaction between TACI and BAFF.
The ability of an antigen-binding molecule to inhibit interaction between two factors can be determined for example by analysis of interaction in the presence of, or following incubation of one or both of the interaction partners with, the antibody/fragment. An example of a suitable assay to determine whether a given antigen-binding molecule is capable of inhibiting interaction between two interaction partners is a competition ELISA assay.
An antigen-binding molecule which is capable of inhibiting a given interaction (e.g. between CD47 and SIRPa, or between BCMA and APRIL, or between TACI and APRIL) is identified by the observation of a reduction/decrease in the level of interaction between the interaction partners in the presence of - or following incubation of one or both of the interaction partners with - the antigen-binding molecule, as compared to the level of interaction in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule). Suitable analysis can be performed in vitro, e.g. using recombinant interaction partners or using cells expressing the interaction partners. Cells expressing interaction partners may do so endogenously, or may do so from nucleic acid introduced into the cell. For the purposes of such assays, one or both of the interaction partners and/or the antigen-binding molecule may be labelled or used in conjunction with a detectable entity for the purposes of detecting and/or measuring the level of interaction. The ability of an antigen-binding molecule to inhibit interaction between two binding partners can also be determined by analysis of the downstream functional consequences of such interaction.
For example, downstream functional consequences of interaction between CD47 and SIRPa may include SIRPa-mediated signalling. For example, the ability of an antigen-binding molecule to inhibit interaction of CD47 and SIRPa may be determined by analysis of SIRPa ITIM phosphorylation, or analysis of phagocytosis of CD47-expressing cell by a SIRPa-expressing cell.
For example, downstream functional consequences of interaction between BCMA and APRIL/BAFF may include BCMA-mediated signalling, and downstream functional consequences of interaction between TACI and APRIL/BAFF may include TACI-mediated signalling.
In some embodiments, the antigen-binding molecule of the present invention is capable of inhibiting interaction between CD47 and SIRPa to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of interaction between CD47 and SIRPa in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule).
In some embodiments, the antigen-binding molecule inhibits interaction between CD47 and SIRPa with determined by ELISA) of 100 pg/ml or less, preferably one of <90 pg/ml, <80 pg/ml, <70 l, <50 pg/ml, <40 pg/ml, <30 pg/ml, <20 pg/ml, <10 pg/ml, <9 pg/ml, <8 pg/ml, <7 pg/ml, ml, <4 pg/ml, <3 pg/ml, <2 pg/ml, <1.5 pg/ml, <1 pg/ml, <0.5 pg/ml, <0.25 pg/ml, or <0.1
Figure imgf000074_0001
In some embodiments, the antigen-binding molecule of the present invention is capable of inhibiting interaction between BCMA and APRIL to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of interaction between BCMA and APRIL in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule).
In some embodiments, the antigen-binding molecule of the present invention is capable of inhibiting interaction between TACI and APRIL to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times,
<0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of interaction between TACI and APRIL in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule).
In some embodiments, the antigen-binding molecule of the present invention is capable of inhibiting interaction between BCMA and BAFF to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of interaction between BCMA and BAFF in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule).
In some embodiments, the antigen-binding molecule of the present invention is capable of inhibiting interaction between TACI and BAFF to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of interaction between TACI and BAFF in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule).
In some embodiments the antigen-binding molecule inhibits SIRPa-mediated signalling. SIRPa-mediated signalling can be analysed using SIRPoexpressing cells e.g. using an assay for detecting and/or quantifying SIRPa ITIM phosphorylation, or using in vitro assay of phagocytosis of CD47-expressing cells (e.g. Raji cells) by SIRPoexpressing cells (e.g. macrophages). For example, an in vitro assay of phagocytosis of CD47-expressing cells by SIRPoexpressing cells may be performed as described in Feng et al., Proc Natl Acad Sci U S A. (2015) 1 12(7): 2145-2150 (hereby incorporated by reference in its entirety), or as described in the experimental examples herein.
In some embodiments, the antigen-binding molecule of the present invention is capable of inhibiting SIRPomediated signalling to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of SIRPa-mediated signalling in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule).
In some embodiments the antigen-binding molecule inhibits BCMA-mediated signalling. BCMA-mediated signalling can be analysed using BCMA-expressing cells e.g. using an assay for detecting and/or quantifying BCMA-mediated signalling. In some embodiments the antigen-binding molecule inhibits TACI- mediated signalling. TACI -mediated signalling can be analysed using TACI-expressing cells e.g. using an assay for detecting and/or quantifying TACI-mediated signalling. Suitable assays for investigating BCMA-mediated signalling and TACI-mediated signalling include e.g. NFKB reporter assays, and assays for detecting the phosphorylation/activity/expression of factors which are
phosphorylated/activated/expressed as a consequence of BCMA-mediated signalling or TACI-mediated signalling. Such assays may comprise contacting BCMA and/or TACI-expressing cells with an antigenbinding molecule according to the present invention, e.g. in the presence of APRIL or BAFF.
In some embodiments, the antigen-binding molecule of the present invention is capable of inhibiting BCMA-mediated signalling to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of BCMA-mediated signalling in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule).
In some embodiments, the antigen-binding molecule of the present invention is capable of inhibiting TACI-mediated signalling to less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times,
<0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of TACI-mediated signalling in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule).
In some embodiments, the antigen-binding molecule of the present invention is capable of increasing phagocytosis of CD47-expressing cells. In some embodiments, the antigen-binding molecule of the present invention is capable of increasing phagocytosis of CD47-expressing cells (e.g. Raji cells) by SIRPoexpressing cells (e.g. macrophages).
An antigen-binding molecule which is capable of increasing phagocytosis of CD47-expressing cells by SIRPoexpressing cells is identified by the observation of an increased level of phagocytosis of the CD47- expressing cells by the SIRPoexpressing cells in the presence of - or following incubation of the CD47- expressing cells with - the antigen-binding molecule, as compared to the level of phagocytosis detected in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigenbinding molecule).
In some embodiments, the antigen-binding molecule of the present invention is capable of increasing phagocytosis of CD47-expressing cells (e.g. Raji cells) by SIRPoexpressing cells (e.g. macrophages) to more than 1 times, e.g. >1.01 times, >1.02 times, >1.03 times, >1.04 times, >1.05 times, >1.1 times, >1.2 times, >1.3 times, >1.4 times, >1.5 times, >1.6 times, >1.7 times, >1.8 times, >1.9 times, >2 times, >3 times, >4 times, >5 times, >6 times, >7 times, >8 times, >9 times or >10 times the level phagocytosis of the CD47-expressing cells by the SIRPoexpressing cells in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule).
In some embodiments, the antigen-binding molecule of the present invention is capable of increasing the number/proportion of cancer antigen-specific immune cells (e.g. CD8+ T cells or CD8+ CTLs) relative to a negative control condition, e.g. in an appropriate in vitro assay, or in vivo. Tseng et al., Proc Natl Acad Sci U S A. (2013) 110(27): 11 103-11108 (hereby incorporated by reference in its entirety) demonstrated that increased phagocytosis of CD47-expressing cancer cells by macrophages in the presence of an anti- CD47 antibody was associated with increased priming of cancer antigen-specific CD8+ T cells. Antigenbinding molecules capable of causing an increase in the number/proportion of cancer antigen-specific immune cells can be identified using a T cell priming assay e.g. as described in Tseng et al., Proc Natl Acad Sci U S A. (2013) 1 10(27): 11 103-11108. In some embodiments, the antigen-binding molecule of the present invention does not cause substantial hemagglutination (e.g. at concentrations of up to 400 pg/ml). Hemagglutination refers to agglutination of red blood cells (erythrocytes).
An agent which causes hemagglutination may be referred to as a hemagglutinin. In some embodiments the antigen-binding molecule of the present invention is not a hemagglutinin.
The ability of an antibody to cause hemagglutination can be analysed e.g. using an in vitro
hemagglutination assay. A suitable assay of hemagglutination for the purposes of such analysis is described e.g. in Example 5 of WO 2013/1 19714 A1 (hereby incorporated by reference in its entirety), or the assay of hemagglutination described in the experimental examples herein.“Substantial”
hemagglutination may be a level of hemagglutination which is more than 2 times, e.g. more than 3, 4, 5,
6, 7, 8, 9 or 10 times the level of hemagglutination detected in the absence of the antigen-binding molecule (or in the presence of an appropriate control antigen-binding molecule which does not cause hemagglutination).
In some embodiments, the antigen-binding molecule of the present invention causes less
hemagglutination as compared to a reference anti-CD47 antibody (e.g. a prior art anti-CD47 antibody). In some embodiments, the antigen-binding molecule of the present invention causes less than 1 times, e.g. <0.99 times, <0.95 times, <0.9 times, <0.85 times, <0.8 times, <0.75 times, <0.7 times, <0.65 times, <0.6 times, <0.55 times, <0.5 times, <0.45 times, <0.4 times, <0.35 times, <0.3 times, <0.25 times, <0.2 times, <0.15 times, <0.1 times, <0.05 times, or <0.01 times the level of hemagglutination as compared to a reference anti-CD47 antibody (e.g. a prior art anti-CD47 antibody), e.g. as determined using an in vitro assay of hemagglutination.
In some embodiments the antigen-binding molecule of the present invention increases killing of cancer cells. In some embodiments the antigen-binding molecule of the present invention causes a reduction in the number of cancer cells in vivo, e.g. as compared to an appropriate control condition. The cancer may be a cancer expressing CD47, BCMA and/or TACI, or may comprise cells expressing CD47, BCMA and/or TACI (e.g. the CD47+BCMA+TACI+ Burkit Lymphoma Raji cell line). The antigen-binding molecule of the present invention may be analysed for anticancer activity in an appropriate in vivo model, e.g. a Raji cell line-derived xenograft model.
In some embodiments the antigen-binding molecule of the present invention causes a greater reduction of the number of cancer cells in vivo in a Raji cell line-derived xenograft model as compared to a reference anti-CD47 antibody (e.g. a prior art anti-CD47 antibody).
In some embodiments, administration of an antigen-binding molecule according to the present invention may cause one or more of: inhibition of the development/progression of the cancer, a delay to/prevention of onset of the cancer, a reduction in/delay to/prevention of tumor growth, a reduction in/delay to/prevention of metastasis, a reduction in the severity of the symptoms of the cancer, a reduction in the number of cancer cells, a reduction in tumour size/volume, and/or an increase in survival (e.g.
progression free survival), e.g. as determined in an AML cell line-derived xenograft model.
It will be appreciated that the bispecific anti-CD47, BCMA and/or TACI-binding antigen-binding molecules described herein in particular are provided with combinations of advantageous properties in connection with their therapeutic use for the treatment of hematologic malignancies. For example, the anti-CD47, anti-BCMA antigen-binding molecule characterised in the experimental examples is shown to inhibit tumour growth in a NOD/SCID mouse CDX Raji cell model at a dose of 10 mg/kg, and to cause substantially no hemagglutination at concentrations as high as 200 pg/ml.
Chimeric antigen receptors (CARs)
The present invention also provides Chimeric Antigen Receptors (CARs) comprising the antigen-binding polypeptides or polypeptides of the present invention.
CARs are recombinant receptors that provide both antigen-binding and T cell activating functions. CAR structure and engineering is reviewed, for example, in Dotti et al., Immunol Rev (2014) 257(1 ), hereby incorporated by reference in its entirety. CARs comprise an antigen-binding region linked to a cell membrane anchor region and a signalling region. An optional hinge region may provide separation between the antigen-binding region and cell membrane anchor region, and may act as a flexible linker.
The CAR of the present invention comprises an antigen-binding region which comprises or consists of the antigen-binding molecule of the present invention, or which comprises or consists of a polypeptide according to the invention.
The cell membrane anchor region is provided between the antigen-binding region and the signalling region of the CAR and provides for anchoring the CAR to the cell membrane of a cell expressing a CAR, with the antigen-binding region in the extracellular space, and signalling region inside the cell. In some embodiments, the CAR comprises a cell membrane anchor region comprising or consisting of an amino acid sequence which comprises, consists of, or is derived from, the transmembrane region amino acid sequence for one of CDS-z, CD4, CD8 or CD28. As used herein, a region which is‘derived from’ a reference amino acid sequence comprises an amino acid sequence having at least 60%, e.g. one of at least 65%, 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% sequence identity to the reference sequence.
The signalling region of a CAR allows for activation of the T cell. The CAR signalling regions may comprise the amino acid sequence of the intracellular domain of CDS-z, which provides immunoreceptor tyrosine-based activation motifs (ITAMs) for phosphorylation and activation of the CAR-expressing T cell. Signalling regions comprising sequences of other ITAM-containing proteins such as FcyRI have also been employed in CARs (Haynes et al., 2001 J Immunol 166(1 ): 182-187). Signalling regions of CARs may also comprise co-stimulatory sequences derived from the signalling region of co-stimulatory molecules, to facilitate activation of CAR-expressing T cells upon binding to the target protein. Suitable co-stimulatory molecules include CD28, 0X40, 4-1 BB, ICOS and CD27. In some cases CARs are engineered to provide for co-stimulation of different intracellular signalling pathways. For example, signalling associated with CD28 costimulation preferentially activates the phosphatidylinositol 3-kinase (PI3K) pathway, whereas the 4-1 BB-mediated signalling is through TNF receptor associated factor (TRAF) adaptor proteins. Signalling regions of CARs therefore sometimes contain co-stimulatory sequences derived from signalling regions of more than one co-stimulatory molecule. In some embodiments, the CAR of the present invention comprises one or more co-stimulatory sequences comprising or consisting of an amino acid sequence which comprises, consists of, or is derived from, the amino acid sequence of the intracellular domain of one or more of CD28, 0X40, 4-1 BB, ICOS and CD27.
An optional hinge region may provide separation between the antigen-binding domain and the transmembrane domain, and may act as a flexible linker. Hinge regions may be derived from lgG1. In some embodiments, the CAR of the present invention comprises a hinge region comprising or consisting of an amino acid sequence which comprises, consists of, or is derived from, the amino acid sequence of the hinge region of IgG 1.
Also provided is a cell comprising a CAR according to the invention. The CAR according to the present invention may be used to generate CAR-expressing immune cells, e.g. CAR-T or CAR-NK cells.
Engineering of CARs into immune cells may be performed during culture, in vitro.
The antigen-binding region of the CAR of the present invention may be provided with any suitable format, e.g. scFv, scFab, etc.
Nucleic acids and vectors
The present invention provides a nucleic acid, or a plurality of nucleic acids, encoding an antigen-binding molecule, polypeptide or CAR according to the present invention.
In some embodiments, the nucleic acid is purified or isolated, e.g. from other nucleic acid, or naturally- occurring biological material. In some embodiments the nucleic acid(s) comprise or consist of DNA and/or RNA.
The present invention also provides a vector, or plurality of vectors, comprising the nucleic acid or plurality of nucleic acids according to the present invention.
The nucleotide sequence may be contained in a vector, e.g. an expression vector. A“vector” as used herein is a nucleic acid molecule used as a vehicle to transfer exogenous nucleic acid into a cell. The vector may be a vector for expression of the nucleic acid in the cell. Such vectors may include a promoter sequence operably linked to the nucleotide sequence encoding the sequence to be expressed. A vector may also include a termination codon and expression enhancers. Any suitable vectors, promoters, enhancers and termination codons known in the art may be used to express a peptide or polypeptide from a vector according to the invention. The term“operably linked” may include the situation where a selected nucleic acid sequence and regulatory nucleic acid sequence (e.g. promoter and/or enhancer) are covalently linked in such a way as to place the expression of nucleic acid sequence under the influence or control of the regulatory sequence (thereby forming an expression cassette). Thus a regulatory sequence is operably linked to the selected nucleic acid sequence if the regulatory sequence is capable of effecting transcription of the nucleic acid sequence. The resulting transcript(s) may then be translated into a desired
peptide(s)/polypeptide(s).
Suitable vectors include plasmids, binary vectors, DNA vectors, mRNA vectors, viral vectors (e.g.
gammaretroviral vectors (e.g. murine Leukemia virus (MLV)-derived vectors), lentiviral vectors, adenovirus vectors, adeno-associated virus vectors, vaccinia virus vectors and herpesvirus vectors), transposon-based vectors, and artificial chromosomes (e.g. yeast artificial chromosomes).
In some embodiments, the vector may be a eukaryotic vector, e.g. a vector comprising the elements necessary for expression of protein from the vector in a eukaryotic cell. In some embodiments, the vector may be a mammalian vector, e.g. comprising a cytomegalovirus (CMV) or SV40 promoter to drive protein expression.
Constituent polypeptides of an antigen-binding molecule according to the present invention may be encoded by different nucleic acids of the plurality of nucleic acids, or by different vectors of the plurality of vectors.
Cells comprising/expressinq the antiqen-bindinq molecules and polypeptides
The present invention also provides a cell comprising or expressing an antigen-binding molecule, polypeptide or CAR according to the present invention. Also provided is a cell comprising or expressing a nucleic acid, a plurality of nucleic acids, a vector or a plurality of vectors according to the invention.
The cell may be a eukaryotic cell, e.g. a mammalian cell. The mammal may be a primate (rhesus, cynomolgous, non-human primate or human) or a non-human mammal (e.g. rabbit, guinea pig, rat, mouse or other rodent (including any animal in the order Rodentia), cat, dog, pig, sheep, goat, cattle (including cows, e.g. dairy cows, or any animal in the order Bos), horse (including any animal in the order Equidae), donkey, and non-human primate).
The present invention also provides a method for producing a cell comprising a nucleic acid(s) or vector(s) according to the present invention, comprising introducing a nucleic acid, a plurality of nucleic acids, a vector or a plurality of vectors according to the present invention into a cell. In some
embodiments, introducing an isolated nucleic acid(s) or vector(s) according to the invention into a cell comprises transformation, transfection, electroporation or transduction (e.g. retroviral transduction).
The present invention also provides a method for producing a cell expressing/comprising an antigenbinding molecule, polypeptide or CAR according to the present invention, comprising introducing a nucleic acid, a plurality of nucleic acids, a vector or a plurality of vectors according to the present invention in a cell. In some embodiments, the methods additionally comprise culturing the cell under conditions suitable for expression of the nucleic acid(s) or vector(s) by the cell. In some embodiments, the methods are performed in vitro.
The present invention also provides cells obtained or obtainable by the methods according to the present invention.
Producing the antigen-binding molecules and polypeptides
Antigen-binding molecules and polypeptides according to the invention may be prepared according to methods for the production of polypeptides known to the skilled person.
Polypeptides may be prepared by chemical synthesis, e.g. liquid or solid phase synthesis. For example, peptides/polypeptides can by synthesised using the methods described in, for example, Chandrudu et al., Molecules (2013), 18: 4373-4388, which is hereby incorporated by reference in its entirety.
Alternatively, antigen-binding molecules and polypeptides may be produced by recombinant expression. Molecular biology techniques suitable for recombinant production of polypeptides are well known in the art, such as those set out in Green and Sambrook, Molecular Cloning: A Laboratory Manual (4th Edition), Cold Spring Harbor Press, 2012, and in Nat Methods. (2008); 5(2): 135-146 both of which are hereby incorporated by reference in their entirety. Methods for the recombinant production of antigen-binding molecules are also described in Frenzel et al., Front Immunol. (2013); 4: 217 and Kunert and Reinhart, Appl Microbiol Biotechnol. (2016) 100: 3451-3461 , both of which are hereby incorporated by reference in their entirety.
In some cases the antigen-binding molecule of the present invention are comprised of more than one polypeptide chain. In such cases, production of the antigen-binding molecules may comprise transcription and translation of more than one polypeptide, and subsequent association of the polypeptide chains to form the antigen-binding molecule.
For recombinant production according to the invention, any cell suitable for the expression of
polypeptides may be used. The cell may be a prokaryote or eukaryote. In some embodiments the cell is a prokaryotic cell, such as a cell of archaea or bacteria. In some embodiments the bacteria may be Gramnegative bacteria such as bacteria of the family Enterobacteriaceae, for example Escherichia coli. In some embodiments, the cell is a eukaryotic cell such as a yeast cell, a plant cell, insect cell or a mammalian cell, e.g. CHO, HEK (e.g. HEK293), HeLa or COS cells.
In some cases the cell is not a prokaryotic cell because some prokaryotic cells do not allow for the same folding or post-translational modifications as eukaryotic cells. In addition, very high expression levels are possible in eukaryotes and proteins can be easier to purify from eukaryotes using appropriate tags.
Specific plasmids may also be utilised which enhance secretion of the protein into the media. In some embodiments polypeptides may be prepared by cell-free-protein synthesis (CFPS), e.g.
according using a system described in Zemella et al. Chembiochem (2015) 16(17): 2420-2431 , which is hereby incorporated by reference in its entirety.
Production may involve culture or fermentation of a eukaryotic cell modified to express the polypeptide(s) of interest. The culture or fermentation may be performed in a bioreactor provided with an appropriate supply of nutrients, air/oxygen and/or growth factors. Secreted proteins can be collected by partitioning culture media/fermentation broth from the cells, extracting the protein content, and separating individual proteins to isolate secreted polypeptide(s). Culture, fermentation and separation techniques are well known to those of skill in the art, and are described, for example, in Green and Sambrook, Molecular Cloning: A Laboratory Manual (4th Edition; incorporated by reference herein above).
Bioreactors include one or more vessels in which cells may be cultured. Culture in the bioreactor may occur continuously, with a continuous flow of reactants into, and a continuous flow of cultured cells from, the reactor. Alternatively, the culture may occur in batches. The bioreactor monitors and controls environmental conditions such as pH, oxygen, flow rates into and out of, and agitation within the vessel such that optimum conditions are provided for the cells being cultured.
Following culturing the cells that express the antigen-binding molecule/polypeptide(s), the polypeptide(s) of interest may be isolated. Any suitable method for separating proteins from cells known in the art may be used. In order to isolate the polypeptide it may be necessary to separate the cells from nutrient medium. If the polypeptide(s) are secreted from the cells, the cells may be separated by centrifugation from the culture media that contains the secreted polypeptide(s) of interest. If the polypeptide(s) of interest collect within the cell, protein isolation may comprise centrifugation to separate cells from cell culture medium, treatment of the cell pellet with a lysis buffer, and cell disruption e.g. by sonification, rapid freeze-thaw or osmotic lysis.
It may then be desirable to isolate the polypeptide(s) of interest from the supernatant or culture medium, which may contain other protein and non-protein components. A common approach to separating protein components from a supernatant or culture medium is by precipitation. Proteins of different solubilities are precipitated at different concentrations of precipitating agent such as ammonium sulfate. For example, at low concentrations of precipitating agent, water soluble proteins are extracted. Thus, by adding different increasing concentrations of precipitating agent, proteins of different solubilities may be distinguished. Dialysis may be subsequently used to remove ammonium sulfate from the separated proteins.
Other methods for distinguishing different proteins are known in the art, for example ion exchange chromatography and size chromatography. These may be used as an alternative to precipitation, or may be performed subsequently to precipitation.
Once the polypeptide(s) of interest have been isolated from culture it may be desired or necessary to concentrate the polypeptide(s). A number of methods for concentrating proteins are known in the art, such as ultrafiltration or lyophilisation. Compositions
The present invention also provides compositions comprising the antigen-binding molecules, polypeptides, CARs, nucleic acids, expression vectors and cells described herein.
The antigen-binding molecules, polypeptides, CARs, nucleic acids, expression vectors and cells described herein may be formulated as pharmaceutical compositions or medicaments for clinical use and may comprise a pharmaceutically acceptable carrier, diluent, excipient or adjuvant. The composition may be formulated for topical, parenteral, systemic, intracavitary, intravenous, intra-arterial, intramuscular, intrathecal, intraocular, intraconjunctival, intratumoral, subcutaneous, intradermal, intrathecal, oral or transdermal routes of administration which may include injection or infusion.
Suitable formulations may comprise the antigen-binding molecule in a sterile or isotonic medium.
Medicaments and pharmaceutical compositions may be formulated in fluid, including gel, form. Fluid formulations may be formulated for administration by injection or infusion (e.g. via catheter) to a selected region of the human or animal body.
In some embodiments the composition is formulated for injection or infusion, e.g. into a blood vessel or tumor.
In accordance with the invention described herein methods are also provided for the production of pharmaceutically useful compositions, such methods of production may comprise one or more steps selected from: producing an antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof) or cell described herein; isolating an antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof) or cell described herein; and/or mixing antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof) or cell described herein with a pharmaceutically acceptable carrier, adjuvant, excipient or diluent.
For example, a further aspect the invention described herein relates to a method of formulating or producing a medicament or pharmaceutical composition for use in the treatment of a disease/condition (e.g. a cancer), the method comprising formulating a pharmaceutical composition or medicament by mixing an antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof) or cell described herein with a pharmaceutically acceptable carrier, adjuvant, excipient or diluent.
Therapeutic and prophylactic applications
The antigen-binding molecules, polypeptides, CARs, nucleic acids, expression vectors, cells and compositions described herein find use in therapeutic and prophylactic methods.
The present invention provides an antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof), cell or composition described herein for use in a method of medical treatment or prophylaxis. Also provided is the use of an antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof), cell or composition described herein in the manufacture of a medicament for treating or preventing a disease or condition. Also provided is a method of treating or preventing a disease or condition, comprising administering to a subject a therapeutically or prophylactically effective amount of an antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof), cell or composition described herein.
The methods may be effective to reduce the development or progression of a disease/condition, alleviation of the symptoms of a disease/condition or reduction in the pathology of a disease/condition. The methods may be effective to prevent progression of the disease/condition, e.g. to prevent worsening of, or to slow the rate of development of, the disease/condition. In some embodiments the methods may lead to an improvement in the disease/condition, e.g. a reduction in the symptoms of the
disease/condition or reduction in some other correlate of the severity/activity of the disease/condition. In some embodiments the methods may prevent development of the disease/condition a later stage (e.g. a chronic stage or metastasis).
It will be appreciated that the articles of the present invention may be used for the treatment/prevention of any disease/condition that would derived therapeutic or prophylactic benefit from a reduction in the number and/or activity of cells expressing CD47, BCMA and/or TACI. For example, the disease/condition may be a disease/condition in which cells expressing CD47, BCMA and/or TACI are pathologically implicated, e.g. a disease/condition in which an increased number/proportion of cells expressing CD47, BCMA and/or TACI is positively associated with the onset, development or progression of the disease/condition, and/or severity of one or more symptoms of the disease/condition, or for which an increased number/proportion of cells expressing CD47, BCMA and/or TACI, is a risk factor for the onset, development or progression of the disease/condition.
In some embodiments, the disease/condition to be treated/prevented in accordance with the present invention is a disease/condition characterised by an increase in the number/proportion/activity of cells expressing CD47, BCMA and/or TACI, e.g. as compared to the number/proportion/activity of cells expressing CD47, BCMA and/or TACI in the absence of the disease/condition.
In some embodiments the disease/condition to be treated/prevented is a cancer. CD47 has been proposed to be a cell-surface marker expressed by all human cancers (Willingham et al. Proc Natl Acad Sci U S A. (2012) 109(17): 6662-6667)
The cancer may be any unwanted cell proliferation (or any disease manifesting itself by unwanted cell proliferation), neoplasm or tumor. The cancer may be benign or malignant and may be primary or secondary (metastatic). A neoplasm or tumor may be any abnormal growth or proliferation of cells and may be located in any tissue. The cancer may be of tissues/cells derived from e.g. the adrenal gland, adrenal medulla, anus, appendix, bladder, blood, bone, bone marrow, brain, breast, cecum, central nervous system (including or excluding the brain) cerebellum, cervix, colon, duodenum, endometrium, epithelial cells (e.g. renal epithelia), gallbladder, oesophagus, glial cells, heart, ileum, jejunum, kidney, lacrimal glad, larynx, liver, lung, lymph, lymph node, lymphoblast, maxilla, mediastinum, mesentery, myometrium, nasopharynx, omentum, oral cavity, ovary, pancreas, parotid gland, peripheral nervous system, peritoneum, pleura, prostate, salivary gland, sigmoid colon, skin, small intestine, soft tissues, spleen, stomach, testis, thymus, thyroid gland, tongue, tonsil, trachea, uterus, vulva, white blood cells.
Tumors to be treated may be nervous or non-nervous system tumors. Nervous system tumors may originate either in the central or peripheral nervous system, e.g. glioma, medulloblastoma, meningioma, neurofibroma, ependymoma, Schwannoma, neurofibrosarcoma, astrocytoma and oligodendroglioma. Non-nervous system cancers/tumors may originate in any other non-nervous tissue, examples include melanoma, mesothelioma, lymphoma, myeloma, leukemia, Non-Hodgkin’s lymphoma (NHL), Hodgkin’s lymphoma, chronic myelogenous leukemia (CML), acute myeloid leukemia (AML), myelodysplastic syndrome (MDS), cutaneous T-cell lymphoma (CTCL), chronic lymphocytic leukemia (CLL), hepatoma, epidermoid carcinoma, prostate carcinoma, breast cancer, lung cancer, colon cancer, ovarian cancer, pancreatic cancer, thymic carcinoma, NSCLC, hematologic cancer and sarcoma.
The treatment/prevention may be aimed at one or more of: delaying/preventing the onset/progression of symptoms of the cancer, reducing the severity of symptoms of the cancer, reducing the
survival/growth/invasion/metastasis of cells of the cancer, reducing the number of cells of the cancer and/or increasing survival of the subject.
In some embodiments, the cancer to be treated/prevented comprises cells expressing CD47, BCMA and/or TACI. In some embodiments, the cancer to be treated/prevented is a cancer which is positive for CD47, BCMA and/or TACI. In some embodiments, the cancer over-expresses CD47 and/or BCMA. Overexpression of CD47, BCMA and/or TACI can be determined by detection of a level of expression of CD47, BCMA and/or TACI which is greater than the level of expression by equivalent non-cancerous cells/non-tumor tissue.
CD47, BCMA and/or TACI expression may be determined by any suitable means. Expression may be gene expression or protein expression. Gene expression can be determined e.g. by detection of mRNA encoding CD47, BCMA and/or TACI, for example by quantitative real-time PCR (qRT-PCR). Protein expression can be determined e.g. by detection of CD47, BCMA and/or TACI, for example by antibody- based methods, for example by western blot, immunohistochemistry, immunocytochemistry, flow cytometry, or ELISA.
In some embodiments, a patient may be selected for treatment described herein based on the detection of a cancer expressing CD47, BCMA and/or TACI, or overexpressing CD47, BCMA and/or TACI, e.g. in a sample obtained from the subject.
The role of CD47 in the development and progression of various cancers is reviewed e.g. in Sick et al. Br J Pharmacol. (2012) 167(7): 1415-1430 and Chao et al., Curr Opin Immunol. 2012 Apr; 24(2): 225-232 (hereby incorporated by reference in its entirety). Elevated CD47 expression is a negative prognostic indicator for several cancers, and may contribute to cancer development/progression by reducing killing of cancer cells and by increasing proliferation, migration and/or invasion of cancer cells. CD47 has been shown to suppress innate macrophage and NK cell-mediated anticancer responses (Soto-Pantoja et al., Expert Opin Ther Targets. (2013) 17(1 ): 89-103, which is hereby incorporated by reference in its entirety).
CD47 is expressed by acute myeloid leukemia (AML), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), non-Hodgkin’s lymphoma (NHL), multiple myeloma (MM), bladder cancer, brain cancer and ovarian cancer cells. Willingham et al. Proc Natl Acad Sci U S A. (2012) 109(17): 6662- 6667 reported expression of CD47 on cells of ovarian, breast, colon, bladder, glioblastoma, hepatocellular carcinoma, and prostate tumors, and CD47 has recently been shown to promote tumor invasion and metastasis in Non-small Cell Lung Cancer (NSCLC; Zhao et al., Sci Rep. (2016) 6: 29719) and melanoma (Ngo et al., Cell Reports (2016) 16, 1701-1716).
Accordingly, in some embodiments the cancer to be treated/prevented in accordance with the present invention is selected from: a hematologic malignancy, a myeloid hematologic malignancy, a lymphoblastic hematologic malignancy, myelodysplastic syndrome (MDS), acute myeloid leukemia (AML), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), non-Hodgkin’s lymphoma (NHL), multiple myeloma (MM), bladder cancer, brain cancer, glioblastoma, ovarian cancer, breast cancer, colon cancer, liver cancer, hepatocellular carcinoma, prostate cancer, lung cancer, Non-small Cell Lung Cancer (NSCLC), skin cancer and melanoma.
CD47, BCMA and TACI are particularly attractive therapeutics targets for multiple myeloma because they are co-expressed by multiple myeloma cells, and play functional roles which therefore reduce risk of antigen loss. The large population of tissue-resident macrophages in the liver (Kupffer cells) represents an attractive therapeutic mechanism for hematological malignancies, and macrophage-driven clearance of malignant cells offers a further route for neo-antigen presentation to adaptive immune system.
CD47 is also implicated in the pathogenesis of autoimmune diseases, inflammatory diseases, ischemia- reperfusion injury (IRI) and cardiovascular diseases (see e.g. Soto-Pantoja et al., Expert Opin Ther Targets. (2013) 17(1 ): 89-103). The CD47-SIRPa axis has been implicated in type I diabetes (Dugas et al., J Autoimmun. (2010) 35(1 ):23-32). Thrombospondin-1 has been shown to act via CD47 to inhibit nitric oxide signaling throughout the vascular system, and blocking TSP1-CD47 interaction alleviates tissue ischemia (Isenberg et al., Arterioscler Thromb Vase Biol. (2008) 28(4): 615-621 ) and reduces ischemia- reperfusion injury (IRI) (Xiao et al., Liver Transpl. (2015) 21(4): 468-477).
Accordingly, in some embodiments the disease/disorder to be treated/prevented is a cancer, an autoimmune disease (e.g. type I diabetes), an inflammatory disease, ischemia-reperfusion injury (IRI) or cardiovascular disease.
BCMA and TACI are expressed by cells of B cell malignancies such as multiple myeloma, Hodgkin’s lymphoma, non-Hodgkin’s lymphoma (e.g. Burkitt lymphoma) and lymphocytic leukemia. The anti-BCMA antibody-drug conjugate J6M0-mcMMAF (GSK2857916) has been investigated for the treatment of multiple myeloma (see e.g. Tai et al., Blood. (2014) 123(20): 3128-3138), and the BCMA/TACI antagonist Atacicept (recombinant fusion protein of the BAFF- and APRIL-binding domains of TACI receptor; see Hartung et al. Ther Adv Neurol Disord. (2010) 3(4): 205-216) has been investigated as an agent for use in the treatment of multiple myeloma, B-cell chronic lymphocytic leukemia, and non-Hodgkin's lymphoma (Vasiliou, Drugs Fut 2008, 33(1 1 ): 921 ). Atacicept has also been investigated as a treatment for systemic lupus erythematosus (SLE), rheumatoid arthritis (RA) optic neuritis and multiple sclerosis (MS) - see e.g. Hartung et al. Ther Adv Neurol Disord. (2010) 3(4): 205-216.
Multiple myeloma (MM) is a hematopoietic neoplasia characterized by the clonal proliferation of malignant plasma cells in the bone marrow (see e.g. Ghobrial et al., Nat Rev Clin Oncol (2018) 15(4):219-233). The bone marrow microenvironment plays a crucial role in MM by promoting the proliferation of plasma cells and resistance to conventional therapies. MM cells subvert the bone marrow microenvironment to suppress immune responses and promote their own growth. Overexpression of CD47 by the MM cells prevents their phagocytosis through ligation of SIRPa on tumor-associated and bone marrow-resident macrophages, and overexpression of BCMA and TACI promotes their survival, immune checkpoint suppression, angiogenesis, osteoclast activation, and drug resistance. Secretion of APRIL (the ligand of BCMA and TACI) by abnormal osteoclasts enhances the tumorigenic functions of MM cells and promotes remodelling of the bone marrow microenvironment, and overexpression of CD38 by the MM cells promotes the binding and migration through the endothelial cell wall, proliferation, and immune suppression.
Accordingly, in some embodiments the disease/disorder to be treated/prevented is a hematological malignancy, a B cell malignancy, multiple myeloma (MM), lymphoma, B cell lymphoma, Hodgkin’s lymphoma (HL), non-Hodgkin’s lymphoma (NHL), Burkitt lymphoma, lymphocytic leukemia, an autoimmune disease, systemic lupus erythematosus (SLE), rheumatoid arthritis (RA) optic neuritis or multiple sclerosis (MS).
Administration of the articles of the present invention is preferably in a "therapeutically effective” or “prophylactically effective” amount, this being sufficient to show therapeutic or prophylactic benefit to the subject. The actual amount administered, and rate and time-course of administration, will depend on the nature and severity of the disease/condition and the particular article administered. Prescription of treatment, e.g. decisions on dosage etc., is within the responsibility of general practitioners and other medical doctors, and typically takes account of the disease/disorder to be treated, the condition of the individual subject, the site of delivery, the method of administration and other factors known to practitioners. Examples of the techniques and protocols mentioned above can be found in Remington’s Pharmaceutical Sciences, 20th Edition, 2000, pub. Lippincott, Williams & Wilkins.
Administration may be alone or in combination with other treatments, either simultaneously or sequentially dependent upon the condition to be treated. The antigen-binding molecule or composition described herein and a therapeutic agent may be administered simultaneously or sequentially. In some embodiments, the methods comprise additional therapeutic or prophylactic intervention, e.g. for the treatment/prevention of a cancer. In some embodiments, the therapeutic or prophylactic intervention is selected from chemotherapy, immunotherapy, radiotherapy, surgery, vaccination and/or hormone therapy. In some embodiments, the therapeutic or prophylactic intervention comprises leukapheresis. In some embodiments the therapeutic or prophylactic intervention comprises a stem cell transplant.
The antigen-binding molecules of the present invention are particularly suitable for use in conjunction with radiotherapy. Antagonism of CD47 has previously been shown to help maintain the viability of normal tissues after irradiation, while increasing the radiosensitivity of tumors (Maxhimer et al., Science
Translational Medicine (2009) 1 (3): 3ra7).
Simultaneous administration refers to administration of the antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof), cell or composition and therapeutic agent together, for example as a pharmaceutical composition containing both agents (combined preparation), or immediately after each other and optionally via the same route of
administration, e.g. to the same artery, vein or other blood vessel. Sequential administration refers to administration of one of the antigen-binding molecule/composition or therapeutic agent followed after a given time interval by separate administration of the other agent. It is not required that the two agents are administered by the same route, although this is the case in some embodiments. The time interval may be any time interval.
Chemotherapy and radiotherapy respectively refer to treatment of a cancer with a drug or with ionising radiation (e.g. radiotherapy using X-rays or g-rays). The drug may be a chemical entity, e.g. small molecule pharmaceutical, antibiotic, DNA intercalator, protein inhibitor (e.g. kinase inhibitor), or a biological agent, e.g. antibody, antibody fragment, aptamer, nucleic acid (e.g. DNA, RNA), peptide, polypeptide, or protein. The drug may be formulated as a pharmaceutical composition or medicament. The formulation may comprise one or more drugs (e.g. one or more active agents) together with one or more pharmaceutically acceptable diluents, excipients or carriers.
A treatment may involve administration of more than one drug. A drug may be administered alone or in combination with other treatments, either simultaneously or sequentially dependent upon the condition to be treated. For example, the chemotherapy may be a co-therapy involving administration of two drugs, one or more of which may be intended to treat the cancer.
The chemotherapy may be administered by one or more routes of administration, e.g. parenteral, intravenous injection, oral, subcutaneous, intradermal or intratumoral.
The chemotherapy may be administered according to a treatment regime. The treatment regime may be a pre-determined timetable, plan, scheme or schedule of chemotherapy administration which may be prepared by a physician or medical practitioner and may be tailored to suit the patient requiring treatment. The treatment regime may indicate one or more of: the type of chemotherapy to administer to the patient; the dose of each drug or radiation; the time interval between administrations; the length of each treatment; the number and nature of any treatment holidays, if any etc. For a co-therapy a single treatment regime may be provided which indicates how each drug is to be administered.
Chemotherapeutic drugs may be selected from: Abemaciclib, Abiraterone Acetate, Abitrexate
(Methotrexate), Abraxane (Paclitaxel Albumin-stabilized Nanoparticle Formulation), ABVD, ABVE, ABVE- PC, AC, Acalabrutinib, AC-T, Adcetris (Brentuximab Vedotin), ADE, Ado-Trastuzumab Emtansine, Adriamycin (Doxorubicin Hydrochloride), Afatinib Dimaleate, Afinitor (Everolimus), Akynzeo (Netupitant and Palonosetron Hydrochloride), Aldara (Imiquimod), Aldesleukin, Alecensa (Alectinib), Alectinib, Alemtuzumab, Alimta (Pemetrexed Disodium), Aliqopa (Copanlisib Hydrochloride), Alkeran for Injection (Melphalan Hydrochloride), Alkeran Tablets (Melphalan), Aloxi (Palonosetron Hydrochloride), Alunbrig (Brigatinib), Ambochlorin (Chlorambucil), Amboclorin (Chlorambucil), Amifostine, Aminolevulinic Acid, Anastrozole, Aprepitant, Aredia (Pamidronate Disodium), Arimidex (Anastrozole), Aromasin
(Exemestane), Arranon (Nelarabine), Arsenic Trioxide, Arzerra (Ofatumumab), Asparaginase Erwinia chrysanthemi, Atezolizumab, Avastin (Bevacizumab), Avelumab, Axicabtagene Ciloleucel, Axitinib, Azacitidine, Bavencio (Avelumab), BEACOPP, Becenum (Carmustine), Beleodaq (Belinostat), Belinostat, Bendamustine Hydrochloride, BEP, Besponsa (Inotuzumab Ozogamicin) , Bevacizumab, Bexarotene, Bexxar (Tositumomab and Iodine I 131 Tositumomab), Bicalutamide, BiCNU (Carmustine), Bleomycin, Blinatumomab, Blincyto (Blinatumomab), Bortezomib, Bosulif (Bosutinib), Bosutinib, Brentuximab Vedotin, Brigatinib, BuMel, Busulfan, Busulfex (Busulfan), Cabazitaxel, Cabometyx (Cabozantinib-S- Malate), Cabozantinib-S-Malate, CAF, Calquence (Acalabrutinib), Campath (Alemtuzumab), Camptosar (Irinotecan Hydrochloride), Capecitabine, CAPOX, Carac (Fluorouracil-Topical), Carboplatin,
CARBOPLATIN-TAXOL, Carfilzomib, Carmubris (Carmustine), Carmustine, Carmustine Implant,
Casodex (Bicalutamide), CEM, Ceritinib, Cerubidine (Daunorubicin Hydrochloride), Cervarix
(Recombinant HPV Bivalent Vaccine), Cetuximab, CEV, Chlorambucil, CHLORAMBUCIL-PREDNISONE, CHOP, Cisplatin, Cladribine, Clafen (Cyclophosphamide), Clofarabine, Clofarex (Clofarabine), Clolar (Clofarabine), CMF, Cobimetinib, Cometriq (Cabozantinib-S-Malate), Copanlisib Hydrochloride,
COPDAC, COPP, COPP-ABV, Cosmegen (Dactinomycin), Cotellic (Cobimetinib), Crizotinib, CVP, Cyclophosphamide, Cyfos (Ifosfamide), Cyramza (Ramucirumab), Cytarabine, Cytarabine Liposome, Cytosar-U (Cytarabine), Cytoxan (Cyclophosphamide), Dabrafenib, Dacarbazine, Dacogen (Decitabine), Dactinomycin, Daratumumab, Darzalex (Daratumumab), Dasatinib, Daunorubicin Hydrochloride, Daunorubicin Hydrochloride and Cytarabine Liposome, Decitabine, Defibrotide Sodium, Defitelio
(Defibrotide Sodium), Degarelix, Denileukin Diftitox, Denosumab, DepoCyt (Cytarabine Liposome), Dexamethasone, Dexrazoxane Hydrochloride, Dinutuximab, Docetaxel, Doxil (Doxorubicin Hydrochloride Liposome), Doxorubicin Hydrochloride, Doxorubicin Hydrochloride Liposome, Dox-SL (Doxorubicin Hydrochloride Liposome), DTIC-Dome (Dacarbazine), Durvalumab, Efudex (Fluorouracil-Topical), Elitek (Rasburicase), Ellence (Epirubicin Hydrochloride), Elotuzumab, Eloxatin (Oxaliplatin), Eltrombopag Olamine, Emend (Aprepitant), Empliciti (Elotuzumab), Enasidenib Mesylate, Enzalutamide, Epirubicin Hydrochloride, EPOCH, Erbitux (Cetuximab), Eribulin Mesylate, Erivedge (Vismodegib), Erlotinib Hydrochloride, Erwinaze (Asparaginase Erwinia chrysanthemi), Ethyol (Amifostine), Etopophos
(Etoposide Phosphate), Etoposide, Etoposide Phosphate, Evacet (Doxorubicin Hydrochloride Liposome), Everolimus, Evista (Raloxifene Hydrochloride), Evomela (Melphalan Hydrochloride), Exemestane, 5-FU (Fluorouracil Injection), 5-FU (Fluorouracil-Topical), Fareston (Toremifene), Farydak (Panobinostat), Faslodex (Fulvestrant), FEC, Femara (Letrozole), Filgrastim, Fludara (Fludarabine Phosphate),
Fludarabine Phosphate, Fluoroplex (Fluorouracil-Topical), Fluorouracil Injection, Fluorouracil-Topical, Flutamide, Folex (Methotrexate), Folex PFS (Methotrexate), FOLFIRI, FOLFIRI-BEVACIZUMAB, FOLFIRI-CETUXIMAB, FOLFIRINOX, FOLFOX, Folotyn (Pralatrexate), FU-LV, Fulvestrant, Gardasil (Recombinant HPV Quadrivalent Vaccine), Gardasil 9 (Recombinant HPV Nonavalent Vaccine), Gazyva (Obinutuzumab), Gefitinib, Gemcitabine Hydrochloride, GEMCITABINE-CISPLATIN, GEMCITABINE- OXALIPLATIN, Gemtuzumab Ozogamicin, Gemzar (Gemcitabine Hydrochloride), Gilotrif (Afatinib Dimaleate), Gleevec (Imatinib Mesylate), Gliadel (Carmustine Implant), Gliadel wafer (Carmustine Implant), Glucarpidase, Goserelin Acetate, Halaven (Eribulin Mesylate), Hemangeol (Propranolol Hydrochloride), Herceptin (Trastuzumab), HPV Bivalent Vaccine, Recombinant, HPV Nonavalent Vaccine, Recombinant, HPV Quadrivalent Vaccine, Recombinant, Hycamtin (Topotecan Hydrochloride), Hydrea (Hydroxyurea), Hydroxyurea, Hyper-CVAD, Ibrance (Palbociclib), Ibritumomab Tiuxetan, Ibrutinib, ICE, lclusig (Ponatinib Hydrochloride), Idamycin (Idarubicin Hydrochloride), Idarubicin Hydrochloride, Idelalisib, Idhifa (Enasidenib Mesylate), Ifex (Ifosfamide), Ifosfamide, Ifosfamidum (Ifosfamide), IL-2 (Aldesleukin), Imatinib Mesylate, Imbruvica (Ibrutinib), Imfinzi (Durvalumab), Imiquimod, Imlygic
(Talimogene Laherparepvec), Inlyta (Axitinib), Inotuzumab Ozogamicin, Interferon Alfa-2b, Recombinant, lnterleukin-2 (Aldesleukin), Intron A (Recombinant Interferon Alfa-2b), Iodine I 131 Tositumomab and Tositumomab, Ipilimumab, Iressa (Gefitinib), Irinotecan Hydrochloride, Irinotecan Hydrochloride
Liposome, Istodax (Romidepsin), Ixabepilone, Ixazomib Citrate, Ixempra (Ixabepilone), Jakafi (Ruxolitinib Phosphate), JEB, Jevtana (Cabazitaxel), Kadcyla (Ado-Trastuzumab Emtansine), Keoxifene (Raloxifene Hydrochloride), Kepivance (Palifermin), Keytruda (Pembrolizumab), Kisqali (Ribociclib), Kymriah
(Tisagenlecleucel), Kyprolis (Carfilzomib), Lanreotide Acetate, Lapatinib Ditosylate, Lartruvo
(Olaratumab), Lenalidomide, Lenvatinib Mesylate, Lenvima (Lenvatinib Mesylate), Letrozole, Leucovorin Calcium, Leukeran (Chlorambucil), Leu prolide Acetate, Leustatin (Cladribine), Levulan (Aminolevulinic Acid), Linfolizin (Chlorambucil), LipoDox (Doxorubicin Hydrochloride Liposome), Lomustine, Lonsurf (Trifluridine and Tipiracil Hydrochloride), Lupron (Leuprolide Acetate), Lupron Depot (Leuprolide Acetate), Lupron Depot-Ped (Leuprolide Acetate), Lynparza (Olaparib), Marqibo (Vincristine Sulfate Liposome), Matulane (Procarbazine Hydrochloride), Mechlorethamine Hydrochloride, Megestrol Acetate, Mekinist (Trametinib), Melphalan, Melphalan Hydrochloride, Mercaptopurine, Mesna, Mesnex (Mesna),
Methazolastone (Temozolomide), Methotrexate, Methotrexate LPF (Methotrexate), Methylnaltrexone Bromide, Mexate (Methotrexate), Mexate-AQ (Methotrexate), Midostaurin, Mitomycin C, Mitoxantrone Hydrochloride, Mitozytrex (Mitomycin C), MOPP, Mozobil (Plerixafor), Mustargen (Mechlorethamine Hydrochloride), Mutamycin (Mitomycin C), Myleran (Busulfan), Mylosar (Azacitidine), Mylotarg
(Gemtuzumab Ozogamicin), Nanoparticle Paclitaxel (Paclitaxel Albumin-stabilized Nanoparticle
Formulation), Navelbine (Vinorelbine Tartrate), Necitumumab, Nelarabine, Neosar (Cyclophosphamide), Neratinib Maleate, Nerlynx (Neratinib Maleate), Netupitant and Palonosetron Hydrochloride, Neulasta (Pegfilgrastim), Neupogen (Filgrastim), Nexavar (Sorafenib Tosylate), Nilandron (Nilutamide), Nilotinib, Nilutamide, Ninlaro (Ixazomib Citrate), Niraparib Tosylate Monohydrate, Nivolumab, Nolvadex (Tamoxifen Citrate), Nplate (Romiplostim), Obinutuzumab, Odomzo (Sonidegib), OEPA, Ofatumumab, OFF,
Olaparib, Olaratumab, Omacetaxine Mepesuccinate, Oncaspar (Pegaspargase), Ondansetron
Hydrochloride, Onivyde (Irinotecan Hydrochloride Liposome), Ontak (Denileukin Diftitox), Opdivo (Nivolumab), OPPA, Osimertinib, Oxaliplatin, Paclitaxel, Paclitaxel Albumin-stabilized Nanoparticle Formulation, PAD, Palbociclib, Palifermin, Palonosetron Hydrochloride, Palonosetron Hydrochloride and Netupitant, Pamidronate Disodium, Panitumumab, Panobinostat, Paraplat (Carboplatin), Paraplatin (Carboplatin), Pazopanib Hydrochloride, PCV, PEB, Pegaspargase, Pegfilgrastim, Peginterferon Alfa-2b, PEG-lntron (Peginterferon Alfa-2b), Pembrolizumab, Pemetrexed Disodium, Perjeta (Pertuzumab), Pertuzumab, Platinol (Cisplatin), Platinol-AQ (Cisplatin), Plerixafor, Pomalidomide, Pomalyst
(Pomalidomide), Ponatinib Hydrochloride, Portrazza (Necitumumab), Pralatrexate, Prednisone,
Procarbazine Hydrochloride, Proleukin (Aldesleukin), Prolia (Denosumab), Promacta (Eltrombopag Olamine), Propranolol Hydrochloride, Provenge (Sipuleucel-T), Purinethol (Mercaptopurine), Purixan (Mercaptopurine), Radium 223 Dichloride, Raloxifene Hydrochloride, Ramucirumab, Rasburicase, R- CHOP, R-CVP, Recombinant Human Papillomavirus (HPV) Bivalent Vaccine, Recombinant Human Papillomavirus (HPV) Nonavalent Vaccine, Recombinant Human Papillomavirus (HPV) Quadrivalent Vaccine, Recombinant Interferon Alfa-2b, Regorafenib, Relistor (Methylnaltrexone Bromide), R-EPOCH, Revlimid (Lenalidomide), Rheumatrex (Methotrexate), Ribociclib, R-ICE, Rituxan (Rituximab), Rituxan Hycela (Rituximab and Hyaluronidase Human), Rituximab, Rituximab and Hyaluronidase Human, Rolapitant Hydrochloride, Romidepsin, Romiplostim, Rubidomycin (Daunorubicin Hydrochloride),
Rubraca (Rucaparib Camsylate), Rucaparib Camsylate, Ruxolitinib Phosphate, Rydapt (Midostaurin), Sclerosol Intrapleural Aerosol (Talc), Siltuximab, Sipuleucel-T, Somatuline Depot (Lanreotide Acetate), Sonidegib, Sorafenib Tosylate, Sprycel (Dasatinib), STANFORD V, Sterile Talc Powder (Talc), Steritalc (Talc), Stivarga (Regorafenib), Sunitinib Malate, Sutent (Sunitinib Malate), Sylatron (Peginterferon Alfa- 2b), Sylvant (Siltuximab), Synribo (Omacetaxine Mepesuccinate), Tabloid (Thioguanine), TAC, Tafinlar (Dabrafenib), Tagrisso (Osimertinib), Talc, Talimogene Laherparepvec, Tamoxifen Citrate, Tarabine PFS (Cytarabine), Tarceva (Erlotinib Hydrochloride), Targretin (Bexarotene), Tasigna (Nilotinib), Taxol (Paclitaxel), Taxotere (Docetaxel), Tecentriq (Atezolizumab), Temodar (Temozolomide), Temozolomide, Temsirolimus, Thalidomide, Thalomid (Thalidomide), Thioguanine, Thiotepa, Tisagenlecleucel, Tolak (Fluorouracil-Topical), Topotecan Hydrochloride, Toremifene, Torisel (Temsirolimus), Tositumomab and Iodine I 131 Tositumomab, Totect (Dexrazoxane Hydrochloride), TPF, Trabectedin, Trametinib, Trastuzumab, Treanda (Bendamustine Hydrochloride), Trifluridine and Tipiracil Hydrochloride, Trisenox (Arsenic Trioxide), Tykerb (Lapatinib Ditosylate), Unituxin (Dinutuximab), Uridine Triacetate, VAC, Valrubicin, Valstar (Valrubicin), Vandetanib, VAMP, Varubi (Rolapitant Hydrochloride), Vectibix
(Panitumumab), VelP, Velban (Vinblastine Sulfate), Velcade (Bortezomib), Velsar (Vinblastine Sulfate), Vemurafenib, Venclexta (Venetoclax), Venetoclax, Verzenio (Abemaciclib), Viadur (Leuprolide Acetate), Vidaza (Azacitidine), Vinblastine Sulfate, Vincasar PFS (Vincristine Sulfate), Vincristine Sulfate, Vincristine Sulfate Liposome, Vinorelbine Tartrate, VIP, Vismodegib, Vistogard (Uridine Triacetate), Voraxaze (Glucarpidase), Vorinostat, Votrient (Pazopanib Hydrochloride), Vyxeos (Daunorubicin Hydrochloride and Cytarabine Liposome), Wellcovorin (Leucovorin Calcium), Xalkori (Crizotinib), Xeloda (Capecitabine), XELIRI, XELOX, Xgeva (Denosumab), Xofigo (Radium 223 Dichloride), Xtandi
(Enzalutamide), Yervoy (Ipilimumab), Yescarta (Axicabtagene Ciloleucel), Yondelis (Trabectedin), Zaltrap (Ziv-Aflibercept), Zarxio (Filgrastim), Zejula (Niraparib Tosylate Monohydrate), Zelboraf (Vemurafenib), Zevalin (Ibritumomab Tiuxetan), Zinecard (Dexrazoxane Hydrochloride), Ziv-Aflibercept, Zofran
(Ondansetron Hydrochloride), Zoladex (Goserelin Acetate), Zoledronic Acid, Zolinza (Vorinostat), Zometa (Zoledronic Acid), Zydelig (Idelalisib), Zykadia (Ceritinib) and Zytiga (Abiraterone Acetate). In some embodiments the chemotherapeutic agent is selected from one or more of: Melphalan,
Vincristine (Oncovin), Cyclophosphamide (Cytoxan), Etoposide (VP-16), Doxorubicin (Adriamycin), Liposomal doxorubicin (Doxil), Bendamustine (Treanda), Thalidomide (Thalomid), Lenalidomide
(Revlimid), Pomalidomide (Pomalyst), Bortezomib (Velcade), Bortezomib (Velcade), Ixazomib (Ninlaro), Panobinostat (Farydak), Daratumumab (Darzalex), Elotuzumab (Empliciti) and Interferon.
In some embodiments the treatment may comprise administration of a corticosteroid, e.g.
dexamethasone and/or prednisone.
Multiple doses of the producing an antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof), cell or composition may be provided. One or more, or each, of the doses may be accompanied by simultaneous or sequential administration of another therapeutic agent.
Multiple doses may be separated by a predetermined time interval, which may be selected to be one of 1 , 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 , 22, 23, 24, 25, 26, 27, 28, 29, 30, or 31 days, or 1 , 2, 3, 4, 5, or 6 months. By way of example, doses may be given once every 7, 14, 21 or 28 days (plus or minus 3, 2, or 1 days).
Methods of detection
The invention also provides the articles of the present invention for use in methods for detecting, localizing or imaging CD47, BCMA and/or TACI, or cells expressing CD47, BCMA and/or TACI.
The antigen-binding molecules described herein may be used in methods that involve the antigen-binding molecule to CD47, BCMA and/or TACI. Such methods may involve detection of the bound complex of the antigen-binding molecule and CD47, BCMA and/or TACI.
As such, a method is provided, comprising contacting a sample containing, or suspected to contain, CD47, BCMA and/or TACI, and detecting the formation of a complex of the antigen-binding molecule and CD47, BCMA and/or TACI. Also provided is a method comprising contacting a sample containing, or suspected to contain, a cell expressing CD47, BCMA and/or TACI, and detecting the formation of a complex of the antigen-binding molecule and a cell expressing CD47, BCMA and/or TACI.
Suitable method formats are well known in the art, including immunoassays such as sandwich assays, e.g. ELISA. The methods may involve labelling the antigen-binding molecule, or target(s), or both, with a detectable moiety, e.g. a fluorescent label, phosphorescent label, luminescent label, immuno-detectable label, radiolabel, chemical, nucleic acid or enzymatic label as described herein. Detection techniques are well known to those of skill in the art and can be selected to correspond with the labelling agent.
Methods of this kind may provide the basis of methods for the diagnostic and/or prognostic evaluation of a disease or condition, e.g. a cancer. Such methods may be performed in vitro on a patient sample, or following processing of a patient sample. Once the sample is collected, the patient is not required to be present for the in vitro method to be performed, and therefore the method may be one which is not practised on the human or animal body. In some embodiments the method is performed in vivo.
Detection in a sample may be used for the purpose of diagnosis of a disease/condition (e.g. a cancer), predisposition to a disease/condition, or for providing a prognosis (prognosticating) for a
disease/condition, e.g. a disease/condition described herein. The diagnosis or prognosis may relate to an existing (previously diagnosed) disease/ condition.
Such methods may involve detecting or quantifying one or more of: CD47, cells expressing CD47, BCMA, cells expressing BCMA, TACI, or cells expressing TACI e.g. in a patient sample. Where the method comprises quantifying the relevant factor, the method may further comprise comparing the determined amount against a standard or reference value as part of the diagnostic or prognostic evaluation. Other diagnostic/prognostic tests may be used in conjunction with those described herein to enhance the accuracy of the diagnosis or prognosis or to confirm a result obtained by using the tests described herein.
A sample may be taken from any tissue or bodily fluid. The sample may comprise or may be derived from: a quantity of blood; a quantity of serum derived from the individual’s blood which may comprise the fluid portion of the blood obtained after removal of the fibrin clot and blood cells; a tissue sample or biopsy; pleural fluid; cerebrospinal fluid (CSF); or cells isolated from said individual. In some
embodiments, the sample may be obtained or derived from a tissue or tissues which are affected by the disease/condition (e.g. tissue or tissues in which symptoms of the disease manifest, or which are involved in the pathogenesis of the disease/condition).
The present invention also provides methods for selecting/stratifying a subject for treatment with a CD47, BCMA and/or TACI-targeted agent. In some embodiments a subject is selected for treatment/prevention in accordance with the invention, or is identified as a subject which would benefit from such
treatment/prevention, based on detection/quantification of CD47, BCMA and/or TACI, or cells expressing CD47, BCMA and/or TACI, e.g. in a sample obtained from the individual.
Subjects
The subject in accordance with aspects the invention described herein may be any animal or human. The subject is preferably mammalian, more preferably human. The subject may be a non-human mammal, but is more preferably human. The subject may be male or female. The subject may be a patient. A subject may have been diagnosed with a disease or condition requiring treatment (e.g. a cancer), may be suspected of having such a disease/condition, or may be at risk of developing/contracting such a disease/condition.
In embodiments according to the present invention the subject is preferably a human subject. In some embodiments, the subject to be treated according to a therapeutic or prophylactic method of the invention herein is a subject having, or at risk of developing, a cancer. In embodiments according to the present invention, a subject may be selected for treatment according to the methods based on characterisation for certain markers of such disease/condition. Kits
In some aspects of the invention described herein a kit of parts is provided. In some embodiments the kit may have at least one container having a predetermined quantity of an antigen-binding molecule,
5 polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof), cell or
composition described herein.
In some embodiments, the kit may comprise materials for producing an antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof), cell or 10 composition described herein.
The kit may provide the antigen-binding molecule, polypeptide, CAR, nucleic acid (or plurality thereof), expression vector (or plurality thereof), cell or composition together with instructions for administration to a patient in order to treat a specified disease/condition.
15
In some embodiments the kit may further comprise at least one container having a predetermined quantity of another therapeutic agent (e.g. anti-infective agent or chemotherapy agent). In such embodiments, the kit may also comprise a second medicament or pharmaceutical composition such that the two medicaments or pharmaceutical compositions may be administered simultaneously or separately 20 such that they provide a combined treatment for the specific disease or condition. The therapeutic agent may also be formulated so as to be suitable for injection or infusion to a tumor or to the blood.
Sequence identity
As used herein,“sequence identity” refers to the percent of nucleotides/amino acid residues in a subject 25 sequence that are identical to nucleotides/amino acid residues in a reference sequence, after aligning the sequences and, if necessary, introducing gaps, to achieve the maximum percent sequence identity between the sequences. Pairwise and multiple sequence alignment for the purposes of determining percent sequence identity between two or more amino acid or nucleic acid sequences can be achieved in various ways known to a person of skill in the art, for instance, using publicly available computer software 30 such as ClustalOmega (Soding, J. 2005, Bioinformatics 21 , 951-960), T-coffee (Notredame et al. 2000, J.
Mol. Biol. (2000) 302, 205-217), Kalign (Lassmann and Sonnhammer 2005, BMC Bioinformatics, 6(298)) and MAFFT (Katoh and Standley 2013, Molecular Biology and Evolution, 30(4) 772-780 software. When using such software, the default parameters, e.g. for gap penalty and extension penalty, are preferably used.
35
Sequences
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The invention includes the combination of the aspects and preferred features described except where such a combination is clearly impermissible or expressly avoided.
The section headings used herein are for organizational purposes only and are not to be construed as limiting the subject matter described.
Aspects and embodiments of the present invention will now be illustrated, by way of example, with reference to the accompanying figures. Further aspects and embodiments will be apparent to those skilled in the art. All documents mentioned in this text are incorporated herein by reference.
Throughout this specification, including the claims which follow, unless the context requires otherwise, the word“comprise,” and variations such as“comprises” and“comprising,” will be understood to imply the inclusion of a stated integer or step or group of integers or steps but not the exclusion of any other integer or step or group of integers or steps.
It must be noted that, as used in the specification and the appended claims, the singular forms“a,”“an,” and“the” include plural referents unless the context clearly dictates otherwise. Ranges may be expressed herein as from“about” one particular value, and/or to“about” another particular value. When such a range is expressed, another embodiment includes from the one particular value and/or to the other particular value. Similarly, when values are expressed as approximations, by the use of the antecedent“about,” it will be understood that the particular value forms another embodiment.
Where a nucleic acid sequence is disclosed herein, the reverse complement thereof is also expressly contemplated.
Methods described herein may preferably performed in vitro. The term“in vitro” is intended to encompass procedures performed with cells in culture whereas the term“in vivo” is intended to encompass procedures with/on intact multi-cellular organisms.
Brief Description of the Figures
Embodiments and experiments illustrating the principles of the invention will now be discussed with reference to the accompanying figures.
Figure 1. Ribbon diagram showing the 3D structure of interacting SIPRPa and CD47 domains, with regions used as immunogens for raising anti-CD47 antibodies overlain with spheres.
Figure 2. Schematic representations of the anti-CD47 lgG1 , bispecific anti-BCMA, anti-CD47 (Cross)-lgGI(KiHs-s) and bispecific anti-CD47, anti-BCMA scFv-lgGI(KiHs-s) formats.
Figures 3A and 3B. Sensorgrams showing affinity of binding of anti-CD47 antibodies to human CD47. (3A) Sensorgram for 1-1-A1. (3B) Sensorgram for 1-1-A1_BM.
Figures 4A to 4C. Histograms showing staining of CD47-expressing cells by anti-CD47 antibodies as determined by flow cytometry. (4A) Histogram showing staining of HEK293T cells (which express CD47), or HEK293T-derived CD47 knockout cells, by anti-CD47 antibody clone 1-1-A1 or isotype control antibody. (4B) Histogram showing staining of HEK293T cells, or HEK293T-derived CD47 knockout cells, by anti-CD47 antibody clone 1-1-A1_BM or isotype control antibody. (4C) Histogram showing staining of HEK293T cells, or HEK293T-derived CD47 knockout cells, by anti-CD47 antibody clone B6H12 or isotype control antibody.
Figure 5. Bar chart showing binding to human CD47 and human BCMA by different antigen-binding molecules, as determined by ELISA.
Figure 6. Graph showing binding to human CD47 (hCD47) and rhesus macaque CD47 (RhCD47) by the indicated antigen-binding molecules, as determined by ELISA.
Figure 7. Bar chart showing inhibition of interaction between human CD47 and human SIRPa by antigen-binding molecules as determined by ELISA.
Figure 8. Histogram showing phagocytosis of CFSE-labelled Raji cells by macrophages in the presence of the indicated antigen-binding molecules or PBS, as determined by flow cytometry. Figures 9A to 9C. Fluorescence microscopy images and bar chart showing phagocytosis of CFSE- labelled HL-60 cells by macrophages in the presence of the indicated antigen-binding molecules. (9A and 9B) Images showing binding phagocytosis in the presence of (9A) isotype control antibody (negative control) and (9B) anti-CD47 clone 1-1-A1_BM IgG 1. (9C) Bar chart summarising phagocytic indices for CFSE-labelled HL-60 cells by macrophages in the presence of the indicated antigen-binding molecules
Figures 10A and 10B. Images showing the results of analysis of hemagglutination by the indicated antigen-binding molecules. Positive control = anti-red blood cells antibody, negative control = isotype control antibody. (10A) and (10B) show results from different experiments.
Figures 11A to 11C. Graphs showing tumor size and survival in a Raji cell CDX NOD/SCID mouse model at different time points. (11 A) Graph showing mean tumor volume ± standard deviation for untreated and anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) treated groups. (11B)
Graph showing tumor volumes for individual untreated and anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) treated mice. (11C) Graph showing survival of mice in untreated and anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) treated groups over time.
Figures 12A and 12B. Sensorgrams showing affinity of binding of (12A) anti-CD47 antibody 1-1-A1_BM to human CD47, and (12B) anti-BCMA antibody J6M0 to human BCMA.
Figures 13A and 13B. Graphs showing the first derivative of the raw data obtained for Differential Scanning Fluorimetry analysis of thermostability of J6M0-lgG1 , anti-CD47 clone 1-1-A1_BM IgG 1 (CD47), and bispecific anti-CD47 clone 1-1-A1_BM, J6M0-lgG1(Duobody) (J6M0/CD47_Duobody). 13A and 13B show the results obtained in two different experiments.
Figure 14. Graph showing binding to human CD47 by the indicated antigen-binding molecules, as determined by ELISA.
Figure 15. Graph showing binding to human VISTA by the indicated antigen-binding molecules, as determined by ELISA.
Figures 16A to 16H. Sensorgrams showing affinity of binding of anti-CD47 antibodies to human CD47. (16A) Sensorgram for 1 1A1 BM. (16B) Sensorgram for 11A1 H3. (16C) Sensorgram for 11A1 H5. (16D) Sensorgram for 11A1 H6. (16E) Sensorgram for 11A1 H7. (16F) Sensorgram for 1 1A1 H9. (16G)
Sensorgram for 11A1 H10. (16H) Sensorgram for 11A1 H11.
Figure 17. Graph showing inhibition of interaction between human CD47 and SIRPa by the indicated antigen-binding molecules, as determined by ELISA. Figure 18. Images showing the results of analysis of hemagglutination by the indicated antigenbinding molecules. Positive control = anti-red blood cells antibody (ANTI RBC), negative control = isotype matched antibody specific for an irrelevant target antigen (Irrelevant Ag), and buffer only (BUFFER).
Figures 19A to 19D. Histograms showing staining of MM.1S cells, H929 cells, U226 cells, 8226 cells and RAJI cells by (19A) anti-CD47 antibody clone B6H12, (19B) anti-BCMA antibody clone J6M0, (19C) anti-BCMA antibody clone REA315 and (19D) anti-TACI antibody 1 1937-R006, as determined by flow cytometry.
Figures 20A to 20D. Graphs showing binding of J6M0 and rabbit anti-TACI (20A) to human CD47, (20B) cynomolgus macaque CD47, (20C) human TACI and (20D) irrelevant antigen, as determined by ELISA.
Figures 21 A to 21 D. Graphs showing binding of the indicated antigen-binding molecules to (20A) human TACI, (20B) human BCMA, (20C) human CD47, and (20D) an irrelevant antigen, as determined by ELISA.
Figures 22A and 22B. Bar charts showing simultaneous binding to (22A) human CD47 and human BCMA, and (22B) human CD47 and human TACI, by the indicated antigen-binding molecules, as determined by ELISA.
Examples
In the following Examples, the inventors describe the generation of novel CD47-specific antibody clones targeted to specific regions of interest in the CD47 molecule, generation of novel anti-CD47, anti-BCMA binding molecules, the biophysical and functional characterisation and the therapeutic evaluation of these antigen-binding molecules.
Example 1 : CD47 target design and anti-CD47 antibody hvbridoma production
The inventors selected two regions in the Ig-like V region (SEQ ID NO:9) of the extracellular region 1 of human CD47 (SEQ ID NO: 10) for raising CD47-binding monoclonal antibodies. The inventors focussed on regions of CD47 known to be involved in the interaction between CD47 and SIRPa (Figure 1 ).
1.1 Hvbridoma production
Approximately 6 week old female BALB/c mice were obtained from InVivos (Singapore). Animals were housed under specific pathogen-free conditions and were treated in compliance with the Institutional Animal Care and Use Committee (IACUC) guidelines.
For hybridoma production, mice were immunized with proprietary mixtures of antigenic peptide for a total of 4 intraperitoneal injections with a 2 week interval between each injection. Antigen for immunizations included one of the following:
i) Up to 50 pg of synthetic peptide conjugated with KLH (China Peptides Co. Ltd, China) ii) Up to 50 pg of commercially available recombinant Fc-tagged human CD47 (Sinobiological Inc, China)
iii) Up to 20 x 10® isogenic cells overexpressing human CD47.
Prior to harvesting the spleen for fusion, mice were boosted with antigen mixture for three consecutive days. 24 h after the final boost total splenocytes were isolated and fused with the myeloma cell line P3X63.Ag8.653 (ATCC, USA), with PEG using ClonaCell-HY Hybridoma Cloning Kit, in accordance with the manufacturer’s instructions (Stemcell Technologies, Canada).
Fused cells were cultured in ClonaCell-HY Medium C (Stemcell Technologies, Canada) overnight at 37°C in a 5% CO2 incubator. The next day, fused cells were centrifuged and resuspended in 10 ml of
ClonaCell-HY Medium C and then gently mixed with 90 ml of semisolid methylcellulose-based ClonaCell- HY Medium D (StemCell Technologies, Canada) containing HAT components, which combines the hybridoma selection and cloning into one step.
The fused cells were then plated into 96 well plates and allowed to grow at 37 °C in a 5% CO2 incubator. After 7-10 days, single hybridoma clones were isolated and antibody producing hybridomas were selected by screening the supernatants by Enzyme-linked immunosorbent assay (ELISA) and
Fluorescence-activated cell sorting (FACs).
1.2 Antibody variable region amplification and sequencing
Total RNA was extracted from hybridoma cells using TRIzol reagent (Life Technologies, Inc., USA) using manufacturer’s protocol. Double-stranded cDNA was synthesized using SMARTer RACE 573' Kit (Clontech™, USA) in accordance with the manufacturer’s instructions. Briefly, 1 pg total RNA was used to generate full-length cDNA using 5 -RACE CDS primer (provided in the kit), and the 5’ adaptor (SMARTer II A primer) was then incorporated into each cDNA according to manufacturer's instructions. cDNA synthesis reactions contained: 5X First-Strand Buffer, DTT (20 mM), dNTP Mix (10 mM), RNase Inhibitor (40 U/pl) and SMARTScribe Reverse Transcriptase (100 U/pl).
The race-ready cDNAs were amplified using SeqAmp DNA Polymerase (Clontech™, USA). Amplification reactions contained SeqAmp DNA Polymerase, 2X Seq AMP buffer, 5' universal primer provided in the 5’ SMARTer Race kit, that is complement to the adaptor sequence, and 3' primers that anneal to respective heavy chain or light chain constant region primer. The 5’ constant region were designed based on previously reported primer mix either by Krebber et al. J. Immunol. Methods 1997; 201 : 35-55, Wang et al. Journal of Immunological Methods 2000, 233; 167-177 or Tiller et al. Journal of Immunological Methods 2009; 350:183-193. The following thermal protocol was used: pre-denature cycle at 94°C for 1 min; 35 cycles of 94°C, 30 s, 55°C, 30 s and 72°C, 45 s; final extension at 72°C for 3 min.
The resulting VH and VL PCR products, approximately 550 bp, were cloned into pJET1.2/blunt vector using CloneJET PCR Cloning Kit (Thermo Scientific, USA) and used to transform highly competent E.coli DH5a. From the resulting transformants, plasmid DNA was prepared using Miniprep Kit (Qiagene, Germany) and sequenced. DNA sequencing was carried out by AITbiotech. These sequencing data were analyzed using the international IMGT (ImMunoGeneTics) information system (LeFranc et al., Nucleic Acids Res. (2015) 43 (Database issue):D413-22) to characterize the individual CDRs and framework sequences. The signal peptide at 5’ end of the VH and VL was identified by SignalP (v 4.1 ; Nielsen, in Kihara, D (ed): Protein Function Prediction (Methods in Molecular Biology vol. 1611 ) 59-73, Springer 2017).
Three monoclonal anti-CD47 antibody clones were selected for further development: 1-1 -A1 , 5-48-A6 and 5-48-D2.
A humanised version of antibody clone 1-1-A1 was also prepared according to standard methods by cloning the CDRs of antibody clone 1-1-A1 into VH and VL comprising human antibody framework regions. This antibody clone was designated antibody clone 1-1-A1_BM.
Figure imgf000117_0001
Example 2: Antibody production and purification
2.1 Cloning VH and VL into Expression Vectors:
DNA sequence encoding the heavy and light chain variable regions of the anti-CD47 antibody clones and the anti-BCMA antibody clone J6M0 (VH = SEQ ID NO:102, VL = SEQ ID NO:110) were subcloned into the pFUSE-CHIg-hG1 and pFUSE2ss-CLIg-hk (InvivoGen, USA) eukaryotic expression vectors for construction of human-mouse chimeric antibodies. Human IgG 1 constant region encoded by pFUSE- CHIg-hG1 comprises the substitutions D356E, L358M (positions numbered according to EU numbering) in the CH3 region relative to Human lgG1 constant region (IGHG1 ; UniProt:P01857-1 , v1 ). pFUSE2ss- CLIg-hk encodes human IgG 1 light chain kappa constant region (IGCK; UniProt: P01834-1 , v2).
Variable regions along with the signal peptides were amplified from the cloning vector using SeqAmp enzyme (Clontech™, USA) following the manufacturer’s protocol. Forward and reverse primers having 15-20bp overlap with the appropriate regions within VH or VL plus 6 bp at 5’ end as restriction sites were used. The DNA insert and the pFuse vector were digested with restriction enzyme recommended by the manufacturer to ensure no frameshift was introduced (e.g., EcoRI and Nhel for VH, Agel and BsiWI for VL,) and ligated into its respective plasmid using T4 ligase enzyme (Thermo Scientific, USA). The molar ratio of 3:1 of DNA insert to vector was used for ligation.
For the generation of the bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) molecule, DNA sequence encoding CK (with N-terminal‘RT substituted for‘AS’) was cloned in place of the region encoding CH1 (and the N-terminal‘EPKSC’ of the CH1-CH2 hinge region) in a vector encoding anti-CD47 clone 1-1-A1_BM VH-human lgG1 CH1-CH2-CH3 comprising the substitutions T366S, L368A, Y407V and Y349C. The amino acid sequence of the polypeptide encoded by the resulting construct is shown in SEQ ID NO: 141.
For the light chain of the CrossFab arm, DNA sequence encoding CH1 region (with additional‘SS’ at the N-terminus of the CH1 sequence, and with additional‘EPKSC’ at the C-terminus) was cloned in place of DNA sequence encoding CK in a vector encoding anti-CD47 clone 1-1-A1_BM VL-CK. The amino acid sequence of the polypeptide encoded by the resulting construct is shown in SEQ ID NO: 142.
For the heavy chain of the BCMA-binding arm, DNA sequence encoding VH region of anti-BCMA antibody clone J6M0 was cloned into a vector encoding human IgG 1 CH1-CH2-CH3 comprising the substitutions T366W and S354C. The amino acid sequence of the polypeptide encoded by the resulting construct is shown in SEQ ID NO:140.
For the generation of the bispecific anti-CD47 clone 1-1-A1_BM, anti-BCMA scFv-lgGI (KiHs-s) molecule, DNA sequence encoding VH region of anti-CD47 antibody clone 1-1-A1_BM was cloned into a vector encoding human IgG 1 CH1-CH2-CH3 comprising the substitutions T366W and S354C. The amino acid sequence of the polypeptide encoded by the resulting construct is shown in SEQ ID NO:143. DNA sequence encoding scFv (VL-(G4S)3 linker-VH) of anti-BCMA antibody clone J6M0 antibody clone and the additional sequence‘GRRPKSA’ at the C-terminal was cloned in place of the region encoding CH1 , and ‘EPKSC’ of the CH1-CH2 hinge region, in a vector encoding human IgG 1 CH1-CH2-CH3 comprising the substitutions T366S, L368A, Y407V and Y349C. The amino acid sequence of the polypeptide encoded by the resulting construct is shown in SEQ ID NO: 144.
2.2 Expression of antibodies in mammalian cells
Antibodies were expressed using either 1 ) Expi293 Transient Expression System Kit (Life Technologies, USA), or 2) HEK293-6E Transient Expression System (CNRC-NRC, Canada) following the
manufacturer’s instructions.
1 ) Expi293 Transient Expression System:
Cell line maintenance:
HEK293F cells (Expi293F) were obtained from Life Technologies, Inc (USA). Cells were cultured in serum-free, protein-free, chemically defined medium (Expi293 Expression Medium, Thermo Fisher, USA), supplemented with 50 lU/ml penicillin and 50 pg/ml streptomycine (Gibco, USA) at 37°C, in 8% CO2 and 80% humidified incubators with shaking platform.
Transfection:
Expi293F cells were transfected with expression plasmids using ExpiFectamine 293 Reagent kit (Gibco, USA) according to its manufacturer’s protocol. Briefly, cells at maintenance were subjected to a media exchange to remove antibiotics by spinning down the culture, cell pellets were re-suspended in fresh media without antibiotics at 1 day before transfection. On the day of transfection, 2.5 x 106/ml of viable cells were seeded in shaker flasks for each transfection. DNA-ExpiFectamine complexes were formed in serum-reduced medium, Opti-MEM (Gibco, USA), for 25 min at room temperature before being added to the cells. Enhancers were added to the transfected cells at 16-18 h post transfection. An equal amount of media was topped up to the transfectants at day 4 post-transfection to prevent cell aggregation.
Transfectants were harvested at day 7 by centrifugation at 4000 x gfor 15 min, and filtered through 0.22 pm sterile filter units.
2) HEK293-6E Transient Expression System
Cell line maintenance:
HEK293-6E cells were obtained from National Research Council Canada. Cells were cultured in serum- free, protein-free, chemically defined Freestyle F17 Medium (Invitrogen, USA), supplemented with 0.1 % Kolliphor-P188 and 4 mM L-Glutamine (Gibco, USA) and 25 pg/ml G-418 at 37°C, in 5% CO2 and 80% humidified incubators with shaking platform.
Transfection:
HEK293-6E cells were transfected with expression plasmids using PEIproTM (Polyplus, USA) according to its manufacturer’s protocol. Briefly, cells at maintenance were subjected to a media exchange to remove antibiotics by centrifugation, cell pellets were re-suspended with fresh media without antibiotics at 1 day before transfection. On the day of transfection, 1.5-2 x 10® cells/ml of viable cells were seeded in shaker flasks for each transfection. DNA and PEIproTM were mixed to a ratio of 1 : 1 and the complexes were allowed to form in F17 medium for 5 min at RT before adding to the cells. 0.5% (w/v) of Tryptone N1 was fed to transfectants at 24-48 h post transfection. Transfectants were harvested at day 6-7 by centrifugation at 4000 x gfor 15 min and the supernatant was filtered through 0.22 pm sterile filter units.
Cells were transfected with vectors encoding the following combinations of polypeptides:
Figure imgf000119_0001
Figure imgf000120_0001
Representations of the anti-CD47 lgG1 , bispecific anti-BCMA, anti-CD47 (Cross)-lgGI(KiHs-s) and bispecific anti-CD47, anti-BCMA scFv-lgGI(KiHs-s) formats are shown in Figure 2. 2.3 Antibody Purification
Affinity purification, buffer exchange and storage:
Antibodies secreted by the transfected cells into the culture supernatant were purified using liquid chromatography system AKTA Start (GE Healthcare, UK). Specifically, supernatants were loaded onto HiTrap Protein G column (GE Healthcare, UK) at a binding rate of 5 ml/m in, followed by washing the column with 10 column volumes of washing buffer (20 mM sodium phosphate, pH 7.0). Bound mAbs were eluted with elution buffer (0.1 M glycine, pH 2.7) and the eluents were fractionated to collection tubes which contain appropriate amount of neutralization buffer (1 M Tris, pH 9). Neutralised elution buffer containing purified mAb were exchanged into PBS using 30K MWCO protein concentrators (Thermo Fisher, USA) or 3.5K MWCO dialysis cassettes (Thermo Fisher, USA). Monoclonal antibodies were sterilized by passing through 0.22 pm filter, aliquoted and snap-frozen in -80°C for storage.
2.4 Antibody-purity analysis
Size exclusion chromatography (SEC):
Antibody purity was analyzed by size exclusion chromatography (SEC) using HiLoad 16/600 Superdex 200 pg column (GE Healthcare, UK) on a AKTA Explorer liquid chromatography system (GE Healthcare,
UK). Protein samples are injected to SEC column at concentrations ranging between 0.2-1.5 mg/ml and 1 x PBS was pumped to the column at a flow rate of 1 ml/min. Proteins were eluted according to their molecular weights.
Sodium-Dodecyl Sulfate Polyacrylamide gel electrophoresis (SDS-PAGE):
Antibody purity was also analysed by SDS-PAGE under reducing and non-reducing conditions according to standard methods. Briefly, 4%-20% TGX protein gels (Bio-Rad, USA) were used to resolve proteins using a Mini-Protean Electrophoresis System (Bio-Rad, USA). For non-reducing condition, protein samples were denatured by mixing with 2x Laemmli sample buffer (Bio-Rad, USA) and boiled at 95°C for 5-10 min before loading to the gel. For reducing conditions, 2x sample buffer containing 5% of b- mercaptoethanol (bME), or 40 mM DTT (dithiothreitol) was used. Electrophoresis was carried out at a constant voltage of 150V for 1 h in SDS running buffer (25 mM Tris, 192 mM glycine, 1 % SDS, pH 8.3).
Example 3: Biophysical characterisation
3.1 Global affinity study using BLITz system
Bio-Layer Interferometry (BLI) experiments were performed using a single channel BLItz system
(ForteBio, Menlo Park, CA) using Anti-human immunoglobulin G (IgG) Fc (AHC) coated biosensor tips (Pall ForteBio, Menlo Park, CA) for capturing human IgGs. Biosensors were first hydrated for at least 10 m in assay buffer (phosphate buffered saline) followed by buffer baseline for 30 s and loading of the human IgGs onto the biosensor tips at concentrations ranging from 25-50 nM for 120 s. The tips were then washed briefly for 30 s with the assay buffer to remove nonspecifically bound proteins or unbound IgGs for obtaining a second buffer baseline. The association phase of the IgGs with antigens (500 nM- OnM) was set up at 120 s which was followed by a dissociation phase (assay buffer alone) for 120 s. All the BLITz runs were measured at room temperature at a stirring speed of 1000 rpm and AHC biosensors were regenerated using 10 mM of glycine (pH 2.7) after the assay. Binding affinity between the immobilized antibodies on the AHC sensors and human CD47 were determined by analyzing the binding kinetic curves using the software BLItz Pro. All the sensorgrams were reference subtracted and globally fitted into a 1 :1 model which analysed the binding curves at different concentrations of antigens and generated kinetic constants (KD/Ka/Kd) for the globally fitted data. All the binding curves were subjected to step correction which corrects the misalignment between association and dissociation steps and only the curves with R2 values greater than 0.9 were used for analysis.
The anti-CD47 antibody clones in lgG1 format were analyzed for binding affinity to human CD47.
Representative sensorgrams for the analysis are shown in Figures 3A and 3B. Clone 1-1 -A1 was found to have a KD of 9 nM, and 1-1-A1_BM was found to have a KD of 16.1 nM.
In a separate experiment, the affinity of 1-1-A1_BM ([1] of Example 2.2) for human CD47 was analysed by BLI using an anti-Penta-HIS (HIS1 K) Octet sensors. Buffer baseline was obtained for 30 s, and then sensors were loaded with his-tagged human CD47 (1.2 mM) for 120 s. A second buffer baseline was obtained for 60 s, followed by an association phase with 1-1-A1_BM at concentrations ranging from 15.6 M to 500 nM for 120 s, and a dissociation phase in buffer for 120 s. The results are shown in Figure 12A. 1-1-A1_BM was found to bind to human CD47 in this assay with a KD = 10.4 nM.
In a separate experiment, the affinity of anti-BCMA (clone J6M0; [5] of Example 2.2) for human BCMA was analysed by BLI using an anti-HIS1 K Octet sensors. Buffer baseline was obtained for 30 s, and then sensors were loaded with his-tagged human BCMA (800 nM) for 120 s. A second buffer baseline was obtained for 60 s, followed by an association phase with J6M0 at concentrations ranging from 15.6 M to 500 nM for 120 s, and a dissociation phase in buffer for 600 s.
The results are shown in Figure 12B. Anti-BCMA antibody J6M0 was found to bind to human BCMA in this assay with a KD = 0.65 nM.
3.2 Analysis of cell surface antigen-binding by flow cytometry
HEK293T cells (which express high levels of CD47) and cells of a HEK293T cell-derived CD47 knockout cell line were incubated with 20 pg/ml of anti-CD47 antibody or isotype control antibody at 4°C for 1 hr. The anti-CD47 antibody clone B6H12 (Santa Cruz Biotechnology, cat no. sc-12730) was included in the analysis as a positive control.
The cells were washed thrice with FACS buffer (PBS with 5mM EDTA and 0.5% BSA) and resuspended in FITC-conjugated anti-FC antibody (Invitrogen, USA) for 40 min at 2-8°C. Cells were washed again and resuspended in 200 pl_ of FACS flow buffer (PBS with 5mM EDTA) for flow cytometric analysis using MACSOuant 10 (Miltenyi Biotec, Germany). After acquisition, all raw data were analyzed using Flowlogic software. Cells were gated using forward and side scatter profile and Median of Fluorescence Intensity (MFI) value was determined for native and overexpressing cell populations.
The anti-CD47 antibodies were shown to bind to human CD47 with high specificity. Figures 4A and 4B show the results obtained using clones 1-1-A1 and 1-1-A1_BM, and Figure 4C shows results obtained using the commercially-available anti-CD47 antibody clone B6H12 (positive control).
3.3 ELISAs for determining antibody specificity
ELISAs were used to determine the binding specificity of the antibodies. The antibodies were tested against target peptide and protein as well as respective mouse, rat and monkey homologues (Sino Biological Inc., China).
ELISAs were carried out according to standard protocols. Briefly, 96-well plates (Nunc, Denmark) were coated with 1 pg/ml of Fc-tagged human CD47 in phosphate-buffered saline (PBS) for 16 h at 4°C. After blocking for 1 h with 1 % BSA in Tris buffer saline (TBS) at room temperature, the candidate antigenbinding molecule was serially diluted with the highest cone being 10 pg/ml and added to the plate, in the presence of His-tagged BCMA. Post 1 h incubation at RT, plates were washed three times with TBS containing 0.05% Tween 20 (TBS-T) and were then incubated with a HRP-conjugated anti-His antibody (Life Technologies, Inc., USA) for 1 h at room temperature. After washing, plates were developed with colorimetric detection substrate 3,3',5,5'-tetramethylbenzidine (Turbo-TMB; Pierce, USA). The reaction was stopped with 2M H2SO4, and OD was measured at 450 nM.
The following antigen-binding molecules were analysed in the experiment:
• Bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI (KiHs-s) ([6] of Example 2.2)
• Bispecific anti-CD47 clone 1-1-A1_BM, anti-BCMA scFv-lgGI (KiHs-s) - ([7] of Example 2.2)
• anti-CD47 clone 1-1-A1_BM lgG1 ([1 ] of Example 2.2)
• anti-BCMA lgG1 ([5] of Example 2.2)
The results are shown in Figure 5. Binding to CD47 and BCMA was demonstrated for the anti-CD47, anti- BCMA bispecific antigen-binding molecules provided in the different formats.
3.4 Analysis of binding to non-human primate CD47
In a further ELISA, binding to rhesus macaque CD47 (RhCD47) was compared to binding to human CD47 (hCD47) for anti-CD47 clone 1-1-A1_BM lgG1 ([1] of Example 2.2)
The results are shown in Figure 6.
Example 4: Functional characterisation
4.1 Analysis of ability to block CD47-SIRPa interaction
96-well plates (Nunc, Denmark) were coated with 1 pg/ml of untagged human CD47 protein
(Sinobiological Inc, China) in 1 X PBS for 16 h at 4°C. After blocking for 1 h with 1 % BSA in TBS at room temperature, 1 pg /ml of SIRPa/human His tagged fusion protein (Sinobiological Inc, China) was added either in the absence of antibody, or in the presence of increasing concentrations of anti-CD47 antibody at room temperature for 1 hr. Plates were subsequently washed three times with TBS-T and incubated with an HRP-conjugated anti-his secondary antibody (Thermo Scientific, USA) for 1 h at room
temperature. After washing, plates were developed with colorimetric detection substrate Turbo-TMB (Pierce, USA). The reaction was stopped with 2M H2SO4, and OD was measured at 450 nM.
Percent inhibition of CD47-SIRPa interaction calculated relative to the signal in the absence of SIRPa (100%).
Inhibition of interaction between CD47 and SIRPa was evaluated for the following antigen-binding molecules:
• anti-CD47 clone 1-1 -A1 IgG 1 ([2] of Example 2.2)
• anti-CD47 clone 5-48-A6 IgG 1 ([3] of Example 2.2)
• anti-CD47 clone 5-48-D2 lgG1 ([4] of Example 2.2)
The results are shown in Figure 7. Several of the anti-CD47 binding antibodies were found to be potent inhibitors of CD47-SIRPa interaction. 4.2 In vitro phagocytosis assay
In vitro phagocytosis assays were performed according to standard protocols. Briefly, Raji cells were cultured in RPMI-1640 supplemented with 10% fetal bovine serum (FBS) and 1 % Pen/Strep at 37°C in a 5 % CO2 incubator. HL-60 or Raji cells were then harvested and CFSE-labelled using CellTrace CFSE Cell Proliferation Kit (Thermo Scientific, USA), in accordance with the manufacturer’s protocol. The labelled cells were then incubated with human peripheral blood-derived macrophages (Stemcell Technologies, Canada) in the presence of 20 pg/ml of anti-CD47 antibody, or an isotype control antibody for 2 h at 37°C. Cells were washed thrice with 1X PBS to remove all the non-phagocytosed labelled cells and resuspended in 200 pl_ of FACS flow buffer (PBS with 5 mM EDTA) for flow cytometric analysis using MACSQuant 10 (Miltenyi Biotec, Germany). After acquisition, all raw data were analyzed using Flowlogic software. Cells were gated using forward and side scatter profile and percentage of the engulfed effector cells were calculated.
In a first experiment, anti-CD47 clone 1-1-A1_BM lgG1 ([1] of Example 2.2) and anti-CD47 antibody clone B6H12 (Santa Cruz Biotechnology, cat no. sc-12730) were analysed for their ability to promote phagocytosis of CSFE-labelled Raji cells by macrophages, compared to a negative control condition in which PBS was added instead of antibodies.
The results are shown in Figure 8. Anti-CD47 clone 1-1-A1_BM IgG 1 was found to be extremely potent at promoting phagocytosis of Raji cells by macrophages.
In a separate experiment, antigen-binding molecules were analysed for their ability to promote phagocytosis of CSFE-labelled HL-60 cells by macrophages, as determined by fluorescence microscopy. Phagocytic index was calculated as the number of engulfed CFSE-labelled HL-60 cells per phagocyte, for 200 cells using the fluorescence microscope.
The anti-CD47 clone 1-1-A1_BM lgG1 ([1] of Example 2.2) was compared to an isotype control condition (negative control).
The results are shown in Figures 9A to 9C. Anti-CD47 clone 1-1-A1_BM lgG1 was shown to be potent at inducing phagocytosis of HL-60 cells by macrophages.
4.3 In vitro hemagglutination assay
To evaluate the hemagglutinating capacity of the test antigen-binding molecules, human RBCs were prepared by extensively washing blood with 1X PBS and centrifuging at 1500 rpm for 5 min, until a clear supernatant was observed. For the assay, 1 % human RBCs were incubated for 1 hr at RT in presence or absence of increasing concentrations of the test antigen-binding molecules in a round bottom 96 well plate. Presence of hemagglutination was accessed by the presence of non-settled RBCs, appearing as a haze compared to a punctuated red dot of non-hemagglutinated RBCs. In a first experiment, anti-CD47 clone 1-1-A1_BM lgG1 ([1] of Example 2.2) was analysed. An anti-red blood cells antibody (AbCam, cat. no. ab34858) condition was included as a positive control for hemagglutination, and an isotype control antibody condition was included as a negative control.
The results are shown in Figure 10A. The monospecific anti-CD47 antibody was found to induce hemagglutination of erythrocytes.
In a second experiment, the following antigen-binding molecules were analysed:
• anti-CD47 clone 1-1-A1_BM lgG1 ([1] of Example 2.2)
• Bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) ([6] of Example 2.2)
• anti-BCMA lgG1 ([5] of Example 2.2)
The anti-red blood cells antibody condition was included as a positive control, and an antigen binding molecule comprising regions specific for an irrelevant target antigen and‘buffer only’ conditions were included as negative controls.
The results are shown in Figure 10B. The bispecific anti-CD47, anti-BCMA antibody did not induce hemagglutination, even at a concentration of 400 pg/ml.
Example 5: Analysis in vivo
5.1 Subcutaneous In Vivo Validation Study Protocol
NOD SCID mice approximately 6-8 weeks old were housed under specific pathogen-free conditions and were treated in compliance with the Institutional Animal Care and Use Committee (IACUC) guidelines.
Raji were obtained from ATCC, USA. OCI-AML3. Raji lymphoma cells (6 x 106) were harvested and mixed with equal volumes of Matrigel (Corning, USA) prior to implantation. Cells were implanted subcutaneously into the right flank. 3 days post-implantation bispecific anti-BCMA, anti-CD47 clone 1-1- A1_BM (Cross)-lgGI(KiHs-s) ([6] of Example 2.2) was administered intraperitoneally at a dose of 10 mg/kg. Mice were treated every twice weekly for four weeks. The untreated control group received vehicle treatment at the same dose interval. Tumor volume was measured 3 times a week using a digital caliper and calculated using the formula [L x W2/2]. Study end point was reached once the tumors of the control arm measured >1.5 cm in length. Mouse survival was also monitored.
The results are shown in Figures 11A to 1 1C. Administration of the bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) (referred to in the Figure as‘HMBD-004B’) was found to delay disease onset, increase survival, and to cause a dramatic reduction in tumor growth (80.5% tumor growth inhibition at day 16) as compared to the untreated control group.
Tumor incidence in the untreated control group was 100% (6 out of 6 mice), whereas in the bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) treated group incidence was 66.6% (4/6 mice), suggesting that bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) is useful to prevent disease onset. 5.2 Treatment of Multiple Myeloma
First in human
Patients with MM unfit for chemotherapy aged 18-70 years (n = 3) are treated with a single dose of bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) ([6] of Example 2.2), calculated in accordance with safety-adjusted‘Minimal Anticipated Biological Effect Level’ (MABEL) approach. Patients are monitored for 28 days post-administration.
The patients are then evaluated according to the Common Terminology Criteria for Adverse Events (CTCAE), to determine the safety and tolerability bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s), and to determine the pharmacokinetics of the molecule.
Bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) is found to be safe and tolerable.
Dose escalation
Patients with MM unfit for chemotherapy aged 18-70 years (n = 18) are treated with bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) ([6] of Example 2.2) in accordance with a 3+3 model based escalation with overdose control (EWOC) dose escalation.
The patients are then evaluated according to the Common Terminology Criteria for Adverse Events (CTCAE), to determine the safety and tolerability of bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s), the pharmacokinetics of the molecule are determined and efficacy is evaluated by analysing MM burden by flow cytometry of patient blood samples.
Bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) ([6] of Example 2.2) is found to be safe and tolerable and able to reduce the number/proportion of MM cells.
Dose expansion
Patients aged 18-70 years (n = ~50) with MM unfit for chemotherapy are treated with anti-BCMA, anti- CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) ([6] of Example 2.2) in accordance with recommended phase II dose (RP2D) calculated according to the first in human and dose-escalation trial results.
The patients are then evaluated according to the Common Terminology Criteria for Adverse Events (CTCAE), to determine the safety and tolerability of bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s), and patients are evaluated for MM burden by flow cytometry of patient blood samples, minimal residual disease (MRD), progression-free survival (PFS) and thrombotic
thrombocytopenic purpura (TTP).
Bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI(KiHs-s) is found to be safe and tolerable, to be able to reduce the number/proportion of MM cells, and to increase progression-free survival. Example 6: Production and biophysical characterisation of a bispecific anti-CD47 clone 1-1-
A1 BM. anti-BCMA antigen-binding molecule in Duobodv format.
1-1-A1_BM IgG 1 antibody was produced by coexpression of 1-1-A1_BM VH-CH1-CH2-CH3(F405L) (SEQ ID NO:176) and 1-1-A1_BM VL-CK (SEQ ID NO:131 ) and subsequent purification, as described in Example 2.
Separately, anti-BCMA lgG1 antibody was produced by coexpression of anti-BCMA VH-CH1-CH2- CH3(K409R) (SEQ ID NO: 177) and anti-BCMA VL-CK (SEQ ID NO: 139) and subsequent purification, as described in Example 2.
The expressed 1-1-A1_BM IgG 1 and anti-BCMA lgG1 antibodies were then reduced to heavy and light chains by treatment with b-Mercaptoethanol, and subsequently allowed to re-associate, to form the following bispecific antigen-binding molecule:
Figure imgf000127_0001
Thermostability of the bispecific anti-CD47 clone 1-1-A1_BM, anti-BCMA-lgGI(Duobody) molecule was evaluated by Differential Scanning Fluorimetry.
Briefly, antibodies were diluted to 0.2 mg/ml in PBS, pH 7.2 and 2.5x SYPRO orange dye (Thermo Fisher). The fluorescence of SYPRO orange was measured in a melting curve experiment performed using a thermocycler (ABI 7500fast). Temperature was increased from 25°C to 95°C with a ramp rate of 1.2% corresponding to 1 °C/min. A melting curve was then plotted and melting temperatures (Tm) were determined from the first derivative plot of the melting curve.
The following antigen-binding molecules were analysed in the experiment:
• anti-CD47 clone 1-1-A1_BM IgG 1 ([1] of Example 2.2) - referred to in Figure 13 as‘CD47’.
• anti-BCMA lgG1 ([5] of Example 2.2) - referred to in Figure 13 as‘J6M0’. • Bispecific anti-CD47 clone 1-1-A1_BM, anti-BCMA-lgGI (Duobody) ([8] of Example 6) - referred to in Figure 13 as‘J6M0/CD47_Duobody’.
The first derivative of the raw data obtained for Differential Scanning Fluorimetry analysis is shown in Figures 13A and 13B. The Duobody format antigen-binding molecule was found to have comparable thermostability to monospecific lgG1 antibodies.
Tm1 and Tm2 values were determined for the different antigen-binding molecules from the data shown in Figure 13B:
· anti-CD47 clone 1-1-A1_BM IgG 1 : Tm1 = 68.7°C, Tm2 = 81 .9°C.
• anti-BCMA lgG1 : Tm1 = 68.6°C, Tm2 = 82.7°C.
• Bispecific anti-CD47 clone 1-1-A1_BM, anti-BCMA-lgG1 (Duobody): Tm1 = 68.4°C, Tm2 =
81.3°C. Example 7: Production of humanised versions of anti-CD47 clone 1-1 -A1
Humanised versions of anti-CD47 antibody clone 1-1-A1 were produced and purified as described in Example 2.
Figure imgf000128_0001
The CDRs of the humanised versions of anti-CD47 antibody clone 1-1 -A1 are shown below:
Figure imgf000129_0001
The FRs of the humanised versions of anti-CD47 antibody clone 1-1-A1 are shown below:
Figure imgf000130_0001
Figure imgf000131_0001
Example 8: Biophysical characterisation of humanised versions of anti-CD47 antibody clone 1- 1-A1
8.1 ELISAs for determining antibody specificity
The binding specificity of the humanised versions of anti-CD47 clone 1-1-A1 was analysed be ELISA.
96-well plates (Nunc, Denmark) were coated with 1 pg/ml of human CD47 or VISTA protein in PBS, for 1 h at room temperature. Plates were blocked for 1 h at room temperature with 1 % BSA in Tris buffer saline containing 0.05% Tween 20 (TBS-T). The test antigen-binding molecules were added at concentrations ranging from to 0.002 pg/ml to 200 pg/ml, and the plates were incubated at room temperature for 1 h. Plates were then washed three times with TBS-T, and were then incubated with a HRP-conjugated secondary antibody for 1 h at room temperature. After washing, plates were developed with colorimetric detection substrate 3,3',5,5'-tetramethylbenzidine (Turbo-TMB; Pierce, USA). The reaction was stopped after 3.5 min with 2M H2SO4, and OD was measured at 450 nM. Anti-CD33 lgG1 antibody was produced for use as a control in the experiments. Anti-CD33 antibody clone huM195 is described e.g. in US 2003/0229208 A1 :
Figure imgf000132_0001
ELISAs were carried out as described in Example 3.2, to evaluate binding to human CD47.
The following antigen-binding molecules were analysed in the experiment:
• 1 1A1 H3-lgG1 ([1 1] of Example 7).
• 1 1A1 H4-lgG1 ([12] of Example 7).
• 1 1A1 H5-lgG1 ([13] of Example 7).
• 1 1A1 H6-lgG1 ([14] of Example 7).
• 1 1A1 H7-lgG1 ([15] of Example 7).
• 1 1A1 H9-lgG1 ([17] of Example 7).
• 1 1A1 H10-lgG1 ([18] of Example 7).
• 1 1 A1 H 1 1 -IgG 1 ([19] of Example 7).
• anti-CD47 clone 1-1-A1_BM lgG1 ([1 ] of Example 2.2).
• anti-CD33 lgG1 ([20] of Example 8.1 ) (negative control) - referred to as‘M195’ in Figure 14.
The results are shown in Figure 14. The humanised antibodies displayed binding to human CD47. EC50 values were calculated, and the fold increase in EC50 value relative to EC50 for 1-1-A1_BM are shown below.
Figure imgf000132_0002
Figure imgf000133_0001
In a separate ELISA, the antigen-binding molecules were evaluated for binding to human VISTA. Antihuman VISTA antibody VSTB1 12 (described e.g. in WO 2015/097536) was included as a positive control.
The results are shown in Figure 15. The humanised antibodies were found not to cross-react with human VISTA.
8.2 Global affinity study using BLITz system
The affinity of binding of humanised versions of anti-CD47 clone 1-1 -A1 to human CD47 was in BLI experiments performed using a single channel BLItz system (ForteBio, Menlo Park, CA) using Antihuman immunoglobulin G (IgG) Fc (AHC) coated biosensor tips (Pall ForteBio, Menlo Park, CA) for capturing human IgGs. Biosensors were first hydrated for at least 10 m in assay buffer (phosphate buffered saline) followed by buffer baseline for 60 s and loading of the human IgGs onto the biosensor tips at 25 nM for 120 s. The tips were then washed briefly for 60 s with the assay buffer to remove nonspecifically bound proteins or unbound IgGs for obtaining a second buffer baseline. The association phase of the IgGs with antigens (250 nM to 62.5 nM) was set up at 120 s which was followed by a dissociation phase (assay buffer alone) for 120 s. All the BLITz runs were measured at room temperature at a stirring speed of 1000 rpm and AHC biosensors were regenerated using 10 mM of glycine (pH 2.7) after the assay. Binding affinity between the immobilized antibodies on the AHC sensors and human CD47 were determined by analyzing the binding kinetic curves using the software BLItz Pro. All the sensorgrams were reference subtracted and globally fitted into a 1 :1 model which analysed the binding curves at different concentrations of antigens and generated kinetic constants (KD/Ka/Kd) for the globally fitted data. All the binding curves were subjected to step correction which corrects the misalignment between association and dissociation steps and only the curves which fits into a R2 value greater than 0.9 were used for analysis.
Representative sensorgrams are shown in Figures 16A to 16H, and the calculated kinetic and thermodynamic constants are shown below.
Figure imgf000133_0002
Example 9: Functional characterisation of humanised versions of anti-CD47 clone 1
1-A1
9.1 Analysis of ability to block CD47-SIRPa interaction
The ability of humanised versions of anti-CD47 antibody clone 1-1 -A1 to inhibit interaction between human CD47 and SIRPa was investigated by ELISA, as described in Example 4.1.
The following antigen-binding molecules were analysed in the experiment:
• 1 1A1 H4-lgG1 ([12] of Example 7).
• 1 1A1 H5-lgG1 ([13] of Example 7).
• 1 1A1 H6-lgG1 ([14] of Example 7).
• 1 1A1 H7-lgG1 ([15] of Example 7).
• 1 1A1 H9-lgG1 ([17] of Example 7).
• 1 1A1 H10-lgG1 ([18] of Example 7).
• 1 1 A1 H 1 1 -IgG 1 ([19] of Example 7).
• anti-CD47 clone 1-1-A1_BM lgG1 ([1 ] of Example 2.2).
• anti-CD33 lgG1 ([20] of Example 8.1 ) (negative control) - referred to as‘M195’ in Figure 17.
• anti-BCMA lgG1 ([5] of Example 2.2) (negative control) - referred to as‘J6M0’ in Figure 17.
• Isotype control hlgG (negative control).
The results are shown in Figure 17. IC50 values were calculated, and the fold increase in IC50 value for the inhibition of interaction between CD47 and SIRPa relative to IC50 for 1-1-A1 BM are shown below.
Figure imgf000134_0001
9.2 In vitro hemapplutination assay
The hemagglutinating capacity of the humanised versions of anti-CD47 antibody clone 1-1-A1 was investigated using an in vitro hemagglutination assay, as described in Example 4.4.
The following antigen-binding molecules were analysed in the experiment:
• 1 1 A1 H 1 -IgG 1 ([13] of Example 7).
• 1 1A1 H2-lgG1 ([14] of Example 7).
• 1 1A1 H3-lgG1 ([15] of Example 7). • 11A1 H4-lgG1 ([16] of Example 7).
• 11A1 H5-lgG1 ([17] of Example 7).
• 11A1 H6-lgG1 ([18] of Example 7).
• 11A1 H7-lgG1 ([19] of Example 7).
• 11A1 H9-lgG1 ([21] of Example 7).
• 11A1 H10-lgG1 ([22] of Example 7).
• 11 A1 H 11 -IgG 1 ([23] of Example 7).
• anti-CD47 clone 1-1-A1_BM lgG1 ([1] of Example 2.2).
• anti-CD33 lgG1 ([20] of Example 8.1 ) (negative control) - referred to as‘Irrelevant Ag’ in Figure 18.
• anti-BCMA lgG1 ([5] of Example 2.2) (negative control) - referred to as‘J6M0’ in Figure 18.
• An anti-red blood cells antibody (AbCam, cat. no. ab34858) - referred to as‘ANTI RBC’ in Figure 18.
The results are shown in Figure 18.
Example 10: Analysis of expression of CD47, BCMA and TACI by multiple myeloma and
Burkitt’s lymphoma cells
Expression of CD47, BCMA and TACI by Multiple myeloma and Burkitt’s lymphoma cell lines was determined from cancer cell line encyclopaedia (CCLE) gene expression data. CCLE gene expression data is log2-transformed robust multi-array (RMA)-nomalised data generated from Affymetrix gene chips. Expression values are relative.
MM/Burkitt’s lymphomas cell lines:
Figure imgf000135_0001
Non-MM cell lines:
Figure imgf000135_0002
Multiple myeloma and Burkitt’s lymphoma cell lines were analysed for surface expression of CD47, BCMA and TACI by flow cytometry. Briefly, 0.5 x 10® cells were fixed by treatment with 4% paraformaldehyde for 10 min at room temperature, and subsequently stained with:
• APC-conjugated anti-CD47 antibody B6H12 at a 1 : 1 1 dilution, for 30 min at 4°C;
• 50 pg/mL J6M0 for 60 min at 4°C (primary), followed by incubation with 10 gg/mL Alex fluor 488-conjugated anti-human antibody for 60 min at RT (secondary);
• APC-conjugated anti-BCMA antibody REA315 at a 1 : 1 1 dilution, for 30 min at 4°C;
• 10 pg/mL rabbit anti-TACI (1 1937-R006; Sino Biological) for 60 min at 4°C (primary), followed by incubation with 10 pg/mL Alex fluor 488-conjugated anti-rabbit antibody for 60 min at RT (secondary).
The results of the analysis are shown in Figures 19A to 19D, and in the table below:
Figure imgf000136_0001
Example 11 : Analysis of binding of anti-BCMA and anti-TACI antibodies to recombinant BCMA and TACI proteins by ELISA
Anti-BCMA antibody J6M0 ([5] of Example 2.2) and rabbit anti-TACI (1 1937-R006; Sino Biological) were evaluated by ELISA for their ability to bind to human BCMA, cynomolgus monkey BCMA and human TACI.
ELISAs were carried out according to standard protocols. Briefly, 96-well plates (Nunc, Denmark) were coated with 1 pg/ml of Fc-tagged target protein (i.e. human BCMA, cyno BCMA, human TACI or an irrelevant target protein) in phosphate-buffered saline (PBS) for 16 h at 4°C. After blocking for 1 h with 1 % BSA in Tris buffer saline (TBS) at room temperature, the candidate antigen-binding molecule was serially diluted with the highest cone being 2.5 pg/ml and added to the plate. Post 1 h incubation at RT, plates were washed three times with TBS containing 0.05% Tween 20 (TBS-T) and were then incubated with a HRP-conjugated anti-His antibody (Life Technologies, Inc., USA) for 1 h at room temperature. After washing, plates were developed with colorimetric detection substrate 3,3',5,5'-tetramethylbenzidine (Turbo-TMB; Pierce, USA). The reaction was stopped with 2M H2SO4, and OD was measured at 450 nM.
The results are shown in Figures 20A to 20D. EC50 (pg/nnL) values were calculated, and are shown below:
• EC50 (pg/nnL) for binding of J6M0 to human BCMA = 0.035
• EC50 (pg/nnL) for binding of J6M0 to cyno BCMA = 0.041 • EC50 (pg/nnL) for binding of rabbit anti-TACI (11937-R006) to human TACI = 0.014
Example 12: Design and production of CD47 and BCMA/TACI-bindinq molecules
Polypeptides derived from APRIL were investigated as antigen-binding moieties for BCMA and/or TACI.
Antigen-binding molecules were designed comprising a BCMA/TACI-binding arm employing APRIL, or variants thereof. Variant sequences of APRIL were designed to provide for high affinity binding to BCMA/TACI, without triggering their oligomerisation and consequent activation.
Four different BCMA/TACI-binding moieties were designed:
• AAA (SEQ ID NO:234) - three copies of the BCMA/TACI-binding sequence of APRIL shown in SEQ ID NO:231 , joined by GS linkers.
• A’AA (SEQ ID NO:235) - a variant of the BCMA/TACI-binding sequence of APRIL, shown in SEQ ID NO:232 (comprising substitution D>A at position 20 of SEQ ID NO:231 , insertion of“GGS” between positions 62 and 63 of SEQ ID NO:231 , substitution M>A at position 90 of SEQ ID NO:231 , and substitution R>A at position 121 of SEQ ID NO:231 ), followed by two copies of the BCMA/TACI-binding sequence of APRIL shown in SEQ ID NO:231 , joined by GS linkers.
• A’A’A (SEQ ID NO:236) - two copies of a variant of the BCMA/TACI-binding sequence of APRIL shown in SEQ ID NO:232, followed by the BCMA/TACI-binding sequence of APRIL shown in SEQ ID NO:231 , joined by GS linkers.
• A” - a variant of the BCMA/TACI-binding sequence of APRIL, shown in SEQ ID NO:232
(comprising substitution R>A at position 34 of SEQ ID NO:231 , substitution Y>A at position 56 of SEQ ID NO:231 , substitution S>A at position 103 of SEQ ID NO:231 , substitution H>A at position 108 of SEQ ID NO:231 , and substitution F>A at position 134 of SEQ ID NO:231 ).
Nucleic acid sequence encoding the different BCMA/TACI-binding moieties were combined with sequences encoding IgG 1 hinge, CH2 and CH3 sequences for the production of antigen-binding molecules having different formats.
The following antigen-binding molecules were prepared:
Figure imgf000137_0001
Figure imgf000138_0001
Figure imgf000139_0001
Figure imgf000140_0001
The antigen binding molecules were produced by transient expression in HEK293 cells, and purified using protein G. Expression and correct assembly of antigen-binding molecules [21], [22], [23], [24], [29], [30], [31] and [32] was confirmed by analysis of the protein G-purified protein products by SDS-PAGE (2-3 pg loaded per lane) under reducing and non-reducing conditions, and also by analysis of 150 pg the purified protein products by size exclusion chromatography (SEC). Antigen-binding molecules comprising the C220S substitution (i.e. [29] to [31]) were found to have reduced propensity to aggregate as compared to the equivalent unsubstituted molecules (i.e. comprising C at position 220; i.e. [21] to [24]).
Example 13: Functional characterisation of CD47 and BCMA/TACI-bindinq molecules
13.1 Analysis of ability to bind to CD47, BCMA and TACI
ELISAs were carried out according to standard protocols. Briefly, 96-well plates (Nunc, Denmark) were coated with 1 pg/ml of Fc-tagged target protein (i.e. human BCMA, human TACI, human CD47 or an irrelevant target protein (VISTA)) in phosphate-buffered saline (PBS) for 16 h at 4°C. After blocking for 1 h with 1 % BSA in Tris buffer saline (TBS) at room temperature, the candidate antigen-binding molecule was serially diluted with the highest cone being 10 pg/ml and added to the plate. Post 1 h incubation at RT, plates were washed three times with TBS containing 0.05% Tween 20 (TBS-T) and were then incubated with a HRP-conjugated anti-His antibody (Life Technologies, Inc., USA) for 1 h at room temperature. After washing, plates were developed with colorimetric detection substrate 3, 3', 5,5'- tetramethylbenzidine (Turbo-TMB; Pierce, USA). The reaction was stopped with 2M H2SO4, and OD was measured at 450 nM.
The following antigen-binding molecules were analysed:
• 1-1-A1_BM_hole ([37] of Example 12)
• A”, anti-CD47 clone 1-1-A1_BM-lgG1 (KiHs-s) ([21] of Example 12)
• AAA, anti-CD47 clone 1-1-A1_BM-lgG1 (KiHs-s) ([22] of Example 12)
• A’AA, anti-CD47 clone 1-1-A1_BM-lgG1 (KiHs-s) ([23] of Example 12)
• A’A’A, anti-CD47 clone 1-1-A1_BM-lgG1 (KiHs-s) ([24] of Example 12)
• anti-CD47 clone 1-1-A1_BM lgG1 ([1 ] of Example 2.2)
• Rabbit anti-TACI (1 1937-R006; Sino Biological)
• Human IgG isotype (control)
• Rabbit isotype (control)
• anti-BCMA lgG1 ([5] of Example 2.2)
• Antibody specific for the irrelevant target protein
The results are shown in Figures 21 A to 21 D.
EC50 values for binding to target proteins were calculated, and are shown below:
Figure imgf000141_0001
Figure imgf000142_0001
The inventors next investigated the ability of the different antigen-binding molecules to simultaneously bind to CD47 and BCMA, or CD47 and TACI, was determined by ELISA.
For CD47/BCMA bispecific ELISAs, 96-well plates (Nunc, Denmark) were coated with 6 pg/ml of untagged human CD47 protein in PBS, for 16 hrs at 4°C. Plates were blocked for 1 h at room
temperature with 1 % BSA in Tris buffer saline containing 0.05% Tween 20 (TBS-T). His-tagged human BCMA (6 pg/ml) was added to the wells, along with 10 pg/ml of the test antigen-binding molecule, and the plates were incubated at room temperature for 1 h. Plates were then washed three times with TBS-T, and were then incubated with a HRP-conjugated anti-His antibody (Life Technologies, Inc., USA) at a 1 :5000 dilution, for 1 h at room temperature. After washing, plates were developed with colorimetric detection substrate 3,3',5,5'-tetramethylbenzidine (Turbo-TMB; Pierce, USA). The reaction was stopped after 3 min with 2M H2SO4, and OD was measured at 450 nM.
For CD47/TACI bispecific ELISAs, 96-well plates (Nunc, Denmark) were coated with 6 pg/ml of untagged human CD47 protein in PBS, for 16 hrs at 4°C. Plates were blocked for 1 h at room temperature with 5 % skimmed milk in TBS-T. His-tagged human TACI (5 pg/ml) was added to the wells, along with 10 pg/ml of the test antigen-binding molecule, and the plates were incubated at room temperature for 1 h. Plates were then washed three times with TBS-T, and were then incubated with a HRP-conjugated anti-His antibody (Life Technologies, Inc., USA) at a 1 :5000 dilution, for 1 h at room temperature. After washing, plates were developed with colorimetric detection substrate 3,3',5,5'-tetramethylbenzidine (Turbo-TMB; Pierce, USA). The reaction was stopped after 20 min with 2M H2SO4, and OD was measured at 450 nM.
The following antigen-binding molecules were analysed:
• 1-1-A1_BM_hole ([37] of Example 12)
• AAA, anti-CD47 clone 1-1-A1_BM-lgG1(KiHs-s) ([22] of Example 12)
• A’AA, anti-CD47 clone 1-1-A1_BM-lgG1(KiHs-s) ([23] of Example 12)
• A’A’A, anti-CD47 clone 1-1-A1_BM-lgG1(KiHs-s) ([24] of Example 12)
• A”, anti-CD47 clone 1-1-A1_BM-lgG1(KiHs-s) ([21] of Example 12) • 1-1-A1_BM IgG 1 ([1 ] of Example 2.2)
• anti-BCMA lgG1 ([5] of Example 2.2)
• Bispecific anti-BCMA, anti-CD47 clone 1-1-A1_BM (Cross)-lgGI (KiHs-s) ([6] of Example 2.2)
• No antibody (control) - referred to as‘Blocking’ in Figure 22.

Claims

Claims:
1. An antigen-binding molecule, optionally isolated, which is capable of binding to CD47 and BCMA and/or TACI.
2. The antigen-binding molecule according to claim 1 , wherein the antigen-binding molecule comprises (i) an antigen-binding domain capable of binding to CD47, and (ii) an antigen-binding domain capable of binding to BCMA and/or TACI.
3. The antigen-binding molecule according to claim 1 or claim 2, wherein the antigen-binding molecule comprises an antigen-binding domain which is capable of binding to CD47 in extracellular region 1.
4. The antigen-binding molecule according to any one of claims 1 to 3, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 in the V-type Ig-like domain of CD47.
5. The antigen-binding molecule according to any one of claims 1 to 4, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which is capable of binding to a polypeptide comprising or consisting of the amino acid sequence shown in SEQ ID NO:9.
6. The antigen-binding molecule according to any one of claims 1 to 5, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which is capable of inhibiting interaction between CD47 and SIRPa.
7. The antigen-binding molecule according to any one of claims 1 to 6, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which is capable of increasing phagocytosis of CD47-expressing cells.
8. The antigen-binding molecule according to any one of claims 1 to 7, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which is capable of binding to a peptide or polypeptide comprising or consisting of the amino acid sequence of SEQ ID NO:21.
9. The antigen-binding molecule according to any one of claims 1 to 8, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:220
HC-CDR2 having the amino acid sequence of SEQ ID NO:221
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:222 LC-CDR2 having the amino acid sequence of SEQ ID NO:223
LC-CDR3 having the amino acid sequence of SEQ ID NO:224;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
10. The antigen-binding molecule according to any one of claims 1 to 9, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises:
(a)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24
HC-CDR2 having the amino acid sequence of SEQ ID NO:25
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(b)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC-CDR2 or LC-CDR3 are substituted with another amino acid;
or
(c)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24
HC-CDR2 having the amino acid sequence of SEQ ID NO:25
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and (ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 190
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(d)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:190
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(e)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24
HC-CDR2 having the amino acid sequence of SEQ ID NO:25
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 191
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(f)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and (ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 191
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(g)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid;
or
(h)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO:193;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC-CDR2 or LC-CDR3 are substituted with another amino acid.
1 1. The antigen-binding molecule according to any one of claims 1 to 10, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises:
(a)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24
HC-CDR2 having the amino acid sequence of SEQ ID NO:25
HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and (ii) a light chain variable (VL) region incorporating the following CDRs: LC-CDR1 having the amino acid sequence of SEQ ID NO:32 LC-CDR2 having the amino acid sequence of SEQ ID NO:33 LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or
(b)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188 HC-CDR2 having the amino acid sequence of SEQ ID NO: 189 HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32 LC-CDR2 having the amino acid sequence of SEQ ID NO:33 LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or
(c)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24 HC-CDR2 having the amino acid sequence of SEQ ID NO:25 HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 190 LC-CDR2 having the amino acid sequence of SEQ ID NO:192 LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or
(d)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188 HC-CDR2 having the amino acid sequence of SEQ ID NO: 189 HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 190 LC-CDR2 having the amino acid sequence of SEQ ID NO: 192 LC-CDR3 having the amino acid sequence of SEQ ID NO:34; or
(e)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:24 HC-CDR2 having the amino acid sequence of SEQ ID NO:25 HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:191 LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or
(f)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 191
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or
(g)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO: 192
LC-CDR3 having the amino acid sequence of SEQ ID NO:34;
or
(h)
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 188
HC-CDR2 having the amino acid sequence of SEQ ID NO: 189
HC-CDR3 having the amino acid sequence of SEQ ID NO:26; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:32
LC-CDR2 having the amino acid sequence of SEQ ID NO:33
LC-CDR3 having the amino acid sequence of SEQ ID NO: 193.
12. The antigen-binding molecule according to any one of claims 1 to 1 1 , wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises:
a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:23, 39, 229, 178, 180, 181 , 182 or 183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:31 , 44, 230, 179, 184, 185, 186 or 187.
13. The antigen-binding molecule according to any one of claims 1 to 12, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises: (i) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:23; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:31 ;
or.
(ii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:39; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:44;
or.
(iii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:229; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:230;
or.
(iv) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:178; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 179;
or.
(v) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 180; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:179;
or.
(vi) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:181 ; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 179;
or.
(vii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 182; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 179;
or.
(viii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:179;
or.
(ix) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 182; and a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 184;
or.
(x) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 184;
or.
(xi) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 182; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 185;
or.
(xii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 185;
or.
(xiii) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 186;
or.
(xiv) a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:183; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 187.
14. The antigen-binding molecule according to any one of claims 1 to 7, wherein the antigen-binding molecule is capable of binding to a peptide or polypeptide comprising or consisting of the amino acid sequence of SEQ ID NO:22.
15. The antigen-binding molecule according to any one of claims 1 to 7 or 14, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:50
HC-CDR2 having the amino acid sequence of SEQ ID NO:51
HC-CDR3 having the amino acid sequence of SEQ ID NO:52,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:58 LC-CDR2 having the amino acid sequence of SEQ ID NO:59
LC-CDR3 having the amino acid sequence of SEQ ID NO:60;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
16. The antigen-binding molecule according to any one of claims 1 to 7, 14 or 15, wherein the antigenbinding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:50
HC-CDR2 having the amino acid sequence of SEQ ID NO:51
HC-CDR3 having the amino acid sequence of SEQ ID NO:52; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:58
LC-CDR2 having the amino acid sequence of SEQ ID NO:59
LC-CDR3 having the amino acid sequence of SEQ ID NO:60.
17. The antigen-binding molecule according to any one of claims 1 to 7 or 14 to 16, wherein the antigenbinding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises: a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:49; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:57.
18. The antigen-binding molecule according to any one of claims 1 to 7 or 14, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:66
HC-CDR2 having the amino acid sequence of SEQ ID NO:67
HC-CDR3 having the amino acid sequence of SEQ ID NO:68,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:74
LC-CDR2 having the amino acid sequence of SEQ ID NO:75
LC-CDR3 having the amino acid sequence of SEQ ID NO:76;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
19. The antigen-binding molecule according to any one of claims 1 to 7, 14 or 18, wherein the antigenbinding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO:66 HC-CDR2 having the amino acid sequence of SEQ ID NO:67
HC-CDR3 having the amino acid sequence of SEQ ID NO:68; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:74
LC-CDR2 having the amino acid sequence of SEQ ID NO:75
LC-CDR3 having the amino acid sequence of SEQ ID NO:76.
20. The antigen-binding molecule according to any one of claims 1 to 7, 14, 18 or 19, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to CD47 which comprises:
a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:65; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:73.
21. The antigen-binding molecule of any one of claims 1 to 20, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA which is capable of binding to the extracellular domain of BCMA.
22. The antigen-binding molecule of any one of claims 1 to 21 , wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to TACI which is capable of binding to the extracellular domain of TACI.
23. The antigen-binding molecule of any one of claims 1 to 22, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA which comprises:
(i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 103
HC-CDR2 having the amino acid sequence of SEQ ID NO: 104
HC-CDR3 having the amino acid sequence of SEQ ID NO: 105,
or a variant thereof in which one or two or three amino acids in one or more of HC-CDR1 , HC- CDR2, or HC-CDR3 are substituted with another amino acid; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO: 1 1 1
LC-CDR2 having the amino acid sequence of SEQ ID NO: 1 12
LC-CDR3 having the amino acid sequence of SEQ ID NO: 1 13;
or a variant thereof in which one or two or three amino acids in one or more of LC-CDR1 , LC- CDR2 or LC-CDR3 are substituted with another amino acid.
24. The antigen-binding molecule according to any one of claims 1 to 23, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA which comprises: (i) a heavy chain variable (VH) region incorporating the following CDRs:
HC-CDR1 having the amino acid sequence of SEQ ID NO: 103
HC-CDR2 having the amino acid sequence of SEQ ID NO: 104
HC-CDR3 having the amino acid sequence of SEQ ID NO: 105; and
(ii) a light chain variable (VL) region incorporating the following CDRs:
LC-CDR1 having the amino acid sequence of SEQ ID NO:111
LC-CDR2 having the amino acid sequence of SEQ ID NO:112
LC-CDR3 having the amino acid sequence of SEQ ID NO:113.
25. The antigen-binding molecule according to any one of claims 1 to 24, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA which comprises:
a VH region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO: 102; and
a VL region comprising an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:110.
26. The antigen-binding molecule according to any one of claims 1 to 25, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI which comprises or consists of a polypeptide comprising a BCMA- or TACI-binding amino acid sequence.
27. The antigen-binding molecule according to claim 26, wherein the BCMA- or TACI-binding amino acid sequence is derived from a ligand for BCMA and/or TACI.
28. The antigen-binding molecule according to claim 26 or claim 27, wherein the BCMA- or TACI-binding amino acid sequence comprises or consists of a BCMA- or TACI-binding amino acid sequence derived from APRIL.
29. The antigen-binding molecule according to any one of claims 1 to 28, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI which comprises or consists of:
(i) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:231 ; or
(ii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:232; or
(iii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:233.
30. The antigen-binding molecule according to any one of claims 1 to 29, wherein the antigen-binding molecule comprises an antigen-binding domain capable of binding to BCMA and/or TACI which comprises or consists of:
(i) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:234; or (ii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:235; or
(iii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:236.
31. The antigen-binding molecule according to any one of claims 1 to 30, wherein the antigen-binding molecule is capable of binding to cells expressing CD47, BCMA and/or TACI at the cell surface.
32. The antigen-binding molecule according to any one of claims 1 to 31 , wherein the antigen-binding molecule is capable of inhibiting interaction between CD47 and SIRPa.
33. The antigen-binding molecule according to any one of claims 1 to 32, wherein the antigen-binding molecule is capable of increasing phagocytosis of CD47-expressing cells.
34. The antigen-binding molecule according to any one of claims 1 to 33, wherein the antigen-binding molecule does not induce substantial hemagglutination.
35. An antigen-binding molecule, optionally isolated, which is capable of binding to BCMA and/or TACI, which comprises, or consists of, a polypeptide comprising a BCMA- or TACI-binding amino acid sequence.
36. The antigen-binding molecule according to claim 35, wherein the BCMA- or TACI-binding amino acid sequence comprises or consists of a BCMA- or TACI-binding amino acid sequence derived from APRIL.
37. The antigen-binding molecule according to claim 35 or claim 36, wherein the antigen-binding molecule comprises a polypeptide capable of binding to BCMA and/or TACI which comprises or consists of:
(i) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:231 ; or
(ii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:232; or
(iii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:233.
38. The antigen-binding molecule according to any one of claims 35 to 37, wherein the antigen-binding molecule comprises a polypeptide capable of binding to BCMA and/or TACI which comprises or consists of:
(i) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:234; or
(ii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:235; or (iii) an amino acid sequence having at least 70% sequence identity to the amino acid sequence of SEQ ID NO:236.
39. The antigen-binding molecule according to any one of claims 35 to 38, further comprising an antigenbinding domain capable of binding to an antigen other than BCMA and TACI.
40. The antigen-binding molecule according to claim 39, wherein the antigen other than BCMA and TACI is CD47.
41. A chimeric antigen receptor (CAR) comprising an antigen-binding molecule according to any one of claims 1 to 40.
42. A nucleic acid, or a plurality of nucleic acids, optionally isolated, encoding an antigen-binding molecule according to any one of claims 1 to 40 or a CAR according to claim 41.
43. An expression vector, or a plurality of expression vectors, comprising a nucleic acid or a plurality of nucleic acids according to claim 42.
44. A cell comprising an antigen-binding molecule according to any one of claims 1 to 40, a CAR according to claim 41 , a nucleic acid or a plurality of nucleic acids according to claim 42, or an expression vector or a plurality of expression vectors according to claim 43.
45. A method comprising culturing a cell comprising a nucleic acid or a plurality of nucleic acids according to claim 42, or an expression vector or a plurality of expression vectors according to claim 43, under conditions suitable for expression of the antigen-binding molecule or CAR from the nucleic acid(s) or expression vector(s).
46. A composition comprising an antigen-binding molecule according to any one of claims 1 to 40, a CAR according to claim 41 , a nucleic acid or a plurality of nucleic acids according to claim 42, an expression vector or a plurality of expression vectors according to claim 43, or a cell according to claim 44.
47. An antigen-binding molecule according to any one of claims 1 to 40, a CAR according to claim 41 , a nucleic acid or a plurality of nucleic acids according to claim 42, an expression vector or a plurality of expression vectors according to claim 43, a cell according to claim 44, or a composition according to claim 46 for use in a method of medical treatment or prophylaxis.
48. An antigen-binding molecule according to any one of claims 1 to 40, a CAR according to claim 41 , a nucleic acid or a plurality of nucleic acids according to claim 42, an expression vector or a plurality of expression vectors according to claim 43, a cell according to claim 44, or a composition according to claim 46, for use in a method of treatment or prevention of a cancer.
49. Use of an antigen-binding molecule according to any one of claims 1 to 40, a CAR according to claim 41 , a nucleic acid or a plurality of nucleic acids according to claim 42, an expression vector or a plurality of expression vectors according to claim 43, a cell according to claim 44, or a composition according to claim 46, in the manufacture of a medicament for use in a method of treatment or prevention of a cancer.
50. A method of treating or preventing a cancer, comprising administering to a subject a therapeutically or prophylactically effective amount of an antigen-binding molecule according to any one of claims 1 to 40, a CAR according to claim 41 , a nucleic acid or a plurality of nucleic acids according to claim 42, an expression vector or a plurality of expression vectors according to claim 43, a cell according to claim 44, or a composition according to claim 46.
51. The antigen-binding molecule, nucleic acid or plurality of nucleic acids, expression vector or plurality of expression vectors, cell or composition for use according to claim 48, the use according to claim 49 or the method according to claim 50, wherein the cancer is selected from: a hematologic malignancy, a myeloid hematologic malignancy, a lymphoblastic hematologic malignancy, a B cell malignancy, multiple myeloma (MM), myelodysplastic syndrome (MDS), acute myeloid leukemia (AML), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), lymphocytic leukemia, lymphoma, B cell lymphoma, Hodgkin’s lymphoma (HL), non-Hodgkin’s lymphoma (NHL), Burkitt lymphoma, bladder cancer, brain cancer, glioblastoma, ovarian cancer, breast cancer, colon cancer, liver cancer, hepatocellular carcinoma, prostate cancer, lung cancer, Non-small Cell Lung Cancer (NSCLC), skin cancer and melanoma.
52. A method for increasing phagocytosis of CD47-expressing cells, comprising contacting CD47- expressing cells with an antigen-binding molecule according to any one of claims 1 to 34.
53. An in vitro complex, optionally isolated, comprising an antigen-binding molecule according to any one of claims 1 to 40 bound to CD47, BCMA and/or TACI.
54. A method comprising contacting a sample containing, or suspected to contain, CD47, BCMA and/or TACI with an antigen-binding molecule according to any one of claims 1 to 40, and detecting the formation of a complex of the antigen-binding molecule with CD47, BCMA and/or TACI.
55. A method of selecting or stratifying a subject for treatment with a CD47-targeted agent and/or a BCMA-targeted agent and/or a TACI-targeted agent, the method comprising contacting, in vitro, a sample from the subject with an antigen-binding molecule according to any one of claims 1 to 40 and detecting the formation of a complex of the antigen-binding molecule with CD47, BCMA and/or TACI.
56. Use of an antigen-binding molecule according to any one of claims 1 to 40 as an in vitro or in vivo diagnostic or prognostic agent.
57. Use of an antigen-binding molecule according to any one of claims 1 to 40 in a method for detecting, localizing or imaging a cancer, optionally wherein the cancer is selected from: a hematologic malignancy, a myeloid hematologic malignancy, a lymphoblastic hematologic malignancy, a B cell malignancy, multiple myeloma (MM), myelodysplastic syndrome (MDS), acute myeloid leukemia (AML), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), lymphocytic leukemia, lymphoma, B cell lymphoma, Hodgkin’s lymphoma (HL), non-Hodgkin’s lymphoma (NHL), Burkitt lymphoma, bladder cancer, brain cancer, glioblastoma, ovarian cancer, breast cancer, colon cancer, liver cancer, hepatocellular carcinoma, prostate cancer, lung cancer, Non-small Cell Lung Cancer (NSCLC), skin cancer and melanoma.
PCT/EP2018/079932 2017-12-07 2018-11-01 Cd47 and bcma/taci antigen-binding molecules WO2019110209A1 (en)

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Cited By (3)

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WO2022090556A1 (en) * 2020-11-02 2022-05-05 Hummingbird Bioscience Pte. Ltd. Bcma/taci antigen-binding molecules

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