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WO1998013026A1 - Cationic amphiphile compositions for intracellular delivery of therapeutic molecules - Google Patents

Cationic amphiphile compositions for intracellular delivery of therapeutic molecules Download PDF

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Publication number
WO1998013026A1
WO1998013026A1 PCT/US1997/009748 US9709748W WO9813026A1 WO 1998013026 A1 WO1998013026 A1 WO 1998013026A1 US 9709748 W US9709748 W US 9709748W WO 9813026 A1 WO9813026 A1 WO 9813026A1
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WO
WIPO (PCT)
Prior art keywords
amphiphiles
amphiphile
cationic
carbamate
mmol
Prior art date
Application number
PCT/US1997/009748
Other languages
French (fr)
Inventor
John Marshall
David J. Harris
Edward R. Lee
Craig S. Siegel
Simon J. Eastman
Chau Dung Chang
Ronald K. Scheule
Seng H. Cheng
Original Assignee
Genzyme Corporation
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Publication date
Application filed by Genzyme Corporation filed Critical Genzyme Corporation
Priority to JP10515603A priority Critical patent/JP2001500897A/en
Priority to AU32315/97A priority patent/AU736143B2/en
Priority to CA002268945A priority patent/CA2268945A1/en
Priority to PCT/US1997/009748 priority patent/WO1998013026A1/en
Priority to EP97927989A priority patent/EP1007003A1/en
Publication of WO1998013026A1 publication Critical patent/WO1998013026A1/en

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/87—Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
    • C12N15/88—Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation using microencapsulation, e.g. using amphiphile liposome vesicle
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K9/00—Medicinal preparations characterised by special physical form
    • A61K9/10—Dispersions; Emulsions
    • A61K9/127—Synthetic bilayered vehicles, e.g. liposomes or liposomes with cholesterol as the only non-phosphatidyl surfactant
    • A61K9/1271—Non-conventional liposomes, e.g. PEGylated liposomes or liposomes coated or grafted with polymers
    • A61K9/1272—Non-conventional liposomes, e.g. PEGylated liposomes or liposomes coated or grafted with polymers comprising non-phosphatidyl surfactants as bilayer-forming substances, e.g. cationic lipids or non-phosphatidyl liposomes coated or grafted with polymers

Definitions

  • the present invention relates to novel cationic amphiphilic compounds that facilitate the intracellular delivery of biologically active (therapeutic) molecules.
  • the present invention relates also to pharmaceutical compositions that comprise such cationic amphiphiles, and that are useful to deliver into the cells of patients therapeutically effective amounts of biologically active molecules.
  • the novel cationic amphiphilic compounds of the invention are particularly useful in relation to gene therapy.
  • biologically active molecules for which effective targeting to a patients' tissues is often not achieved: (1) numerous proteins including immunoglobin proteins, (2) polynucleotides such as genomic DNA, cDNA, or mR A (3) antisense polynucleotides; and (4) many low molecular weight compounds, whether synthetic or naturally occurring, such as the peptide hormones and antibiotics.
  • acquired disorders are: (1) for cancers — multiple myeloma, leukemias, melanomas, ovarian carcinoma and small cell lung cancer; (2) for cardiovascular conditions — progressive heart failure, rcstenosis, and hemophilias; and (3) for neurological conditions — traumatic brain injury.
  • Transfection requires successful transfection of target cells in a patient.
  • Transfection may generally be defined as the process of introducing an expressible polynucleotide (for example a gene, a cDNA, or an mRNA patterned thereon) into a cell.
  • an expressible polynucleotide for example a gene, a cDNA, or an mRNA patterned thereon
  • Successful expression of the encoding polynucleotide leads to production in the cells of a normal protein and leads to correction of the disease state associated with the abnormal gene.
  • Therapies based on providing such proteins directly to target cells are often ineffective for the reasons mentioned above.
  • Cystic fibrosis a common lethal genetic disorder, is a particular example of a disease that is a target for gene therapy.
  • the disease is caused by the presence of one or more mutations in the gene that encodes a protein known as cystic fibrosis transmembrane conductance regulator ("CFTR"), and which regulates the movement of ions (and therefore fluid) across the cell membrane of epithelial cells, including lung epithelial cells.
  • CFTR cystic fibrosis transmembrane conductance regulator
  • Abnormnal ion transport in airway cells leads to abnormal mucous secretion, inflammmation and infection, tisssue damage, and eventually death.
  • amphiphiles In as much as compounds designed to facilitate intracellular delivery of biologically active molecules must interact with both non-polar and polar environments (in or on, for example, the plasma membrane, tissue fluids, compartments within the cell, and the biologically active molecule itself ), such compounds are designed typically to contain both polar and non-polar domains. Compounds having both such domains may be termed amphiphiles, and many lipids and synthetic lipids that have been disclosed for use in facilitating such intracellular delivery (whether for in vitro or in vivo application) meet this definition. One particularly important class of such amphiphiles is the cationic amphiphiles.
  • cationic amphiphiles have polar groups that are capable of being positively charged at or around physiological pH, and this property, is understood in the art to be important in defining how the amphiphiles interact with the many types of biologically active (therapeutic) molecules including, for example, negatively charged polynucleotides such as DNA. It is also art-preferred to expose such amphiphiles to a source of protons, thereby increasing their positive charge, prior to contacting therapeutic molecules.
  • cationic amphiphilic compounds that have both polar and non-polar domains and that are stated to be useful in relation to intracellular delivery of biologically active molecules are found, for example, in the following references, which contain also useful discussion of (1) the properties of such compounds that are understood in the art as making them suitable for such applications, and (2) the nature of structures, as understood in the art, that are formed by complexing of such amphiphiles with therapeutic molecules intended for intracellular delivery.
  • cationic amphiphiles that are particularly effective to facilitate transport of biologically active molecules into cells.
  • Any cationic amphiphile useful for this purpose is contemplated herein.
  • such cationic amphiphile is used in a state in which it is capable of accepting additional protons, i.e., it is not fully protonated.
  • cationic amphiphiles may be considered to encompass four general categories: (A) T-shaped/ steroid-based molecules; (B) T-shaped/ non-steroid based molecules; (C) non T- shaped/steroid-based molecules and (D) non T-shaped/non-steroid based molecules.
  • T-shaped/ steroid-based amphiphiles these are divided into two groups herein described, in representative examples, as: (I) having polar R groups contributed by alkylamine and polyalkylamine moieties ; and (II) having polar R groups contributed by alkylamine and polyalkylamine moieties, extended by amino acids and derivatized amino acids.
  • amphiphiles of Category A, Group I capable of facilitating transport of biologically active molecules into cells, said amphiphiles having the structure (I),
  • Z is a steroid
  • X is a carbon atom or a nitrogen atom
  • Y is a short linking group , or Y is absent;
  • R- * is H, or a saturated or unsaturated aliphatic group;
  • R ⁇ is — NH— , an alkylamine, or a polyalkylamine
  • R ⁇ is H, or a saturated or unsaturated aliphatic group
  • R-*-" is --NH-- , an alkylamine, or a polyalkylamine; and wherein R* is the same or is different from R 2 , except that both R* and R 2 cannot be — NH--.
  • the steroid component "Z" is selected from the group consisting of 3-sterols, wherein said sterol molecule is linked by the 3-O- group thereof , or by N- in replacement thereof, to Y (or directly to X, if Y is absent ).
  • particularly effective amphiphiles include, for example, spermidine cholesterol carbamate ( N 4 -spermidine cholesteryl carbamate, amphiphile No. 53), and spermine cholesterol carbamate ( N -spermine cholesteryl carbamate, amphiphile No. 67), and amphiphiles patterned thereon.
  • the steroid group is linked to Y (or directly to X, if Y is absent) from ring position 17 of the steroid nucleus (see Figures 1 and 22), or from the arm that normally extends from position 17 in many steroids( see the structure of cholesterol in Figure 1), or from any shortened form of said arm.
  • linking group Y are contained no more than about three or four atoms that themselves form a bridge of covalent bonds between X and Z.
  • Y is a linking group wherein no more than one atom of said group forms a bond with both X and Z, or Y is absent.
  • amphiphiles provided according to Group I include: iST-spermidine cholesteryl carbamate
  • amphiphiles of Category A, Group II capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (II),
  • Z is a steroid
  • X is a carbon atom or a nitrogen atom
  • Y is a linking group or Y is absent
  • R is an amino acid, a derivatized amino acid, H or alkyl
  • R' is — NH- , an alkylamine, or a polyalkylamine
  • R 4 is an amino acid, a derivatized amino acid, H or alkyl
  • R 2 is --NH-- , an alkylamine, or a polyalkylamine; and wherein R- is the same or is different from R 2 , except that both R-- and
  • R 2 cannot be -NH ⁇ .
  • amphiphiles provided according to Group II include:
  • T-shaped/ non-steroid based amphiphiles these are divided generally according to the practice of the invention into two groups, herein described, in representative examples, as: (III) wherein the lipophilic group is contributed by a mono or dialkylamine moiety and the polar groups are, typically, alkylamine or polyalkylamine; and (IV) wherein the lipophilic groups are contributed by saturated or unsaturated alkyl or acyl groups and the polar groups are, typically, alkylamine or polyalkylamine.
  • amphiphiles of Category B, Group III capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (III),
  • Z is an alkylamine or a dialkylamine, linked by the N-atom thereof, to Y ( or directly to X, if Y is absent ), wherein if Z is a dialkylamine, the alkyl groups thereof can be the same or different;
  • X is a carbon atom or a nitrogen atom
  • Y is a short linking group , or Y is absent;
  • R-* is H, or a saturated or unsaturated aliphatic group
  • R' is —NH— , an alkylamine, or a polyalkylamine
  • R 4 is II, or a saturated or unsaturated aliphatic group
  • R 2 is —Nil— , an alkylamine, or a polyalkylamine; and wherein R' is the same or is different from R 2 , except that both R' and
  • R 2 cannot be -NH--.
  • linking group Y there are contained no more than about three or four atoms that themselves form a bridge of covalent bonds between X and Z.
  • amphiphiles provided according to Group III include: .
  • Additional Group III amphiphiles are represented by those related to the well known amphiphile dioctadecylamidologlycylspermine "DOGS" (see Behr et al., Proc. Natl. Acad. Sci. ,USA, 86, 6982-6986, 1989) and DPPES (as described in Behr, J.P., Bioconjugatc Chemistry, 5, 1994, 382-389.
  • DOGS amphiphile dioctadecylamidologlycylspermine
  • amphiphiles of Category B, Group IV capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (IV),
  • a and B are independently O, N or S;
  • R 5 and R 6 are independently alkyl or acyl groups and may be saturated or contain sites of unsaturation;
  • E is a carbon atom or a nitrogen atom;
  • R' is H, or a saturated or unsaturated aliphatic group
  • R' is — NH-- , an alkylamine, or a polyalkylamine
  • R 4 is H, or a saturated or unsaturated aliphatic group
  • R 2 is — NH— , an alkylamine, or a polyalkylamine; and wherein R* is the same or is different from R 2 , except that both R' and
  • R 2 cannot be -NH--.
  • up IV include:
  • the invention also provides for formulations of non T-shaped/steroid-based amphiphiles (Category C), and use thereof, such as
  • Additional Category C amphiphiles that may be used according to the practice of the invention include, for example, those described in U.S. Patent 5, 283,185 to Epand et al. including 3B [N ⁇ N 1 , ⁇ - dimethylaminoethane)- carbamoyl] cholesterol, termed "DC-chol".
  • the invention also provides for diverse formulations of non T- shaped/non steroid-based amphiphiles (Category D),and use thereof, such as cationic lipids patterned on N-[ l(2,3-dioleyloxy)propyl]-N,N,N- trimethylammonium chloride ("DOTMA"), but being non-quaternary variants thereof that can be further protonated (Feigner, et al. Proc. Natl. Acad. Sci.
  • DOTMA l(2,3-dioleyloxy)propyl]-N,N,N- trimethylammonium chloride
  • compositions that comprise one or more cationic amphiphiles, and one or more biologically active molecules, wherein said compositions facilitate intracellular delivery in the tissues of patients of therapeutically effective amounts of the biologically active molecules.
  • the pharmaceutical compositions of the invention may be formulated to contain one or more additional physiologically acceptable substances that stabilize the compositions for storage and/or contribute to the successful intracellular delivery of the biologically active molecules.
  • the invention provides a method for facilitating the transfer of biologically active molecules into cells comprising the steps of: preparing a dispersion of a cationic amphiphile of the invention; contacting said dispersion with a biologically active molecule to form a complex between said amphiphile and said molecule, and contacting cells with said complex thereby facilitating transfer of said biologically-active molecule into the cells.
  • the cationic amphiphile(s) of the invention may be formulated with one or more additional cationic amphiphiles including those known in the art, or with neutral co-Iipids such as dioleoylphosphatidyl- ethanolamine, (" DOPE"), to facilitate delivery to cells of the biologically active molecules.
  • compositions that comprise one or more cationic amphiphiles of the invention can be used to introduce biologically active molecules into plant cells, such as plant cells in tissue culture.
  • the present application provides for novel plasmids suitable for complexing with the amphiphiles of the invention in order to treat patients by gene therapy, so that a high level of expression of the appropriate therapeutic transgene can be achieved.
  • Representative examples thereof include the plasmid pCMVHI and pCFI.
  • pCFl plasmid contains the enhancer/promoter region from the immediate early gene of cytomegalovirus.
  • the pla id also contains a hybrid intron located between the promoter and the transgene cDNA.
  • the polyadenylation signal of the bovine growth hormone gene was selected for placement downstream from the transgene.
  • plasmid performance is made possible by the provision of replicating episomal plasmids.
  • Additional therapeutic enhancements are made possible by providing plasmids in which expression of the therapeutic transgene is placed under the control of a transcriptional promoter that is sensitive to the concentration of inflammation-related substances in the target tissue.
  • Such plasmids are of particular use for the treatment of clinical cases in which inflammation is a major complication.
  • particular organs or tissues may be targeted for gene therapy, by intravenous administration of amphiphile/transgene complexes, by adjusting the ratio of amphiphile to DNA in such complexes, and by adjusting the apparent charge or zeta potential thereof.
  • FIGURE 1 depicts representative Group I cationic amphophiles.
  • FIGURE 2 depicts representative steroid lipophilic groups.
  • FIGURE 3 depicts representative steroid lipophilic groups.
  • FIGURE 4 depicts a transacylation reaction.
  • FIGURE 5 depicts represenative Group II cationic amphiphiles.
  • FIGURE 6 depicts represenative Group III cationic amphiphiles.
  • FIGURE 7 depicts representative Group IV cationic amphiphiles.
  • FIGURE 8 provides a route of synthesis for spermidine cholesterol carbamate.
  • FIGURE 9 provides a route of synthesis for spermine cholesterol carbamate
  • FIGURE 10 provides a comparison of in vivo transfection efficiency for certain cationic amphiphiles under particular conditions.
  • ITGURE 11 is a depiction of in vivo transfection effeciency as a function of
  • DNA concentration for a particular cationic amphiphile DNA concentration for a particular cationic amphiphile.
  • FIGURE 12 is a depiction of in vivo transfection effeciency as a function of concentration of a particular cationic amphiphile.
  • ITGURE 13 provides relative transfection efficiencies for Group I amphiphiles.
  • FIGURE 14 provides relative transfection efficiencies for Group II amphiphiles.
  • FIGURE 15 provides relative transfection efficiencies for Group IV amphiphiles.
  • FIGURE 16 provides a map of pCMVHI-CAT plasmid.
  • FIGURE 17 shows the hybrid intron of pCMVHI-CAT.
  • FIGURE 18 (panel A) provides a map of pCFl/CAT plasmid.
  • FIGURE 18 (panel B) provides a map of pCF2/CAT plasmid.
  • FIGURE 19 shows a plot of corrected chloride ion transport in nasal polyp epithelial cells from a cystic fibrosis patient.
  • FIGURE 20 provides a map of pMyc4-CFTR plasmid.
  • a FIGURE 21 demonstrates intravenous targeting of the heart and lung.
  • FIGURE 22 demonstrates the improved in vivo performance of amphiphile No. 37 when provided in less than fully protonated form.
  • This invention provides for cationic amphiphile compounds, and compositions containing them, that are useful to facilitate transport of biologically active molecules into cells.
  • the amphiphiles are particularly useful in facilitating the transport of biologically active polynucleotides into cells, and in particular to the cells of patients for the purpose of gene therapy.
  • cationic means that the R groups, as defined herein, tend to have one or more positive charges in a solution that is at or near physiological pH.
  • cationic amphiphiles that are capable of accepting additional protons are described.
  • Such cationic amphiphiles have one or more positive charges at pH 7, but have not been fully protonated ,as manipulated herein, and therefore have obtained less than their full cationic potential.
  • Such cationic character may enhance interaction of the amphiphile with therapeutic molecules (such as nucleic acids which have a negative charge) or with cell structures (such as plasma membrane glycoproteins) thereby contributing to successful entry of the therapeutic molecules into cells, or processing within subcompartments (such as the nucleus) thereof.
  • therapeutic molecules such as nucleic acids which have a negative charge
  • cell structures such as plasma membrane glycoproteins
  • a positively charged molecule such as a cationic amphiphile capable of accepting additional protons, may have the necessary positive charges to be able to transverse a cell membrane and also, given the lack of full protonation, may be able to disassociate from a biologically active molecule such as
  • Bio molecules for which transport into cells can be facilitated according to the practice of the invention include, for example, genomic DNA, cDNA, mRNA, antisense RNA or DNA, polypeptides and small molecular weight drugs or hormones. Representative examples thereof are mentioned below in connection with the description of therapeutic (pharmaceutical) compositions of the invention.
  • Cationic amphiphiles in Category A possess several novel features. These features may be seen in comparison with, for example, cationic amphiphile structures such as those disclosed in U.S. Patent No. 5, 283,185 to Epand et al., a representative structure of which is is 3B [N-(N ,N - dimethylaminoethane)-carbamoyl] cholesterol, commonly known as "DC- chol", and to those disclosed by Behr et al. Proc. Natl. Acad. Sci., USA, 86, 6982- 6986 (1 89), a representative structure of which is dioctadecylamidolo- glycylspermine ("DOGS").
  • DOGS dioctadecylamidolo- glycylspermine
  • Cationic amphiphiles in Category A of the present invention contain distinctive structural features: (1) the presence of a lipophilic group which is connected directly, or through a linking group, to two cationic groups (see below) that themselves comprise amino, alkylamine or polyalkylamine groups, there resulting an overall and novel "T-shaped" structure; and (2) in many cases, and in comparison with numerous art-recognized amphiphiles, the use of a relatively short linking group to bring into close proximity the lipophilic and cationic regions of the amphiphile. Without being limited as to theory, it is believed that these features contribute substantially to the transfection- enhancing capability of these compounds.
  • Figure 10 ⁇ demonstrates the very substantial in vivo transfection-enhancing capability of spermidine cholesterol carbamate (a novel amphiphile of the invention) in comparision to DC- chol and DMRIE — two well recognized transfectants.
  • the biologically active molecule is an encoding polynucleotide that is expressed when placed in the cells of a patient leading to the correction of a metabolic defect.
  • the polynucleotide encodes for a polypeptide having an amino acid sequence sufficiently duplicalive of that of human cystic fibrosis transmembrane regulator ("CFTR") to allow possession of the biological property of epithelial cell anion channel regulation.
  • CFTR cystic fibrosis transmembrane regulator
  • characteristic and novel features of the amphiphiles of the invention include first, that the linking group that connects the two cationic amine groups to the lipophilic group is very short, or absent entirely, and second, that the resultant linking of the the two cationic R groups to the lipophilic group forms a T-shaped structure when viewed from the position of atom "X" (a carbon or nitrogen atom) as depicted, for example, in Structures (I), (II), (III) and (IV, see atom "E").
  • atom "X" a carbon or nitrogen atom
  • both spermidine cholesterol carbamate ( N 4 -spermidine cholesteryl carbamate) and spermine cholesterol carbamate ( N 4 -spermine cholesteryl carbamate) have been determined to be superior transfectants in vivo in comparison with non "T-shaped" amphiphiles having otherwise equivalent amounts of cationic alkylamine structure. Superior performance (see also Example 3) has thus been determined for:
  • T-shaped/steroid- based cationic amphiphiles of the invention have structural features in common with naturally occurring polyamines such as spermine and spermidine (including N-atom spacing).
  • the structures of Category "A" (T- shaped/steroid based) amphiphiles 53, 67, 78, 90, and 91 are representative.
  • the placement of the nitrogen atoms in the polar head groups of the amphiphiles such that they are separated by one or more combinations of 3 and 4 carbon atoms leads to high in vivo transfection efficiency for plasmid transgenes complexed therewith.
  • amphiphiles of Group I capable of facilitating transport of biologically active molecules into cells, said amphiphiles having the structure (I),
  • Z is a steroid
  • X is a carbon atom or a nitrogen atom
  • Y is a short linking group , or Y is absent;
  • R is H, or a saturated or unsaturated aliphatic group
  • R is — NH— , an alkylamine, or a polyalkylamine
  • R 4 is H, or a saturated or unsaturated aliphatic group
  • R 2 is — NH— , an alkylamine, or a polyalkylamine; and wherein R- is the same or is different from R 2 , except that both R' and
  • R- cannot be — NH— .
  • Additional linking groups useful in the practice of the invention are those patterned on small amino acids such as glycinyl, alanyl, beta-alanyl, serinyl, and the like.
  • Y is a linking group wherein no more than one atom of this group forms a bond with both "X"and "Z".
  • linking group "Y" may be absent entirely.
  • Cationic amphiphiles may include a variety of structures as lipophilic group. Steroids represent a preferred group of such structures.
  • Steroids are widely distributed in the animal, microbial and plant kingdoms. They may be defined as solid alcohols that typically contain, as their basic skeleton, 17 carbon atoms arranged in the form of a perhydrocyclopenteno-phenanthrene ring system. Accordingly, such compounds include bile acids, cholesterol and related substances, vitamin D, certain insect molting hormones, certain sex hormones, corticoid hormones, certain antibiotics, and derivatives of all of the above wherein additional rings are added or are deleted from the basic structure, [see Natural Products Chemistry, K. Nakanashi et al.
  • steroid is used broadly to include related molecules derived from multiple isoprenoid units, such as vitamin E. Steroids
  • certain preferred amphiphiles of the invention include a steroid component "Z" that is selected from the group consisting of 3-sterols, wherein said sterol molecule is linked by the 3-O- group thereof , or by N- in replacement thereof, to Y (see Figure I).
  • Such structures include, for example, spermidine cholesterol carbamate, spermine cholesterol carbamate, spermidine 7-dehydrocholesteryl carbamate, lysine 3-N-dihydrocholesteryl carbamate, spermidine cholestamine urea, and N-3-aminopropyl-N-4- aminobutylcholestamine.
  • the steroid group is linked to Y (or directly to X if Y is absent) from ring position 17 of the steroid nucleus (see Figures 1 and 3), or from the arm that normally extends from position 17 in many steroids (see Figures 1 and 3), or from any shortened form of said arm.
  • the molecules have structures which can be metabolized by the body and are nontoxic at the doses thereof that are used.
  • steroids such as cholesterol and ergosterol that are substantially non toxic and which possess biologically normal stereospecificity in order to facilitate their safe metabolism in patients.
  • Additional steroids useful in the practice of the invention include, for example, ergosterol Bl, ergosterol B2, ergosterol B3, androsterone, cholic acid, desoxycholic acid, chenodesoxycholic acid, lithocholic acid and, for example, various derivatives thereof as are shown in the panels of Figures 2 and 3.
  • any ring position or substituent on the steroid can in general be used as point of attachment. It is preferred, however, to use a point of attachment that (1) as " mimimizes the complexity of chemical syntheses, and (2) is positioned near either "end" of the steroid molecule, for example , a position near ring position 3, or near ring position 17( or the arm that typically extends therefrom).
  • Such positions provide an orientation of the steroid with respect to the rest of the amphiphile structure that faciliates bilayer formation, and/or micelle formation, and/or stabilizes interaction with the biologically active molecules to be carried into the target cells.
  • Representative structures showing attachment of the cationic (alkyl) amine groups to the steroid lipophilic group through the arm extending from ring position 17 therof are shown in Figure 3 (panels A, B).
  • any polar groups on the steroid such as may be attached to ring position 3, be either removed or capped (for example, hydroxy as methoxy) to avoid potentially destabilizing bilayer or micelle structures.
  • Preferred steroids for use as group "Z" according to the practice of the invention include: 3- sterols (derived from cholesterol)
  • Representative species of steroid that are patterened on ergosterol and that may be used to define the structure of cationic amphiphiles of the invention include: ergosterol (double bonds as shown); ergosterol Bl ( ⁇ 8, 9; ⁇ 14, 15; ⁇ 22, 23); ergosterol Bl ( ⁇ 6, 7; ⁇ 8, 14; ⁇ 22, 23); ergosterol Bl ( ⁇ 7, 8; ⁇ 14, 15; ⁇ 22, 23); and lumisterol (the 9b-H isomer of ergosterol).
  • R 3 and R 4 are, independently, H, or saturated or unsaturated aliphatic groups.
  • the aliphatic groups can be branched or unbranched. Representative groups include alkyl, alkenyl, and cycloalkyl.
  • R 1 and R 2 are, independently, H, or saturated or unsaturated aliphatic groups.
  • the aliphatic groups can be branched or unbranched. Representative groups include alkyl, alkenyl, and cycloalkyl.
  • R- and R 2 represent structures recognized in the art as being amine; alkylamines (including primary, secondary, and tertiary amines), or extended versions thereof-herein termed "polyalkylamines". It is understood that both alkylamine and polyalkylamine groups as defined herein may include one or more carbon-carbon double bonds and the use of such alkenylamines is therefore within the practice of the invention.
  • Representative alkylamines include: (a) - NH-(CH ) Z — where z is other than 0; (b) - f[CH 3 (CH 2 ) y ]N] -(CH 2 ) Z - where z is other than 0; and
  • R* and R 2 are tertiary amines, such as is represented in Structure (c) above, it is understood that a hydrogen atom corresponding to either R 3 or R , as appropriate, may or may not be present since such hydrogen atoms correspond to the N:H(+) structure whose level of protonation will vary according to pH.
  • polyalkylamine as referred to herein defines a polymeric structure in which at least two alkylamines are joined.
  • the alkylamine units that are so joined may be primary or secondary, and the polyalkylamines that result may contain primary, secondary, or tertiary N-atoms.
  • the alkylamine as referred to herein defines a polymeric structure in which at least two alkylamines are joined.
  • the alkylamine units that are so joined may be primary or secondary, and the polyalkylamines that result may contain primary, secondary, or tertiary N-atoms.
  • (sub)units may be saturated or unsaturated, and therefore the term
  • alkylamine encompasses alkenylamines in the description of the invention.
  • Representative resultant polyalkylamines include: (d) — [NH- , where z is other than 0, and q is 2 or higher; (e) — [NH- — , where y and z are each other than 0, and p and q are each other than 0; (1) - [NH-(CH 2 )( x )] n -[NH-(CH 2 )( y )] p - [NH- ⁇ , where x, y, and z are each other than 0, and n, p and q are each other than 0; (g) - [NH-(CH 2 ) (w) ] m - [NH-(CH 2 ) ( ⁇ ) ] n ⁇ [NH-
  • R* and R 2 independently, can be — NH— , an alkylamine, or a polyalkylamine, and can be the same or different from each other, except that both R 1 and R 2 cannot be -Nil- in order to (1) preserve the "T- shape" of the resultant compound, and (2) to provide for the stability thereof. It is preferred that - in combination- the combined backbone length of R 3 R' (or of R 4 R 2 ) be less than about 40 atoms of nitrogen and carbon, more preferrably less than about 30 atoms of nitrogen and carbon.
  • R ⁇ group adjacent to R-' includes a terminal nitrogen atom that defines a tertiary center
  • a quaternary amine is formed (at that nitrogen atom of R' ) if R 3 is an aliphatic group, and a tertiary amine remains (at that nitrogen atom of R-) if R 3 is H.
  • R R' — (or R 4 R ⁇ — ) structures to atom "X" is through the right hand side (as depicted) of the R 3 R' — , that is, through a CH 2 — moiety.
  • the coefficents i.e. v, w, x, y, and z and 1, m, n, p, and q
  • whole numbers For the purposes of the invention, "whole number" means 0 and the natural numbers
  • amphiphiles of the invention including those represented by formulas (a) to (1), it is noted that there are certain preferences concerning the design of such groups depending on whether atom 'X" as it is shown according to structure (I) above, is a nitrogen atom or a carbon atom. If
  • a polyalkylamine may be represented, for example, by the formulas above, although many more structures (such structures being within the scope of the invention) can be depicted by extending the number of, or types or combinations of, alkylamine subunits within the amphiphile structure. That further such variations can be made is apparent to those skilled in the art.
  • a polyalkylamine group (or resultant R 3 R* group) that is very long may interfere, for example, with the solubility of the resultant amphiphile, or interfere with its ability to stably interact with the biologically active molecule selected for intracellular delivery.
  • polyalkylamines (or resultant R R' groups) having a backbone length of about 40 nitrogen and carbon atoms, or more may not be suitable for inclusion in amphiphiles.
  • its properties may be determined by experimentation, and its use is nonetheless within the practice of the invention.
  • amphiphiles of Group II capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (II),
  • Z is a steroid
  • X is a carbon atom or a nitrogen atom
  • Y is a linking group or Y is absent
  • R 3 is an amino acid, a derivatized amino acid, H or alkyl
  • R- is —Nil- , an alkylamine, or a polyalkylamine
  • R 4 is an amino acid, a derivatized amino acid, H or alkyl
  • R 2 is — NH- , an alkylamine, or a polyalkylamine; and wherein R* is the same or is different from R 2 , except that both R ⁇ and
  • R 2 cannot be --NH-.
  • amphiphiles provided according to Group II include amphiphiles 87, 91, 93, 95, 97, 99, 100, and 103. With respect to the structural features of these amphiphiles, and the other amphiphiles of Group II, the following should be considered.
  • the steroid group may be selected according to the criteria defined above for the Category A/Group I amphiphiles. Accordingly, preferred amphiphiles include those selected from 3- sterols, wherein the sterol molecule is linked by the 3-O- group thereof, or by N in replacement thereof, to "Y".
  • group Y may be absent.
  • Representative N- acylamino groups include an N-Acyl serine ( No. 87), an N-Acyl glycine (No. 91), and an N-Acyl aspartic acid ( No. 103). With respect to the use of N- Acyl aspartic acid in amphiphile No. 103, it is noted that, as provided, the gamma carboxyl thereof is further derivatized to an additional alkylamine moiety.
  • R 3 and R 4 represent H or alkyl, or may be natural or artificial amino acids including derivatives of either.
  • Representative examples of R 3 or R 4 amino acid groups include those derived from tryptophan ( No. 97) and from arginine ( No. 95).
  • amphiphiles of Category B/ Group III capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (III), wherein:
  • Z is an alkylamine or a dialkylamine, linked by the N-atom thereof, to Y, or directly to X if Y is absent, wherein if Z is a dialkylamine, the alkyl groups thereof can be the same or different;
  • X is a carbon atom or a nitrogen atom
  • Y is a short linking group , or Y is absent;
  • R 3 is H, or a saturated or unsaturated aliphatic group
  • R' is — NH- , an alkylamine, or a polyalkylamine
  • R 4 is II, or a saturated or unsaturated aliphatic group
  • R 2 is —NH— , an alkylamine, or a polyalkylamine; and wherein R is the same or is different from R 2 , except that both R and
  • R 2 cannot be -NH-.
  • Representative cationic amphiphiles according to the practice of the invention that contain an alkyl amine or dialkylamine as lipophilic group include, for example, N,N-dioctadecyllysineamide; N ' , N ' -dioctadecy l- 1 ,2,6- triaminohexane; N,N-didodecyllysineamide; N,N- didecyllysineamide; spermidine- N,N- dioctadecyl urea; N-myristyllysineamide; and N- (dioctyldecylaminoethyl)-lysineamide .
  • amphiphiles are depicted ( Figure 6) as amphiphiles 43, 47, 56, 60, and 73. With respect to the structural features of these amphiphiles, and the other amphiphiles of Group III, the following should be considered.
  • an alkyl chain(s) of the group should not be so large in molecular weight that it interferes with the solubility of the amphiphile, or interferes with its ability to interact with plasmid DNA.
  • an alkyl chain of an alkylamine or dialkylamine may include one or more points of unsaturation.
  • R groups R-* , R 2 , R 3 , and R 4 follows that disclosed for the Group I amphiphiles, and these R groups may be selected, for example, from Table I.
  • amphiphiles of Group IV capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (IV),
  • a and B are independently O, N or S;
  • R-> and R" are independently alkyl or acyl groups and may be saturated or contain sites of unsaturation;
  • E is a carbon atom or a nitrogen atom
  • R 3 is H, or a saturated or unsaturated aliphatic group
  • R' is — NH— , an alkylamine, or a polyalkylamine
  • R 4 is H, or a saturated or unsaturated aliphatic group
  • R 2 is — NH— , an alkylamine, or a polyalkylamine; and wherein R' is the same or is different from R 2 , except that both R and
  • R 2 cannot be -NH-.
  • amphiphiles of Group IV include Nos. 64, 76, 85, 89, 94, 98, 102, 105, 1 10, and 1 1 1. With respect to the structural features of these amphiphiles, and the other amphiphiles of Group IV, the following should be considered.
  • group "E” represents a carbon atom or a nitrogen atom.
  • R-- and R" are independently alkyl or acyl groups, preferrably containing about 8 to about 30 carbon atoms, and such groups may contain one or more points of unsaturation.
  • group D may be absent (amphiphile No.94). Additional linkers may be selected based on the teachings provided with respect to Groups I, II, and III above, and based upon the in vivo test date derived ( Figure 15), it is preferred that the linker D be short or absent.
  • the invention also provides for formulations of non T-shaped/steroid-based amphiphiles (Category C), and use thereof, such as
  • Additional Category C amphiphiles that may be used according to the practice of the invention include, for example, those described in U.S. Patent 5, 283,185 to Epand et al. including 3 ⁇ [N-Ol ⁇ N 1 - dimethylaminoethane)- carbamoylj cholesterol, termed "DC-chol"; cholestryl-3 ⁇ - carboxamidoethylene trimethylammonium iodide; cholestryl -3 ⁇ - oxysuccinamideoethylene trimethylammonium iodide, and the like including ⁇ - alanyl cholesterol.
  • amphiphiles include those that may be patterned upon DOTAP, ChoTB, and ChoSC (Leventis et al., Biochemica et Biophysica Acta, 1023, 1990, pp. 124-132) but not if provided in quaternary form.
  • amphiphiles An additional class of such amphiphiles is provided by the N ' - (alkylamine) linked cationic facial amphiphiles described in Walker et al., Proceedings of the National Academy of Sciences, USA , 93, 1996, 1585-1590, including, for example, structures described in Table 1 thereof .
  • Category D - non T-shaped/ non steroid-based cationic amphiphiles
  • the invention also provides for diverse formulations of non T- shaped/non steroid-based amphiphiles (Category D),and use thereof, such as may be formulated with:
  • cationic amphiphiles patterned on N-[l(2,3-dioleyloxy)propylJ-N,N,N- trimethylammonium chloride ("DOTMA"), but being non-quaternary variants thereof, that can be further protonated ( see Feigner, et al., Proc. Natl. Acad. Sci. USA, 84, 7413-7417, 1987, and U.S. Patent 4,897,355 to Eppstein et al. ;
  • DOTMA N-[l(2,3-dioleyloxy)propylJ-N,N,N- trimethylammonium chloride
  • DOPE dioleoylphosphatidylethanolamine
  • lyso-phosphatidylethanolamines other phosphatidyl- ethanolamines phosphatidylcholines
  • lyso-phosphatidylcholines phosphatidylcholines
  • cholesterol Typically, a preferred molar ratio of cationic amphiphile to colipid is about 1 :1. However, it is within the practice of the invention to vary this ratio (see Example 3 below), including also over a considerable range.
  • amphiphiles of the invention are active as transfectants without co-lipid. Accordingly, the practice of the present invention is neither to be considered limited by theories as to co-lipid participation in intracellular delivery mechanisms, nor to require the involvement of co-lipids.
  • amphiphile No.67 it has been observed that a mixture of amphiphile and DOPE, in chloroform solvent, does not appear to participate in such reactions.
  • preparing the amphiphile and co-lipid in an aqueous solution where bilayer-containing structures such as liposomes can form will permit transacylation.
  • amphiphile and co-lipid are dried down to a thin film, such as from chloroform (thereby placing the 2 species in intimate contact), then transacylation also occurs, possibly as a result of entropic effects. It is expected that these phenomena would also apply to lyophilized amphiphile/DOPE preparations.
  • amphiphile /DOPE preparations at very cold temperatures, such as -70 degrees C.
  • Preparation of amphiphile No. 67 as a mono, di, or tri acetate salt has also been determined to slow transacylations.
  • compositions of the present invention may or may not contain such transacylation byproducts, or other byproducts, and that the presence of such byproducts does not prevent the therapeutic use of the compositions containing them. Rather use of such compositions is within the practice of the invention, and such compositions and the novel molecular species thereof are therefore specifically claimed.
  • Preparation of Pharmaceutical Compositions and Administration Thereof The present invention provides for pharmaceutical compositions that facilitate intracellular delivery of therapeutically effective amounts of biologically active molecules.
  • Pharmaceutical compositions of the invention facilitate entry of biologically active molecules into tissues and organs such as the gastric mucosa, heart, lung, and solid tumors.
  • compositions of the invention facilitate entry of biologically active molecules into cells that are maintained in vitro , such as in tissue culture.
  • the amphiphilic nature of the compounds of the invention enables them to associate with the lipids of cell membranes, other cell surface molecules, and tissue surfaces, and to fuse or to attach thereto.
  • One type of structure that can be formed by amphiphiles is the liposome, a vesicle formed into a more or less spherical bilayer, that is stable in biological fluids and can entrap biological molecules targeted for intracellular delivery.
  • liposomal compositions permit biologically active molecules carried therewith to gain access to the interior of a cell through one or more cell processes including endocytosis and pinocytosis.
  • the cationic amphiphiles of the invention need not form highly organized vesicles in order to be effective, and in fact can assume (with the biologically active molecules to which they bind) a wide variety of loosely organized structures. Any of such structures can be present in pharmaceutical preparations of the invention and can contribute to the effectivenesss thereof.
  • Biologically active molecules that can be provided intracellularly in therapeutic amounts using the amphiphiles of the invention include:
  • vesicles or other structures formed from numerous of the cationic amphiphiles are not preferred by those skilled in the art in order to deliver low molecular weight biologically active molecules. Although not a preferred embodiment of the present invention, it is nonetheless within the practice of the invention to deliver such low molecular weight molecules intracellularly.
  • Representative of the types of low molecular weight biologically active molecules that can be delivered include hormones and antibiotics.
  • Cationic amphiphile species of the invention may be blended so that two or more species thereof are used, in combination, to facilitate entry of biologically active molecules into target cells and/or into subcellular compartments thereof.
  • Cationic amphiphiles of the invention can also be blended for such use with amphiphiles that are known in the art.
  • Dosages of the pharmaceutical compositions of the invention will vary, depending on factors such as half-life of the biologically-active molecule, potency of the biologically-active molecule, half-life of the amphiphile(s), any potential adverse effects of the amphiphile(s) or of degradation products thereof, the route of administration, the condition of the patient, and the like. Such factors are capable of determination by those skilled in the art.
  • compositions of the invention A variety of methods of administration may be used to provide highly accurate dosages of the pharmaceutical compositions of the invention.
  • Such preparations can be administered orally, parenterally, topically, transmucosally, or by injection of a preparation into a body cavity of the patient, or by using a sustained-release formulation containing a biodegradable material, or by onsite delivery using additional micelles, gels and liposomes.
  • Nebulizing devices, powder inhalers, and aerosolized solutions are representative of methods that may be used to administer such preparations to the respiratory tract.
  • the therapeutic compositions of the invention can in general be formulated with excipients (such as the carbohydrates lactose, trehalose, sucrose, mannitol, maltose or galactose) and may also be lyophilized (and then rehydrated) in the presence of such excipients prior to use.
  • excipients such as the carbohydrates lactose, trehalose, sucrose, mannitol, maltose or galactose
  • Conditions of optimized formulation for each amphiphile of the invention are capable of determination by those skilled in the pharmaceutical art.
  • sucrose is preferred over mannitol in order to prevent formation of amphiphile/DNA aggregates, particularly as the concentration of DNA is increased therein. Addition of such excipients maintains the consistency of lyophilized pharmaceutical compositions during storage, and prevent difficulties such as aggregation, or insolubity, that may likely occur upon rehydration from the lyophilized state.
  • a principal aspect of the invention involves providing a composition that comprises a biologically active molecule (for example, a polynucleotide) and one or more cationic amphiphiles (including optionally one or more co-lipids), and then maintaining said composition in the presence of one ore more excipients as aforementioned, said resultant composition being in liquid or solid (preferably lyophilized) form, so that: (1) the therapeutic activity of the biologically active molecules is substantially preserved; (2) the transfection-enhancing nature of the amphiphile( or of amphiphile/ DNA complex) is maintained.
  • the excipients stabilize the interaction (complexes)of the amphiphile and biologically active molecule through one or more effects including:
  • an additional and valuable characteristic of the amphiphiles of the invention is that any such potentially adverse effect can be minimized owing to the greatly enhanced in vivo activity of the amphiphiles of the invention in comparison with amphiphilic compounds known in the art. Without being limited as to theory, it is believed that osmotic stress ( at low total solute concentration) may contribute positively to the successful transfection of polynucleotides into cells in vivo .
  • Such a stress may occur when the pharmaceutical composition, provided in unbuffered water, contacts the target cells.
  • Use of such otherwise preferred compositions may therefore be incompatible with treating target tissues that already are stressed, such as has damaged lung tissue of a cystic fibrosis patient. Accordingly, and using sucrose as an example, selection of concentrations of this excipient that range from about 15 mM to about 200 mM provide a compromise betweeen the goals of (1) stabilizing the pharmaceutical composition to storage and (2) mimizing any effects that high concentrations of solutes in the composition may have on transfection performance.
  • An additional aspect of the invention concerns the protonation state of the cationic amphiphiles of the invention prior to their contacting a biological molecule such as plasmid DNA in order to form a therapeutic composition. It is within the practice of the invention to utilize fully protonated, partially protonated, or free base forms of the amphiphiles in order to form such therapeutic compositions. However, for purposes of this invention, the use of a partially protonated cationic amphiphile, or free based form, is preferred. The preparation of the cationic amphiphile in a non-salt form, i.e., in the absence of a source of protons during preparation, is desired.
  • amphiphile may be subjected to various protonation states during preparation, however, a non-fully protonated state is desired at the time of its combination with a neutral co-lipid (such as DOPE), or with an active biological molecule, for example a DNA plasmid.
  • a neutral co-lipid such as DOPE
  • an active biological molecule for example a DNA plasmid.
  • co-lipid itself may provide a source of protons to the cationic amphilphile. However, the contribution of such protons , under the conditions of manipulation used herein, is not expected to fully protonate the cationic amphiphile.
  • amphiphile No. 67 spermine cholesterol carbamate
  • amphiphile No. 37 Similar results were observed for amphiphile No. 37 (see Example 11) where provision of the amphiphile in free base form, prior to its contacting co- lipid and plasmid DNA, resulted in an approximate 50-fold improvement in reporter gene expression.
  • N , N - dicarbobenzoxyspermidine (61% yield, m.p. 104 - 105° C) was prepared according to the procedure of S. K. Sharma, M. J. Miller, and S. M. Payne, J. Med. Chem., 1989, 32, 357-367.
  • the N 1 , N 8 - dicarbobenzoxyspermidine (25 g , 60.5 mmol) and triethylamine (25 ml, 178 mmol) were dissolved in 625 ml of anhydrous methylene chloride, cooled to 0
  • Benzylchloroformate (1.76g, 1.5 ml, 10.36 mmol) was dissolved in methylene chloride (5 ml) and placed in a three neck flask under a nitrogen atmosphere.
  • Imidazole (11.4 g, 20.6 mmol) was dissolved in methylene chloride (20 ml) and placed in an addition funnel. The three neck flask was cooled to
  • Cholesteryl chloroformate (964 mg, 2.15 mmol) was dissolved in chloroform (10 ml) and added dropwise to a cooled (0°C) solution of N ⁇ ,N ⁇ 2 - diCBZ spermine (l .Olg, 2.15 mmol), triethylamine (1 ml) in chloroform (10 ml). The reaction was allowed to warm to room temperature and stirred for 2 hours. To the reaction solution was added water (25 ml) and chloroform (25 ml). The layers were separated and the organic fraction dried over magnesium sulfate.
  • the hydrogenolysis should be carried out under acidic conditions, in order to minimize the poisoning of the catalyst.
  • Urea analogs - such as spermine or spermidine cholestamine urea - can be prepared by a sequence of reactions well known to those versed in the art of organic synthesis. For example an amine can be treated with an equal molar amount of carbonyldiimidazole followed by the addition of a second amine to give the desired urea.
  • C N,N Bis (3-aminopropyl)-O-cholesteryl -3-carbamate
  • Bis (3-CBZ aminopropyl) amine was prepared using the method described above for N ,N 1 -diCBZ-spermine, except that N-(3-aminopropyl)l,3- propanediamine was substituted for spermine as reactant.
  • the pure product was isolated in 34 % yield by silica gel flash chromatography using as solvent CHC1 3 / MeOH/ NH 4 OH 80/20/0.5.
  • the Bis (3-CBZ aminopropyl) amine so prepared was then reacted with cholesteryl chloroformate according to the method described above for the synthesis of N*, N -DiCBZ -N 4 -spermidine cholesteryl carbamate.
  • the pure product (N,N Bis ( 3-CBZ aminopropyl)-O-cholesteryl-3-carbamate) was obtained in 73% yield.
  • N,N Bis (6-aminohexyl)-O-cholesteryl-3-carbamate ( Figure 1 , No. 70) was prepared according to the following procedure.
  • Bis (6-CBZ aminohexyl) amine was prepared using the method described above for N ,N ⁇ 2 -diCBZ-spermine, except that Bis(hexamethylene)triamine was substituted for spermine as reactant. Pure product was isolated in 24% yield by recrystallization from toluene.
  • Lysine 3-N- dihydrocholesteryl carbamate ( Figure 1 , panel C) was prepared according to the following procedure.
  • the 3-phthalimidochoIestane (5.40 g, 9.75 mmol) was dissolved in 60 mL of methanol and anhydrous hydrazine (3.1 ml, 99 mmol) was added. The reaction mixture was stirred and heated at reflux under a nitrogen atmosphere for 4 hr. This mixture was then cooled to room temperature, 3.1 mL of concentrated HC1 was added and the resulting mixture was heated at reflux overnight. Upon cooling to ambient temperature, 100 ml of diethyl ether and 50 ml of 1 N NaOH were added (final pH of 10.1) and the layers were separated. The aqueous layer was extracted with 50 ml of diethyl ether and the combined organic fractions were filtered. The filtrate was concentrated in vacuo and the residue was purified by silica gel chromatography (chloroform / methanol 90 / 10) to give 2.24 g of 3-aminocholestane in 59 % yield.
  • Raney Nickel 50% slurry (1.2 g, Aldrich) was placed in a Parr Bomb with 1M
  • the vesicle was evacuated and placed under Argon pressure (80-100 psi), three times and then evacuated and placed under Hydrogen pressure (100 psi), three times.
  • the reaction was stirred under hydrogen pressure (100 psi) at room temperature for 72h.
  • the vesicle was evacuated and placed under argon pressure.
  • the catalyst was removed by filtration.
  • the filtrate was concentrated in vacuo .
  • the resulting oil was dissolved in 2:1 CH 2 C1 2 : MeOH
  • Nl ,N8-Bis(3-aminopropyl)-N 4 -spermidine cholesteryl carbamate (G) N(N 4 -3-aminopropyl-spermidine) cholesteryl carbamate
  • N(N 4 -3-aminopropyl-spermidine) cholesteryl carbamate ( Figure 1 , No. 78) was prepared as follows:
  • N°-dicarbobenzoxyspermidine (1.0 g, 2.4 mmol) was dissolved in
  • N 8 - dicarbobenzoxyspermidine 300 mg, 0.66 mmol
  • CH C1 2 Et 3 N under N 2
  • Cholesteryl chloro formate 326 mg, 0.726 mmol, Aldrich
  • CH2C1 2 was added to the reaction dropwise.
  • the mixture was stirred for 2h at room temperature.
  • CH 2 C1 25 mL
  • H O 10 mL
  • the layers were separated.
  • the organic layer was dried with MgSO 4 and filtered. The filtrate was concentrated in vacuo to give 640 mg of crude product.
  • N-[N ,N ,N " Tris (3-aminopropyl) spermidine] cholesteryl carbamate ( Figure 1 , No. 96) was prepared by reacting N-(N 4 -3-aminopropylspermidine) cholesteryl carbamate with acrylonitrile (90% yield) and subsequent reduction of the di adduct with Raney nickel (75 % yield) as described for the preparation of N',N 8 Bis(3-aminopropyl)-N4-spermidine cholesteryl carbamate.
  • N,N-Bis(4-aminobutyl) cholesteryl carbamate ( Figure 1 , No. 82) was prepared as follows.
  • N,N-Bis (3-cyanopropyl) benzylamine (3.7 g, 17.8 mmol) was dissolved in EtOH (150 mL) and Acetic acid (4 mL) was added. This solution was added to 10% Pd on carbon (400 mg) under N2. The mixture was placed under H2 and the reaction stirred for 18 h at room temperature. The reaction was placed under N2. The catalyst was filtered off and washed with EtOH
  • N,N-Bis(N'-3-aminopropyl-4-aminobutyl) cholesteryl carbamate ( Figure 1, No. 83) was prepared by reacting N,N " Bis(4-aminobutyl) cholesteryl carbamate with acrylonitrile (82% yield) and subsequent reduction of the di acrylonitrile adduct with Raney nickel (81 % yield) as described for the preparation of N ⁇ N 8 -Bis(3-aminopropyl)-N 4 -spermidine cholesteryl carbamate.
  • K N 4spermidine cholesteryl carboxamide
  • N( a ),N( e ),N( e ) (alpha, epsilon, epsilon) -tricarbobenzoxyArginine in CH 2 C1 2 (25 mL) was added N-hydroxysuccinimide (100 mg, 0.89 mmol) and dicyclohexylcarbodiimide (240 mg, 0.89 mmol). The mixture was stirred under N 2 at room temperature for 2.5 hours.
  • N,N- dioctadecy llysineamide ( Figure 6, No.73) was prepared according to the following procedure. N,N-dioctadecylamine (1.35 g, 2.58 mmol, Fluka) and L-Na,Ne-diBOClysine N-hydroxysuccinimide ester ( 1.00 g, 2.58 mmol, Sigma) were combined in 15 ml of methylene chloride and 2 ml triethylamine was added. The reaction mixture was heated briefly to effect complete dissolution and then stirred at ambient temperature overnight. Water (20 ml)
  • N,N-dioctadecyl-Na,Ne-diBOC lysineamide(l .59 g) was dissolved in 25 ml of chloroform and stirred for 2 hr. while FIC1 gas was bubbled through the solution. This solution was purged with N2 gas and concentrated in vacuo. N,N -dioctadecyllysineamide (1.34 g) was obtained in
  • N ,N -Dioctadecy l-L2,6-triaminohexane (Figure 6, No. 47) was prepared as follows. To N,N-Dioctadecyl-Na,Ne-diBOClysineamide (760 mg,
  • the resulting reaction mixture was stirred at ambient temperature for 2 hr and concentrated in vacuo .
  • the residue was dissolved in 25 ml of water and 25 mL of methylene chloride and adjusted to pH 10 with approximately 2 ml of concentrated ammonium hydroxide.
  • the layers were separated and the aqueous layer was extracted a second time with
  • the crude material was purified by flash column chromatography (300 g silica gel) eluting with 3% ethyl acetate/ hexanes.
  • the desired product was isolated as a pale yellow oil and characterized by * H NMR as 3-OBn-l,2-dilaurylglycerol (1.70 g, 60%).
  • 3-OBn-l,2- dilaurylglycerol (1.70 g, 3.28 mmol) in ethanol (100 mL) was stirred with 10% Pd/C (250 mg, 15 wt%) under a hydrogen atmosphere for 24 hours.
  • the reaction was flushed with nitrogen and filtered through Celite, rinsing with ethanol, to remove the catalyst.
  • the filtrate was reduced in vacuo to a solid.
  • the crude material was purified by flash column chromatography (140 g silica gel) eluting with 10% ethyl acetate/ hexanes.
  • the desired product was isolated as a white solid and characterized by 'H NMR as 1,2-dilaurylglycerol (1.23g, 88%).
  • the desired product was isolated as an oil and characterized by - ⁇ NMR as l-(N -(N ⁇ ,N ⁇ 2 -di-CBz- spermine))-2,3-dilaurylglycerol carbamate (188 mg, 15%).
  • the 1-(N 4 -(N ,N ⁇ 2 -di-CBz-spermine))-2,3-dilaurylglycerol carbamate (188 mg, 0.203 mmol) was dissolved in glacial acetic acid (10 mL) and stirred with 10% Pd/C (45 mg, 24 wt %) under a hydrogen atmosphere for 5 hours.
  • the catalyst was removed by vacuum filtration rinsing with 10% acetic acid/ ethyl acetate (10 mL)
  • the filtrate was reduced to an oil by rotary evaporation.
  • the resulting oil was dissolved in 10% methanol/ chloroform (85 mL) and was washed with 1M NaOH (15 mL) and dH2O (10 mL).
  • the organic layer was separated, dried over magnesium sulfate, filtered and reduced in vacuo to an oil.
  • the product was characterized by ⁇ NMR as l-(N -spermine)-2,3- dilaurylglycerol carbamate (125 mg, 94%).
  • amphiphiles of the invention may be prepared according to procedures that are within the knowledge of those skilled in art.
  • Example 1 Cell Transfection Assay
  • amphiphile/co-lipid compositions were stored at low temperature, such as - 70 degrees C, until use.
  • the lipid film was then hydrated with sterile deionized water (1 ml) for 10 minutes, and then vortexed for 1 minute ( sonication for 10 to 20 seconds in a bath sonicator may also be used, and sonication has proved useful for other amphiphiles such as DC-chol).
  • the resulting suspension was then diluted with 4 ml of water to yield a solution that is 670 ⁇ M in cationic amphiphile and 670 ⁇ M in neutral colipid.
  • DNA solutions (165 ⁇ l, 960 ⁇ M) were pipetted into 8 wells containing OptiMEM (165 ⁇ l), and the resulting 480 ⁇ M solutions were then serially diluted 7 times to generate 8 separate 165 ⁇ l solutions from each well, with the concentrations of DNA in the wells ranging from 480 ⁇ M to 3.75 ⁇ M.
  • the 64 test solutions (cationic amphiphile: neutral lipid) were then combined with the 64 DNA solutions to give separate mixtures in 64 wells, each having a volume of 330 ⁇ l, with DNA concentrations ranging from 240 ⁇ M to 1.875 ⁇ M along one axis, and lipid concentrations ranging from 167 ⁇ M to 1.32 ⁇ M along the other axis.
  • 64 solutions were prepared in all, each having a different amphiphile: DNA ratio and/or concentration.
  • the solutions of DNA and amphiphile were allowed to stand for 15 to 30 minutes in order to allow complex formation.
  • -1 A CFT-1 cell line (human cystic fibrosis bronchial epithelial cells immortalized with papillomavirus) provided by Dr.
  • CFTR cystic fibrosis transmembrane conductance regulator
  • the ⁇ F508 mutation is the most common mutation associated with cystic fibrosis disease.
  • the properties of the ⁇ F508 mutation and the genetics of cystic fibrosis disease see, in particular, Cheng et al., Cell, 63, 827-834 (1990). See also Riordan et al., Science, 245, 1066-1073 (1989); published European Patent Application No. 91301819.8 of Gregory et al., bearing publication number 0 446 017 Al ; and Gregory et al., Nature, 347, 382-385 (1990).
  • the cells were cultured in Hams Fl 2 nutrient media (Gibco/ BRL No. 31765-027) supplemented with 2% fetal bovine serum ("FBS", Irvine Scientific, No. 3000) and 7 additional supplements. Cells were then plated into 96-well tissue culture plates at a density of approximately 7,500 cells/well. Before being used in the assay, cells were allowed to grow for periods of 5-7 days until a confluent pattern had been achieved.
  • Hams Fl 2 nutrient media Gibco/ BRL No. 31765-027
  • FBS Irvine Scientific, No. 3000
  • the resultant medium was removed from the plates and the cells washed with phosphate buffered saline. Lysis buffer (50 ⁇ l, 250 mM Tris-HCl, pH 8.0, 0.15% Triton X-100) was then added, and the cells were lysed for 30 minutes. The 96-well plates were carefully vortexed for 10 seconds to dislodge the cells and cell debris, and 5 ⁇ l volumes of lysate from each well were transferred to a plate containing lOO ⁇ l volumes of Coomassie Plus® protein assay reagent (Pierce Company, No. 23236). The protein assay plates were read by a Bio-Rad Model 450 plate-reader containing a 595nm filter, with a protein standard curve included in every assay.
  • Lysis buffer 50 ⁇ l, 250 mM Tris-HCl, pH 8.0, 0.15% Triton X-100
  • the level of ⁇ -galactosidase activity in each well was measured by adding phosphate buffered saline (50 ⁇ l) to the remaining lysates, followed by addition of a buffered solution consisting of chlorophenol red galactopyranoside (100 ⁇ l, 1 mg per ml, Calbiochem No. 220588), 60 mM disodium hydrogen phosphate pH 8.0, 1 mM magnesium sulfate, 10 mM potassium chloride, and 50 mM 2-mercaptoethanol.
  • the chlorophenol red galactopyranoside following enzymatic ( ⁇ -galactosidase) hydrolysis, gave a red color which was detected by a plate-reader containing a 570 nm filter.
  • a ⁇ - galactosidase (Sigma No. G6512) standard curve was included to calibrate every assay.
  • optical data determined by the plate-reader allowed determination of ⁇ -galactosidase activity and protein content.
  • DMRIE l,2-dimyristyloxypropyl-3-
  • compounds of the invention are particularly effective in transfecting airway epithelial cells and inducing therein ⁇ -galactosidase expression.
  • DMRIE DMRIE
  • DOPE spermidine cholesterol carbamate
  • DOPE mixture also 1 :1
  • transfection efficiency improved by a factor of about 5 see, for example, Figures 13, 14 and 15).
  • CFT- 1 Immortalized human cystic fibrosis airway cells
  • pCMV-CFTR plasmid is a construct containing the encoding sequence for CFTR and the following regulatory elements, a CMV promoter and enhancer, and an SV40 polyadenylation signal. Additional constructs suitable for the practice of this example include pMT-CFTR, Cheng et al.. Cell, 63, 827-834 (1990).
  • the complex used was 10.5 ⁇ molar of spermidine cholesterol carbamate (also of DOPE) and 30 ⁇ molar of pCMV-CFTR based on nucleotide.
  • Fluorescence of the SPQ molecule in individual cells was measured using an inverted microscope, Nikon, , a digital imaging system from Universal Imaging, and an ICCD camera, Hamamatsu, Inc.. Cells were selected for analysis without prior knowledge of their expected rate-of-change- in- fluorescence characteristics.
  • This assay was used to assess the ability of the cationic amphiphiles of the invention to transfect cells in vivo from live specimens.
  • the lungs of balb/c mice were instilled intra-nasally (the procedure can also be performed trans-tracheally) with 100 ⁇ l of cationic amphiphile: DNA complex, which was allowed to form during a 15-minute period prior to administration according to the following procedure.
  • the amphiphile (premixed with co-lipid, see below) was hydrated in water for 10 minutes, a period sufficient to yield a suspension at twice the final concentration required. This was vortexed for two minutes and aliquoted to provide 55 microliter quantities for each mouse to be instilled.
  • DNA encoding the reporter (CAT) gene was diluted with water to a concentration twice the required final concentration, and then aliquoted at 55 microliters for each mouse to be instilled. The lipid was gently combined with the DNA (in a polystyrene tube), and the complex allowed to form for 15 minutes before the mice were instilled therewith.
  • the plasmid used (pCMVHI-CAT, see Example 4) provides an encoding DNA for chloramphenicol transfcrase enzyme. Specifics on the amphiphile:DNA complexes are provided below.
  • mice Two days following transfection, mice were sacrificed, and the lungs and trachea removed, weighed, and homogenized in a buffer solution (250 mM Tris, pH 7.8, 5mM EDTA). The homogenate was clarified by centrifugation, and the deacetylases therein were inactivated by heat treatment at 70 °C for 10 minutes. Lysate was incubated overnight with acelyl coenzyme A and C' 4 — chloramphenicol. CAT enzyme activity was then visualized by thin layer chromatography ("TLC") following an ethyl acetate extraction. Enzyme activity was quantitated by comparison with a CAT standard curve.
  • TLC thin layer chromatography
  • the presence of the enzyme CAT will cause an acetyl group to be transferred from acetylcoenzyme A to C 14 —chloramphenicol.
  • the acetylated radiolabeled chloramphenicol migrates faster on a TLC plate and thus its presence can be detected.
  • the amount of CAT that had been necessary to generate the determined amount of acetylated chloramphenicol can then be calculated from standards.
  • the activity of spermidine cholesterol carbamate (amphiphile No.53) was determined in the CAT assay in relation to the recognized transfection reagents DMRIE and DC-Choi.
  • Figure 10 demonstrates dramatically (as ng CAT activity per 100 mg tissue) the enhanced ability of spermidine cholesterol carbamate (amphiphile No. 53) to transfect cells in vivo, which enhancement is about 20-fold, or greater, in this assay.
  • activity was measured as ng CAT enzyme per 100 mg lung tissue.
  • DMRIE a well known transfectant
  • plasmid DNA 1.7 mM DMRIE, 1.7 mM DOPE, 1.2 mM plasmid DNA measured as nucleotide
  • the transfection solution for spermidine cholesterol carbamate contained 6mM DNA measured as concentration of nucleotide, and 1.5 mM of cationic amphiphile.
  • each amphiphile had also been premixed with DOPE, in this case at 1 : 1 molar ratio.
  • the molar ratio of DC-chol to DOPE was 3:2, and the concentrations of cationic amphiphile and of DNA (as nucleotide) were 1.3 mM and 0.9 mM, respectively.
  • the molar ratio of DMRIE to DOPE was 1 : 1 and the concentrations of cationic amphiphile and of DNA were 1.7 mM and 1.2 mM, respectively. These concentrations (and concentration ratios) for each amphiphile, and colipid and DNA, had been determined to be optimal for transfection for that respective amphiphile, and accordingly were used as the basis for the comparison presented herein.
  • spermidine cholesterol carbamate (amphiphile No. 53)
  • optimization experiments were also performed to determine preferred concentrations of plasmid for a particular amphiphile concentration (see Figure 1 1), and also to determine preferred concentrations of the same amphiphile in relation to a particular plasmid concentration (see Figure 12).
  • Transfection efficiency was optimal at an amphiphile concentration of 1.5 mM (DOPE also being present at 1.5 mM), and about 6 mM (by nucleotide) of plasmid, or about at a ratio of 1 :4. It was noted, however, that concentrations of about 0.75 mM of amphiphile, and 3.0 mM of plasmid were less toxic to the target cells.
  • Intra-nasal transfection with pCMVHI-CAT vector was also performed in mice using spermidine cholesterol carbamate as cationic amphiphile but with cholesterol as co-lipid.
  • concentrations of spermidine cholesterol carbamate tested were between 1.0 and 1.5 mM (cholesterol being present at a 1 :1 molar ratio in each case, with the mixing of amphiphile and co-lipid being performed as above).
  • the DNA concentration measured as nucleotide concentration
  • Transfection efficiency was less effective than with DOPE as co-lipid; however, the transfections were substantially more effective than those achieved using DC-Chol/DOPE. part B
  • the ratio, for in vivo testing, of amphiphile concentration to DOPE concentration was taken from the in vitro experiments, as was the optimized ratio of amphiphile concentration to DNA concentration (see Example 1 ). Accordingly, for such amphiphiles the in vivo test concentration was fixed at ImM, thereby fixing also the co-lipid concentration.
  • the molar ratio of the amphiphile to co-lipid DOPE ranged from 1 :2 (for example, spermine cholesterol carbamate, No. 67) through 1 :1 (for example, spermidine cholesterol carbamate, No. 53) to about 2: 1 (for example, amphiphile No. 75)].
  • the concentration of plasmid DNA varied for each amphiphile species tested in order to duplicate the optimized amphiphile/DNA ratio that had been determined in vitro. part C
  • novel amphiphiles of the invention are an important contribution to the art is immediately seen by comparing their performance - as in vivo transfection enhancers - to that of closely related cationic amphiphiles that lack the novel T-shape. It has been determined that spermidine cholesterol carbamate provides a much greater level of enhancement than N -spermidine cholesteryl carbamate which contains the same number of carbon and nitrogen atoms in its cationic alkylamine component but which is linear and not "T-shaped".
  • Example 3 Following generally the procedures of Example 3, part B, and using respectively 6mM (as nucleotide), 1.5 mM, and 1.5 mM concentrations of DNA, amphiphile and of co-lipid, the transfection enhancement provided by spermidine cholesterol carbamate (amphiphile No.53) , in relation to N -spermidine cholesteryl carbamate, was determined to be about 30 fold.
  • the biologically active macromolecule is an encoding DNA.
  • plasmids novel vectors
  • part A pCMVHI-CAT
  • pCMVHI-CAT is representative of plasmid constructs useful in the practice of the invention.
  • the plasmid is provided in a form carrying a reporter gene (see Example 3), transgenes having therapeutic utility may also be included therein.
  • the pCMVHI-CAT vector is based on the commercially available vector pCMV ⁇ (Clontech).
  • the pCMV ⁇ construct has a pUC19 backbone (J. Vieira, et al., Gene , 19, 259-268, 1982) that includes a procaryotic origin of replication derived originally from pBR322.
  • Basic features of the pCMVHI- CAT plasmid (as constructed to include a nucleotide sequence coding for CAT) are as follows. Proceeding clockwise — the human cytomegalovirus immediate early gene promoter and enhancer, a fused tripartite leader from
  • adenovirus and a hybrid intron 1 adenovirus and a hybrid intron, a linker sequence, the CAT cDNA, an additional linker sequence, the late SV40 polyadenylation signal, and the pUC origin of replication and backbone that includes the gene for ampicillin resistance.
  • the human cytomegalovirus immediate early gene promoter and enhancer spans the region from nucleotides 1-639. This corresponds to the region from -522 to +72 relative to the transcriptional start site (+1) and includes almost the entire enhancer region from -524 to -118 as originally defined by Boshart et al, Cell 41 :521 -530, 1985.
  • the CAAT box is located at nucleotides 487-491 and the TATA box is at nucleotides 522-526 in pCMVHI-CAT.
  • the CAT transcript is predicted to initiate at nucleotide 549, which is the transcriptional start site of the CMV promoter.
  • the tripartite leader-hybrid intron is composed of a fused tri-partite leader from adenovirus containing a 5' splice donor signal, and a 3' splice acceptor signal derived from an IgG gene.
  • the elements in the intron are as follows: the first leader, the second leader , part of the third leader, the splice donor sequence and intron region from the first leader, and the mouse immunoglobulin gene splice donor sequence.
  • the length of the intron is 230 nucleotides.
  • the CAT coding region comprises nucleotides 1257-1913.
  • the SV40 poly A signal extends from nucleotide 2020 to 2249.
  • construction of the pCMVHI-CAT plasmid proceeded as follows.
  • the vector pCMV ⁇ (Clontech, Palo Alto, CA) was digested with Not I to excise the ⁇ -galactosidase gene.
  • the vector fragment lacking the ⁇ - galactosidase gene was isolated and ligated to form pCMV.
  • the hybrid intron ( Figure 17) was obtained from the plasmid pAD ⁇ (Clontech). The hybrid intron had been isolated from a 695 base pair Xhol- EcoRI fragment of p91023(B), see Wong et al., Science, 228, 810-815 (1985). The hybrid intron contains the fused tripartite leader from adenovirus, the
  • pAD ⁇ was digested with Pml I and Not I, and the -500 base-pair (bp) fragment was isolated, and then ligated into the Not I site of pBluescriptll KS(-) (Stratagene, La Jolla, CA) to form pBluell-HI.
  • pBluell-HI was digested with Xhol and NotI to excise the hybrid intron fragment. This fragment was ligated into the Xhol and NotI sites of pCMV, replacing the SV40 intron to form pCMVHI.
  • the CAT gene was obtained from the Chloramphenicol Acetyltransferasc GenBlock (Pharmacia, Piscataway, N.T). This 792 bp Hind III fragment was blunted with the Klenow fragment of DNA Polymerase I, then Not I linkers (New England Biolabs) were ligated to each end. After digestion with Not I to expose the Not I sticky ends, the fragment was subcloned into the Not 1 site of pCMV to form pCMV-CAT. pCMV-CAT was digested with Not I to excise the CAT fragment. The CAT fragment was ligated into pCMVHI to form pCMVHI-CAT which is depicted in Figure 16.
  • pCMVHI is suitable for therapeutic transfections
  • further performance enhancements including increased expression of transgenes
  • pCFI and pCF2 plasmids A map of pCFl/CAT is shown in Figure 18, panel A, and a map of pCF2/CAT is shown in panel B.
  • pCFI contains the enhancer/promoter region from the immediate early gene of cytomegalovirus (CMV) .
  • CMV cytomegalovirus
  • a hybrid intron is located between the promoter and the transgene cDNA.
  • the polyadenylation signal of the bovine growth hormone gene was selected for placement downstream from the transgene.
  • the vector also contains a drug-resistance marker that encodes the aminoglycosidase 3'-phosphotransferase gene (derived from the transposon Tn903, A. Oka et al., Journal of Molecular Biology , 147, 217-226, 1981) thereby conferring resistance to kanamycin.
  • Further details of pCF 1 structure are provided directly below, including description of placement therein of a cDNA sequence encoding for cystic fibrosis transmembrane conductance regulator (CFTR) protein.
  • CFTR cystic fibrosis transmembrane conductance regulator
  • the pCFI vector is based on the commercially available vector pCMV ⁇ (Clontech).
  • the pCMV ⁇ construct has a pUC19 backbone (J. Vieira, et al., Gene , 19, 259-268, 1982) that includes a procaryotic origin of replication derived originally from pBR322.
  • pCFI -plasmid (as constructed to include a nucleotide sequence coding for CFTR) are as follows. Proceeding clockwise — the human cytomegalovirus immediate early gene promoter and enhancer, a fused tripartite leader from adenovirus and a hybrid intron, a linker sequence, the CFTR cDNA, an additional linker sequence, the bovine growth hormone polyadenylation signal, pUC origin of replication and backbone, and the kanamycin resistance gene. The pCFI -CFTR plasmid has been completely sequenced on both strands.
  • the human cytomegalovirus immediate early gene promoter and enhancer spans the region from nucleotides 1 -639. This corresponds to the region from -522 to +72 relative to the transcriptional start site (+1) and includes almost the entire enhancer region from -524 to -1 18 as originally defined by Boshart et al., Cell, 41 , 521-530 (1985).
  • the CAAT box is located at nucleotides 486-490 and the TATA box is at nucleotides 521-525 in pCFl- CFTR.
  • the CFTR transcript is predicted to initiate at nucleotide 548, which is the transcriptional start site of the CMV promoter.
  • the hybrid intron is composed of a fused tri-partite leader from adenovirus containing a 5' splice donor signal, and a 3' splice acceptor signal derived from an IgG gene.
  • the elements in the intron are as follows: the first leader (nucleotides 705-745), the second leader (nucleotides 746-816), the third leader (partial, nucleotides 817-877), the splice donor sequence and intron region from the first leader (nucleotides 878-1042), and the mouse immunoglobulin gene splice donor sequence (nucleotides 1043-1 138).
  • the donor site (G
  • the CFTR coding region comprises nucleotides 1183-5622.
  • the 3' untranslated region of the predicted CFTR transcript comprises 51 nucleotides of the 3' untranslated region of the CFTR cDNA, 21 nucleotides of linker sequence and 114 nucleotides of the BGH poly A signal.
  • the BGH poly A signal contains 90 nucleotides of flanking sequence 5' to the conserved AAUAAA and 129 nucleotides of flanking sequence 3' to the AAUAAA motif.
  • the primary CFTR transcript is predicted to be cleaved downstream of the BGH polyadenylation signal at nucleotide 5808.
  • pCF2 plasmid Figure 18 (B) contains a second CMV enhancer, in tandem with the first.
  • Enhanced expression of transgenes from pCFI or pCF2 results from the combination of a strong promoter, the presence of a highly efficient polyadenylation signal, a leader sequence that enhances translation, and an intron to increase message stability.
  • Example 5 Correction of Chloride Ion Transport Defect in Nasal Polyp Epithelial Cells of a Cystic Fibrosis Patient by Cationic Amphiphile-Mediated Gene Transfer
  • amphiphile spermidine cholesterol carbamate
  • pCMV-CFTR plasmid vector a construct encoding wild type human cystic fibrosis transmembrane conductance regulator protein, see above. Concentrations in the final mixture were 42 ⁇ molar of spermidine cholesterol carbamate(and also of DOPE) and 60 ⁇ molar (based on molarity in nucleotides) of the plasmid expression vector.
  • the composition of the submucosal solution was similar to the mucosal solution with the exception that sodium gluconate replaced sodium chloride. Transepithelial voltage was clamped to 0 mV and short circuit current was recorded. Amiloride (10 ⁇ M) was applied into the apical bath, followed by the mucosal addition of forskolin and IBMX (at 100 ⁇ M each). 5-nitro-2-(3- phenylpropylamino) benzoic acid (“NPPB”) , an inhibitor of CFTR chloride channels, was then added to the mucosal solution at 10 to 30 ⁇ M.
  • NPPB 5-nitro-2-(3- phenylpropylamino) benzoic acid
  • SI Chloride secretion i.e. movement of chloride from the epithelial cells to the mucosal solution
  • a cAMP-stimulated current (0.5 to 2.5 ⁇ ampere/cm * -) was observed in monolayers transfected with wild type CFTR gene. Current was not detected with the pCMV - ⁇ -galactosidase control.
  • a recommended procedure for formulating and using the pharmaceutical compositions of the invention to treat cystic fibrosis in human patients is as follows.
  • spermine cholesterol carbamate amphiphile No. 67
  • DOPE DOPE
  • amphiphile-containing film is rehydated in water-for -injection with gentle vortexing to a resultant amphiphile concentration of about 3mM.
  • amphiphile/DNA complex that may be stably delivered by aerosol as a homogeneous phase (for example, using a Puritan Bennett Raindrop nebulizer from Lenexa Medical Division,
  • amphiphile-containing film it may be advantageous to prepare the amphiphile-containing film to include also one or more further ingredients that act to stablize the final amphiphile/DNA composition. Accordingly, it is presently preferred to prepare the amphiphile-containing film as a 1 : 2 : 0.05 molar mixture of amphiphile No. 67, DOPE, and PEG( 5 QOO)-DMPE.
  • PEG-DMPE polyethylene glycol 5000 - dimyristoylphoshatidyl ethanolamine, is Catalog No. 880210 from Avanti
  • DMPE DMPE was found to be less effective in the practice of the invention.
  • pCFl-CFTR plasmid (containing an encoding sequence for human cystic fibrosis transmembrane conductance regulator, see Example 4) is provided in water-for-injection at a concentration, measured as nucleotide, of 4 mM. Complexing of the plasmid and amphiphile is then allowed to proceed by gentle contacting of the two solutions for a period of 10 minutes.
  • aerosolized DNA it is presently preferred to deliver aerosolized DNA to the lung at a concentration thereof of between about 2 and about 12 mM (as nucleotide).
  • a sample of about 10 to about 40 ml is generally sufficient for one aerosol administration to the lung of an adult patient who is homozygous for the ⁇ F508 mutation in the CFTR-encoding gene.
  • cationic amphiphiles of the present invention are substantially more effective — in vivo — than other presently available amphiphiles, and thus may be used at substantially lower concentrations than known cationic amphiphiles. There results the opportunity to substantially minimize side effects (such as amphiphile toxicity, inflammatory response) that would otherwise affect adversely the success of the gene therapy.
  • side effects such as amphiphile toxicity, inflammatory response
  • amphiphiles of the invention $3 use of many of the amphiphiles of the invention should again be mentioned. Many of the amphiphiles of the invention were designed so that the metabolism thereof would rapidly proceed toward relatively harmless biologically-compatible components. In this regard, highly active amphiphiles 53, 67, and 75 are of particular note.
  • plasmids for gene therapy also be able to replicate in the cells of patients, since continued presence of the plasmid will provide correction of the genetic defect (in the case of cystic fibrosis, lack of functioning CFTR protein in the cell membrane of lung epithelial cells or other cells) over an extended period of time.
  • plasmids representative of the current art that is, those that cannot replicate in the targeted cells of a patient
  • plasmids gene therapy vectors
  • ⁇ sf separately in the nucleus of a target cell, and that is also able to replicate there (i.e. an episome).
  • Plasmids provided according to this aspect of the invention can be constructed as follows. It has been determined (C. McWhinney et al., Nucleic Acids Research, 18, 1233-1242, 1990) that the 2.4 kb Hindlll-Xhol fragment that is present immediately 5' to exon 1 of the human c-myc gene contains an origin of replication. The fragment was then cloned into a plasmid that if transfected into HeLa cells was shown to persist therein for more than 300 generations under drug selection. Replication was shown to be semiconservative (C. McWhinney et al.). Although approximately 5% of the plasmid population was lost per cell generation without drug selection in those experiments, this result nonetheless demonstrates substantial stabilization would be of benefit with respect to the design of therapeutic plasmids for gene therapy.
  • a variant of pCFl-CFTR (or pCFl-CAT) can be constructed in which a copy of the 2.4 kb Hindlll-Xhol fragment is placed just 5' to the CMV enhancer/promoter region of the pCFI backbone.
  • pCFl-CFTR or pCFl-CAT
  • a copy of the 2.4 kb Hindlll-Xhol fragment is placed just 5' to the CMV enhancer/promoter region of the pCFI backbone.
  • between 2 and about 4 - in tandem - copies of the 2.4 kb fragment may be similarly positioned.
  • the increase in plasmid size that results from insertion of the 2.4 kb fragment (or multiple copies thereof) is predicted to provide an additional benefit, that is, to facilitate plasmid unwinding, thus facilitating the activity of DNA polymerase.
  • origin of replication allows the resultant plasmid to replicate efficiently in human cells.
  • Other DNA sequences containing other origins of replication may also be used (for example, as found in the human ⁇ -globin gene, or the mouse DHFR gene.
  • a plasmid that can be constructed according to this aspect of the invention and containing the cytomegalovirus promoter and enhancer, an intron, the CFTR cDNA, the bovine growth hormone polyadenylation signal, the kanamycin resistance transposon Tn903, and 4 copies of the 2.4 kb 5' flanking region of the human c-myc gene is shown in Figure 20.
  • Example 8-Further Enhancements in Plasmid Design for Gene Therapy Use of Cytokine Promoters to Modulate Expression of Transgenes in Gene Therapy
  • Chronic inflammation is associated with numerous of the disease states that can be treated by gene therapy.
  • Representative of such disease states are cystic fibrosis (using CFTR), bronchitis, adult respiratory distress syndrome (using alpha- 1 antitrypsin), and metastatic cancers (through upregulation of p53, TIMP-1 , and TIMP-2).
  • Inflammatory conditions typically involve many interrelated processes (for example, involvement by many types of immune system cells and liver proteins), whereby the body attempts to heal a damaged or infected tissue.
  • chronic inflammation which persists as a result of an unresolved condition may lead to permanent tissue damage, as is the case with respect to lung tissue affected by cystic fibrosis and associated and unresolved lung infections.
  • permanent damage to the lung tissue of cystic fibrosis patients is a leading cause of their mortality. It would be desirable to provide gene therapy in such a manner as to treat inflammatory conditions associated with the targeted disease state.
  • a further aspect of the present invention involves construction of gene therapy vectors in which the therapeutic transgene is placed under control of an RNA polymerase promoter from a cytokine gene (or a gene that encodes another similar regulatory protein) such as, for example, the promoter for any of interleukin 2, interleukin 8, interleukin 1, interleukin 11, interleukin 6, endothelin -1, monocyte chemoattractant protein -1 , IL-lra (receptor agonist), or for GM-CSF.
  • a cytokine gene or a gene that encodes another similar regulatory protein
  • the promoter for any of interleukin 2, interleukin 8, interleukin 1, interleukin 11, interleukin 6, endothelin -1, monocyte chemoattractant protein -1 , IL-lra (receptor agonist), or for GM-CSF RNA polymerase promoter from a cytokine gene (or a gene that encodes another similar
  • Cytokines may be defined as hormone-like intercellular signal proteins that are involved in regulation of cell proliferation, differentiation, and function, such as concerning haematopoiesis and lymphopoiesis.
  • the interleukins are a particular group of cytokines having promoters that are useful in the practice of the invention.
  • the interleukins are proteins, typically of unrelated origin, which act as intercellular signals mediating reactions between immunoreactive cells. However, it is understood that many "interleukins" have effects upon additional cell types including endothelial cells, epithelial cells, and fibroblasts.
  • gene therapy vectors can be designed wherein the level of therapeutic transgene expressed therefrom is determined, in part, by the level of inflammation present. There follows hereafter description of how such vectors are designed using primarily properties of the interleukin 8 gene as an example.
  • TNF tumor necrosis factor
  • transcription factors such as NF-kB, AP-1, NF-IL6 and octamer binding protein
  • interleukin 8 a polypeptide of 8,500 MW, is upregulated by inflammation and acts as a potent chemoattractant for T lymphocytes and neutrophil cells that are themselves involved in the inflammation response.
  • the interleukin 8 gene is regulated primarily at the transcriptional level, and it has also been determined (H. Nakamura et al., Journal of Biological Chemistry , 266, 19611-19617, 1991 ) that TNF can increase interleukin 8 transcription by more than 30 -fold in vitro in bronchial epithelial cells. Accordingly, there follows description of gene therapy vectors which take advantage of the above.
  • a plasmid can be constructed that is substantially similar to pCFI, that is, derived from a pUC plasmid containing a bacterial-derived origin of replication and a gene conferring resistance to kanamycin.
  • the resultant plasmid contains also, in sequence, a CMV enhancer, a promoter, a hybrid intron, a cDNA sequence encoding CFTR, and the bovine growth hormone polyadenylation signal.
  • RNA polymerase promoter there is selected the - 335 to +54 region of the interleukin 8 promoter. This region gave the highest ratio in terms of promoter activity plus TNF over minus TNF (Nakamura, 1991)
  • Such a plasmid has particularly valuable performance attributes. As inflammation increases in a cystic fibrosis-affected lung (and therefore the need to treat the lung with gene therapy also increases), the concentration of various inflammation-related molecules (such as TNF) will increase.
  • a transcriptional promoter that of interleukin 8, for example
  • the promoter will function as a natural gene switch such that the amount of beneficial CFTR transcription will be tailored to the amount of inflammation.
  • RNA polymerase promoter sequences derived from the other aforementioned genes are also useful in the practice of the invention.
  • the reporter plasmid pCF-1 CAT (Example 4) was used and was purified to minimize endotoxin ( ⁇ 1 EU/mg pDNA), and also chromosomal DNA contamination ( ⁇ 2%).
  • Amphiphile No. 53 (1 : 1 with DOPE) / DNA complex was prepared according to the procedures of Example 3. The amphiphile was provided as the free base, the plasmid was prepared as a sodium salt in water, and the DOPE was provided in zwitterionic form.
  • the animal model was the BALB/c mouse. Females 6-8 weeks old weighing 16-18 g were injected intravenously using the tail vein, using 5 animals per group. The volume of lipid:pDNA complex used was 100 ⁇ l in all experiments. Unless noted otherwise, mice were sacrificed 48 h following adminstration of the complex. Organs were frozen immediately on dry ice to store for subsequent analysis.
  • CAT chloramphenicol acetyl transferase
  • Zeta potentials of the samples can be measured (using typically 5 measurements per sample) employing a Malvern Zetasizer 4 (Malvern
  • Dried lipid films containing the cationic lipid and DOPE are hydrated in distilled water (dI I 2 O).
  • DNA typically should be diluted to a concentration of about 300 ⁇ M in dH 2 O.
  • the DNA solution (1.5 mL) can then be added to an equal volume of cationic lipid vesicles and incubated at room temperature for 10 min. Enough NaCl (for example, 4 mM stock) may be added to result in a final concentration of 1 mM NaCl. If necessary, the sample can be diluted further with 1 mM NaCl (to maintain a photomultiplier signal below 4000 counts per second), and distilled water can be used in place of the NaCl solutions.
  • amphiphiles No. 53 and No. 67 are among those preferred for use in intravenous targeting of the heart, as are many other amphiphiles selected from Groups I and II.
  • the mixture was cooled to 0-2 °C and kept under a nitrogen atmosphere.
  • a solution of spermine (lOg, 49 mmol) in methylene chloride (250 mL) was added gradually over 15 minutes, maintaining a reaction temperature of 0-2 °C.
  • the reaction mixture was stirred overnight at ambient temperature and then concentrated in vacuo.
  • To the resulting material was added IM hydrochloric acid (67 mL) and methanol (400 mL). The solution was cooled overnight at 4 °C yielding a white precipitate. The precipitate was isolated by vacuum filtration using Whatman #1 filter paper.
  • N ⁇ N ⁇ -diCbz-spermine di HC1 salt (13.38g, 24.7 mmol) was dissolved in a chloroform, methanol and water mixture in the ratio 65:25:4 (940 mL). The solution was stirred at room temperature and cholesteryl chloroformate (1 lg, 24.5 mmol) was added. The solution was stirred at ambient temperature for 1.5 hours and then diluted with IM sodium hydroxide solution (165 mL). The organic and aqueous layers were separated and the organic layer containing the product was washed with water (1 10 mL). The organic fraction was dried over sodium sulfate, concentrated in vacuo and vacuum dried.
  • the crude oil was purified by chromatography using silica gel c ⁇ (60A, 1 Kg) .
  • the silica was packed in 10% MeOH / CI1C1 3 and the column was eluted with 25% MeOH / CHC1 3 .
  • Fractions of 900 mL were collected and analyzed by thin layer chromatography.
  • the resulting oil was dried under vacuum for 17 hours to give 8.5g (9.67 mmol, 39% yield) of product.
  • N ⁇ ,N ⁇ 2 -diCbz-N 4 -spermine cholesteryl carbamate (8.5g, 9.67 mmol) was dissolved in 200 mL of acetic acid and 1.66 g of 10% Pd on carbon was added. The solution was purged with nitrogen and stirred under hydrogen at atmospheric pressure. The hydrogen was supplied to the reaction flask using a balloon filled with hydrogen gas. The hydrogenolysis was allowed to proceed for 3 hours. The reaction mixture was filtered through Whatman #1 filter paper and the catalyst was washed with 250 mL of 10% acetic acid in ethyl acetate. The filtrate was concentrated in vacuo to give a residue, coevaporation with chloroform aids removal of the acetic acid.
  • N-t-BOC-glycine-N-hydroxysuccinimide ester (0.5 g, 1.83 mmol) was added to a solution of diCbz-spermine'2HCl (1.0 g, 1.94 mmol) and N,N- diisopropylethylamine (0.3 mL, 1.72 mmol) in 65/ 25/ 4 chloroform/ methanol/ water (50 mL). The solution was stirred overnight at room temperature 3 Analysis of the reaction by TLC (20% methanol/ chloroform) indicated the presence of a new spot. The reaction was washed first with IM NaOH (10 mL) then with H O (10 mL).
  • N 1 ,N 12 -diCbz-N 4 -(N'-t-BOC-glycineamide)-spermine (220 mg, 0.354 mmol) and triethylamine (4 drops) in methylene chloride (20 mL). The reaction was stirred overnight at room temperature. Analysis of the reaction by TLC (20% methanol/ chloroform) indicated the presence of a new, higher running spot.
  • Cholesteryl chloroformate (148 mg, 0.33 mmol) was added to a solution of N N 9 ,N ⁇ 2 -triCbz-N 4 -glycineamide-spermine (219 mg, 0.33 mmol) and triethylamine (0.3 mL, 2.15 mmol) in methylene chloride (30 mL).
  • the reaction was stirred at room temperature for 3 hours.
  • the reaction was washed with H 2 O (10 mL).
  • the organic layer was separated, dried over sodium sulfate, filtered, and reduced in vacuo .
  • the crude material was purified by flash column chromatography (30 g silica gel) eluting with 65% ethyl acetate/ hexanes.
  • the desired product was isolated and characterized by
  • N ,N ⁇ ,N ⁇ 2 -tri-Cbz-N 4 -(N'-cholesteryl carbamate glycineamide)- spermine (221 mg, 0.2 mmol) was stirred with 10% Pd/C (50 mg) in glacial acetic acid (10 mL) under a hydrogen atmosphere for 2.5 hours. Analysis of the reaction by TLC (65% ethyl acetate/ hexanes) indicated the complete disappearance of the starting material. The flask was purged with nitrogen and the catalyst was removed by vacuum filtration through filter paper rinsing with 10% acetic acid/ ethyl acetate (20 mL).
  • 2,3 Dimyristoylglycerol (600 mg, 1.4 mmol) was dissolved in pyridine and the solution cooled to 0°C. The solution was stirred under a nitrogen atmosphere and p-toluenesulfonyl chloride (300 mg, 1.57 mmol) was added. The solution was allowed to warm to room temperature and was then stirred overnight at ambient temperature. To the solution was added hydrochloric acid (2.5M, 20 mL) and the solution was extracted three times with methylene chloride (25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to give a crude oil.
  • p-toluenesulfonyl chloride 300 mg, 1.57 mmol
  • the oil was purified by flash chromatography (50g of silica gel, 60A) eluting with 5% ethyl acetate / hexane.
  • the oil obtained by flash chromatography was dried under high vacuum at ambient temperature to give 2,3-Dimyristoylglycerol- tosylate(630 mg, 77% yield).
  • the crude material was purified by flash chromatography (30g silica gel, 60A) eluting with 5% methanol / chloroform. The product containing fractions were concentrated in vacuo. The material was purified by a second flash chromatography column (20 g silica, 6 ⁇ A) eluting with 50% ethyl acetate / hexane. Chromatography gave, after drying the product under high vacuum at ambient temperature, N 4 -(N ] ,N -diCbz- spermidine-2,3-dilauryloxypropylamine, as an oil (142 mg, 35% yield).
  • N - N *,N 8 -diCbz-spermidine-2,3-dilauryloxypropylamine (142 mg, 0.18 mmol) in glacial acetic acid (5 L) was stirred with 10% Pd C (50 mg) under a hydrogen atmosphere, for 2 hours.
  • the catalyst was removed by vacuum filtration through Whatman #1 filter paper. The catalyst was washed with ethyl / acetate hexane (10%, 10 mL). The filtrate was concentrated in vacuo and dried for 2 hours under high vacuum. To the residue was added sodium hydroxide solution (1 M, 8 mL) and the solution was extracted three times with methanol / chloroform (10%, 20 mL).
  • N- ⁇ N 12 -diCbz-spermine (0.87g, 1.85 mmol) and 2,3- dimyristoylglycerol-tosylate (280mg, 0.48 mmol) were dissolved in toluene (25 mL) and heated at reflux temperature (110°C) for 3 days.
  • the solution was concentrated in vacuo and the resulting material was purified by flash chromatography (30g silica gel, 6 ⁇ A) eluting with 10% methanol /chloroform.
  • the material isolated was dissolved in methanol / chloroform (10%, 85 mL) and washed twice with sodium hydroxide solution (1 M, 15 mL) and water (10 mL).
  • N 4 -(N ,N* 2 -diCbz-spermine)-2,3-dilauryloxypropylmine (180 mg, 0.2 mmol) in glacial acetic acid (10 mL) was stirred with 10% Pd/C (50 mg) under a hydrogen atmosphere, for 3 hours.
  • the catalyst was removed by vacuum filtration through Whatman #1 filter paper. The catalyst was washed with ethyl / acetate hexane (10%, 30 mL). The filtrate was concentrated in vacuo and dried for 2 hours under high vacuum.
  • Example 1 1 - CAT Assay of N '-spermine Cholestryl Carbamate (No. 37) N *1 - spermine cholesteryl carbamate (see above, amphiphile No. 37) was evaluated in the in vivo CAT assay following generally the procedure of Example 3. Preparation of stock solutions of the N 1 - spermine cholesteryl carbamate, and the neutral co-lipid DOPE (dioleoyl [18:1] phosphatidyl- ethanolamine) was as described in Example 1 , except that for certain preparations (see below) the amphiphile was provided(from chloroform) as a fully protonated hydrochloride salt.
  • DOPE dioleoyl [18:1] phosphatidyl- ethanolamine
  • amphiphile was tested at a 1 :1 or 1 :2 molar ratio to DOPE, at the final concentrations of 3.6 mM reporter plasmid DNA (as nucleotide), 0.6 mM cationic amphiphile, and either 0.6 or 1.2 mM of DOPE.

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Abstract

Novel cationic amphiphiles are provided that facilitate transport of biologically active (therapeutic) molecules into cells. By this invention, such cationic amphiphile is used in a state in which it is capable of accepting additional protons, i.e., it is not fully protonated. For purposes of this invention, cationic amphiphiles may be considered to encompass four general categories: (A) T-shaped/steroid-based amphiphiles; (B) T-shaped/non steroid-based amphiphils; (C) non T-shaped/steroid based amphiphiles and (D) non T-shaped/non steroid-based amphiphiles.

Description

Cationic Amphiphile Compositions for Intracellular Delivery of Therapeutic Molecules
This application is a continuation-in-part of the U.S. application No. 08/546,1 10 filed October 20, 1995 and entitled "Cationic Amphiphiles Containing Dialkylamine Lipophilic Groups for Intracellular Delivery of Therapeutic Molecules", itself a continuation-in-part of U.S. application No. 08/540,867 filed October 11, 1995 and entitled "Cationic Amphiphiles Containing Steroid Lipophilic Groups for Intracellular Delivery of Therapeutic Molecules", itself a continuation-in-part of U.S. application No. 08/352,479 entitled "Cationic Amphiphiles for Intracellular Delivery of Therapeutic Molecules", as filed on December 9, 1994. This application also claims the priority of (1) United States provisional patent application identified as Express Mail Label TB798223107 US, filed September 26, 1995 and entitled "Molecular Model of Cationic Lipid/DNA Complexes", and (2) United States provisional patent application identified as Express Mail Label EFl 09437051 US filed on September 27, 1995 and entitled "Intravenous Delivery of Therapeutic Compositions for Gene Therapy" . The complete text, claims and drawings of all of the above applications are incorporated herein by reference in their entirety.
Background of the Invention
The present invention relates to novel cationic amphiphilic compounds that facilitate the intracellular delivery of biologically active (therapeutic) molecules. The present invention relates also to pharmaceutical compositions that comprise such cationic amphiphiles, and that are useful to deliver into the cells of patients therapeutically effective amounts of biologically active molecules. The novel cationic amphiphilic compounds of the invention are particularly useful in relation to gene therapy.
Effective therapeutic use of many types of biologically active molecules has not been achieved simply because methods are not available to cause delivery of therapeutically effective amounts of such substances into the particular cells of a patient for which treatment therewith would provide therapeutic benefit. Efficient delivery of therapeutically sufficient amounts of such molecules into cells has often proved difficult, if not impossible, since, for example, the cell membrane presents a selectively-permeable barrier. Additionally, even when biologically active molecules successfully enter targeted cells, they may be degraded directly in the cell cytoplasm or even transported to structures in the the cell, such as lysosomal compartments, specialized for degradative processes. Thus both the nature of substances that are allowed to enter cells, and the amounts thereof that ultimately arrive at targeted locations within cells, at which they can provide therapeutic benefit, are strictly limited.
Although such selectivity is generally necessary in order that proper cell function can be maintained, it comes with the disadvantage that many therapeutically valuable substances (or therapeutically effective amounts thereof) are excluded. Additionally, the complex structure, behavior, and environment presented by an intact tissue that is targeted for intracellular delivery of biologically active molecules often interfere substantially with such delivery, in comparison with the case presented by populations of cells cultured in vitro .
Examples of biologically active molecules for which effective targeting to a patients' tissues is often not achieved: (1) numerous proteins including immunoglobin proteins, (2) polynucleotides such as genomic DNA, cDNA, or mR A (3) antisense polynucleotides; and (4) many low molecular weight compounds, whether synthetic or naturally occurring, such as the peptide hormones and antibiotics.
One of the fundamental challenges now facing medical practicioners is that although the defective genes that are associated with numerous inherited diseases (or that represent disease risk factors including for various cancers) have been isolated and characterized, methods to correct the disease states themselves by providing patients with normal copies of such genes (the technique of gene therapy) are substantially lacking. Accordingly, the development of improved methods of intracellular delivery therefor is of great medical importance. Examples of diseases that it is hoped can be treated by gene therapy include inherited disorders such as cystic fibrosis, Gaucher's disease, Fabry's disease, and muscular dystrophy. Representative of acquired disorders that can be treated are: (1) for cancers — multiple myeloma, leukemias, melanomas, ovarian carcinoma and small cell lung cancer; (2) for cardiovascular conditions — progressive heart failure, rcstenosis, and hemophilias; and (3) for neurological conditions — traumatic brain injury.
Gene therapy requires successful transfection of target cells in a patient. Transfection may generally be defined as the process of introducing an expressible polynucleotide (for example a gene, a cDNA, or an mRNA patterned thereon) into a cell. Successful expression of the encoding polynucleotide leads to production in the cells of a normal protein and leads to correction of the disease state associated with the abnormal gene. Therapies based on providing such proteins directly to target cells (protein replacement therapy) are often ineffective for the reasons mentioned above.
Cystic fibrosis, a common lethal genetic disorder, is a particular example of a disease that is a target for gene therapy. The disease is caused by the presence of one or more mutations in the gene that encodes a protein known as cystic fibrosis transmembrane conductance regulator ("CFTR"), and which regulates the movement of ions (and therefore fluid) across the cell membrane of epithelial cells, including lung epithelial cells. Abnormnal ion transport in airway cells leads to abnormal mucous secretion, inflammmation and infection, tisssue damage, and eventually death.
It is widely hoped that gene therapy will provide a long lasting and predictable form of therapy for certain disease states, and it is likely the only form of therapy suitable for many inhereted diseases. There remains however a critical need to develop compounds that faciliate entry of functional genes into cells, and whose activity in this regard is sufficient to provide for in vivo delivery of genes or other such biologically active therapeutic molecules in concentrations thereof that are sufficient for intracellular therapeutic effect. Reported Developments
In as much as compounds designed to facilitate intracellular delivery of biologically active molecules must interact with both non-polar and polar environments ( in or on, for example, the plasma membrane, tissue fluids, compartments within the cell, and the biologically active molecule itself ), such compounds are designed typically to contain both polar and non-polar domains. Compounds having both such domains may be termed amphiphiles, and many lipids and synthetic lipids that have been disclosed for use in facilitating such intracellular delivery (whether for in vitro or in vivo application) meet this definition. One particularly important class of such amphiphiles is the cationic amphiphiles. In general, cationic amphiphiles have polar groups that are capable of being positively charged at or around physiological pH, and this property, is understood in the art to be important in defining how the amphiphiles interact with the many types of biologically active (therapeutic) molecules including, for example, negatively charged polynucleotides such as DNA. It is also art-preferred to expose such amphiphiles to a source of protons, thereby increasing their positive charge, prior to contacting therapeutic molecules.
Examples of cationic amphiphilic compounds that have both polar and non-polar domains and that are stated to be useful in relation to intracellular delivery of biologically active molecules are found, for example, in the following references, which contain also useful discussion of (1) the properties of such compounds that are understood in the art as making them suitable for such applications, and (2) the nature of structures, as understood in the art, that are formed by complexing of such amphiphiles with therapeutic molecules intended for intracellular delivery. (1) Feigner, et al., Proc. Natl. Acad. Sci. USA, 84, 7413-7417 (1987) disclose use of positively -charged synthetic cationic lipids including N-[l(2,3- dioleyloxy)propyl]-N,N,N-trimethylammonium chloride ("DOTMA"), to form lipid/DNA complexes suitable for transfections. See also Feigner et al., The Journal of Biological Chemistry, 269(4), 2550-2561 (1994). (2) Behr et al, Proc. Natl. Acad. Sci. JSA, 86, 6982-6986 (1989) disclose numerous amphiphiles including dioctadecylamidologlycylspermine ("DOGS").
(3) U.S. Patent 5, 283,185 to Epand et al. describes additional classes and species of amphiphiles including 3B [N-(N' ,N' - dimethylaminoethane)-carbamoyl] cholesterol, termed "DC-chol".
(4) Additional compounds that facilitate transport of biologically active molecules into cells are disclosed in U.S. Patent No. 5,264,618 to Feigner et al. See also Feigner et al.. The Journal Of Biological Chemistry, 269(4), pp. 2550- 2561 (1994) for disclosure therein of further compounds including "DMRIE" 1 ,2- dimyristyloxypropyl-3-dimethyl-hydroxyethyl ammonium bromide, which is discussed below.
(5) Reference to amphiphiles suitable for intracellular delivery of biologically active molecules is also found in U.S. Patent No. 5,334,761 to Gebeyehu et al., and in Feigner et al., Methods(Methods in Enzymology), 5, 67- 75 (1993).
Although the compounds mentioned in the above-identified references have been demonstrated to facilitate (although in many such cases only in vitro ) the entry of biologically active molecules into cells, it is believed that the uptake efficiencies provided thereby are insufficient to support numerous therapeutic applications, particulary gene therapy. Additionally, since the above-identified compounds are understood to have only modest activity, substantial quantities thereof must be used leading to concerns about the toxicity of such compounds or of the metabolites thereof. Accordingly there is a need to develop improved cationic amphiphiles whose activity is so sufficient that successful therapies can be achieved therewith. Summary of the Invention
This invention provides for cationic amphiphiles that are particularly effective to facilitate transport of biologically active molecules into cells. Any cationic amphiphile useful for this purpose is contemplated herein. By this invention, such cationic amphiphile is used in a state in which it is capable of accepting additional protons, i.e., it is not fully protonated. For purposes of this invention, cationic amphiphiles may be considered to encompass four general categories: (A) T-shaped/ steroid-based molecules; (B) T-shaped/ non-steroid based molecules; (C) non T- shaped/steroid-based molecules and (D) non T-shaped/non-steroid based molecules.
As to Category "A", the T-shaped/ steroid-based amphiphiles, these are divided into two groups herein described, in representative examples, as: (I) having polar R groups contributed by alkylamine and polyalkylamine moieties ; and (II) having polar R groups contributed by alkylamine and polyalkylamine moieties, extended by amino acids and derivatized amino acids.
Accordingly, there are provided cationic amphiphiles of Category A, Group I (see Figure 1 , panels A , B, and C) capable of facilitating transport of biologically active molecules into cells, said amphiphiles having the structure (I),
Figure imgf000008_0001
wherein:
Z is a steroid;
X is a carbon atom or a nitrogen atom;
Y is a short linking group , or Y is absent; R-* is H, or a saturated or unsaturated aliphatic group;
R^ is — NH— , an alkylamine, or a polyalkylamine;
R^ is H, or a saturated or unsaturated aliphatic group;
R-*-" is --NH-- , an alkylamine, or a polyalkylamine; and wherein R* is the same or is different from R2 , except that both R* and R2 cannot be — NH--.
In one preferred embodiment, the steroid component "Z" is selected from the group consisting of 3-sterols, wherein said sterol molecule is linked by the 3-O- group thereof , or by N- in replacement thereof, to Y (or directly to X, if Y is absent ). According to this aspect of the invention, particularly effective amphiphiles include, for example, spermidine cholesterol carbamate ( N4 -spermidine cholesteryl carbamate, amphiphile No. 53), and spermine cholesterol carbamate ( N -spermine cholesteryl carbamate, amphiphile No. 67), and amphiphiles patterned thereon.
In a further preferred embodiment, the steroid group is linked to Y (or directly to X, if Y is absent) from ring position 17 of the steroid nucleus (see Figures 1 and 22), or from the arm that normally extends from position 17 in many steroids( see the structure of cholesterol in Figure 1), or from any shortened form of said arm.
In other preferred embodiments, within linking group Y are contained no more than about three or four atoms that themselves form a bridge of covalent bonds between X and Z. In a specific preferred embodiment of the invention, Y is a linking group wherein no more than one atom of said group forms a bond with both X and Z, or Y is absent.
Representative amphiphiles provided according to Group I include:
Figure imgf000010_0001
iST-spermidine cholesteryl carbamate
Figure imgf000010_0002
IsT-spermrne cholesteryl carbamate
Figure imgf000010_0003
(3-aminopropyl)- M4 - spermidine cholesteryl carbamate
Figure imgf000010_0004
N(Nr-3-aminopropylspermidine) cholesteryl carbamate
Additionally there are provided cationic amphiphiles of Category A, Group II (see Figure 5) capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (II),
3
Figure imgf000011_0001
wherein:
Z is a steroid;
X is a carbon atom or a nitrogen atom;
Y is a linking group or Y is absent;
R is an amino acid, a derivatized amino acid, H or alkyl;
R' is — NH- , an alkylamine, or a polyalkylamine;
R4 is an amino acid, a derivatized amino acid, H or alkyl;
R2 is --NH-- , an alkylamine, or a polyalkylamine; and wherein R- is the same or is different from R2 , except that both R-- and
R2 cannot be -NH~.
Representative amphiphiles provided according to Group II include:
Figure imgf000012_0001
No. 91
Figure imgf000012_0002
N -spermi ine c o estery car amate
As to Category B, T-shaped/ non-steroid based amphiphiles, these are divided generally according to the practice of the invention into two groups, herein described, in representative examples, as: (III) wherein the lipophilic group is contributed by a mono or dialkylamine moiety and the polar groups are, typically, alkylamine or polyalkylamine; and (IV) wherein the lipophilic groups are contributed by saturated or unsaturated alkyl or acyl groups and the polar groups are, typically, alkylamine or polyalkylamine.
Accordingly, there are provided cationic amphiphiles of Category B, Group III (see Figure 6) capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (III),
\
Figure imgf000013_0001
wherein:
Z is an alkylamine or a dialkylamine, linked by the N-atom thereof, to Y ( or directly to X, if Y is absent ), wherein if Z is a dialkylamine, the alkyl groups thereof can be the same or different;
X is a carbon atom or a nitrogen atom;
Y is a short linking group , or Y is absent;
R-* is H, or a saturated or unsaturated aliphatic group;
R' is —NH— , an alkylamine, or a polyalkylamine;
R4 is II, or a saturated or unsaturated aliphatic group;
R2 is —Nil— , an alkylamine, or a polyalkylamine; and wherein R' is the same or is different from R2 , except that both R' and
R2 cannot be -NH--.
With respect to amphiphiles provided according to Structure (III), it is again preferred that within linking group Y there are contained no more than about three or four atoms that themselves form a bridge of covalent bonds between X and Z. In a specific preferred embodiment of the invention, Y is a linking group, such as > C=O, wherein no more than one atom of said group forms a bond with both X and Z, or Y is absent.
Representative amphiphiles provided according to Group III include: .
If
Figure imgf000014_0001
No. 43
N,N-dioctadecyllysineamide diHCl salt
Figure imgf000014_0002
No. 47
N1,N1-dioctadecyl-l,2,6- triaminohexanc tri HC1 salt
Additional Group III amphiphiles are represented by those related to the well known amphiphile dioctadecylamidologlycylspermine "DOGS" (see Behr et al., Proc. Natl. Acad. Sci. ,USA, 86, 6982-6986, 1989) and DPPES (as described in Behr, J.P., Bioconjugatc Chemistry, 5, 1994, 382-389.
Additionally there are provided cationic amphiphiles of Category B, Group IV (see Figure 7) capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (IV),
Figure imgf000014_0003
(Rb) (IV)
wherein:
A and B are independently O, N or S;
R5 and R6 are independently alkyl or acyl groups and may be saturated or contain sites of unsaturation;
C is selected from the group consisting of --CH2-, >C=0, and >C=S; E is a carbon atom or a nitrogen atom;
D is a linking group such as -NH(C=O)- or -O(C=O)- , or D is absent;
R' is H, or a saturated or unsaturated aliphatic group;
R' is — NH-- , an alkylamine, or a polyalkylamine;
R4 is H, or a saturated or unsaturated aliphatic group;
R2 is — NH— , an alkylamine, or a polyalkylamine; and wherein R* is the same or is different from R2 , except that both R' and
R2 cannot be -NH--.
up IV include:
Figure imgf000015_0001
NH2 l-(N^spermirιe)-2,3-dilauryl- glycerol carbamate
Figure imgf000015_0002
NT-sperm ine-2,3-dilauryI- oxypropylamine
As aforementioned, the invention also provides for formulations of non T-shaped/steroid-based amphiphiles (Category C), and use thereof, such as
I?)
Figure imgf000016_0001
(N ' -spermidine cholesteryl carbamate),
Figure imgf000016_0002
Thermospermine cholesteryl carbamate), and
Figure imgf000016_0003
(N -Spermine cholesteryl carbamate).
Additional Category C amphiphiles that may be used according to the practice of the invention include, for example, those described in U.S. Patent 5, 283,185 to Epand et al. including 3B [N^N1 ,^ - dimethylaminoethane)- carbamoyl] cholesterol, termed "DC-chol".
The invention also provides for diverse formulations of non T- shaped/non steroid-based amphiphiles (Category D),and use thereof, such as cationic lipids patterned on N-[ l(2,3-dioleyloxy)propyl]-N,N,N- trimethylammonium chloride ("DOTMA"), but being non-quaternary variants thereof that can be further protonated (Feigner, et al. Proc. Natl. Acad. Sci. USA, 84, 7413-7417 (1987), and numerous additional categories discussed below including, for example, lipopolylysines, and cationic amphiphiles patterned upon l-[2- (acyloxy)ethyl]-2-alkyl (alkenyl)-3-(2-hydroxyethyl) imidazolium chloride.
The invention provides also for pharmaceutical compositions that comprise one or more cationic amphiphiles, and one or more biologically active molecules, wherein said compositions facilitate intracellular delivery in the tissues of patients of therapeutically effective amounts of the biologically active molecules. The pharmaceutical compositions of the invention may be formulated to contain one or more additional physiologically acceptable substances that stabilize the compositions for storage and/or contribute to the successful intracellular delivery of the biologically active molecules.
In a further aspect, the invention provides a method for facilitating the transfer of biologically active molecules into cells comprising the steps of: preparing a dispersion of a cationic amphiphile of the invention; contacting said dispersion with a biologically active molecule to form a complex between said amphiphile and said molecule, and contacting cells with said complex thereby facilitating transfer of said biologically-active molecule into the cells.
For pharmaceutical use, the cationic amphiphile(s) of the invention may be formulated with one or more additional cationic amphiphiles including those known in the art, or with neutral co-Iipids such as dioleoylphosphatidyl- ethanolamine, (" DOPE"), to facilitate delivery to cells of the biologically active molecules. Additionally, compositions that comprise one or more cationic amphiphiles of the invention can be used to introduce biologically active molecules into plant cells, such as plant cells in tissue culture.
Additionally, the present application provides for novel plasmids suitable for complexing with the amphiphiles of the invention in order to treat patients by gene therapy, so that a high level of expression of the appropriate therapeutic transgene can be achieved. Representative examples thereof include the plasmid pCMVHI and pCFI. pCFl plasmid contains the enhancer/promoter region from the immediate early gene of cytomegalovirus. The pla id also contains a hybrid intron located between the promoter and the transgene cDNA. The polyadenylation signal of the bovine growth hormone gene was selected for placement downstream from the transgene. These and other features contribute substantially to the improved transgene expression possible with this plasmid. Further enhancements in plasmid performance are made possible by the provision of replicating episomal plasmids. Additional therapeutic enhancements are made possible by providing plasmids in which expression of the therapeutic transgene is placed under the control of a transcriptional promoter that is sensitive to the concentration of inflammation-related substances in the target tissue. Such plasmids are of particular use for the treatment of clinical cases in which inflammation is a major complication.
In a still further embodiment of the invention, particular organs or tissues may be targeted for gene therapy, by intravenous administration of amphiphile/transgene complexes, by adjusting the ratio of amphiphile to DNA in such complexes, and by adjusting the apparent charge or zeta potential thereof.
Further additional and representative aspects of the invention are described according to the Detailed Description of the Invention which follows directly.
Id Brief Description of the Drawings
FIGURE 1 depicts representative Group I cationic amphophiles.
FIGURE 2 depicts representative steroid lipophilic groups.
FIGURE 3 depicts representative steroid lipophilic groups.
FIGURE 4 depicts a transacylation reaction.
FIGURE 5 depicts represenative Group II cationic amphiphiles.
FIGURE 6 depicts represenative Group III cationic amphiphiles.
FIGURE 7 depicts representative Group IV cationic amphiphiles.
FIGURE 8 provides a route of synthesis for spermidine cholesterol carbamate.
FIGURE 9 provides a route of synthesis for spermine cholesterol carbamate
FIGURE 10 provides a comparison of in vivo transfection efficiency for certain cationic amphiphiles under particular conditions.
ITGURE 11 is a depiction of in vivo transfection effeciency as a function of
DNA concentration for a particular cationic amphiphile.
FIGURE 12 is a depiction of in vivo transfection effeciency as a function of concentration of a particular cationic amphiphile.
ITGURE 13 provides relative transfection efficiencies for Group I amphiphiles.
FIGURE 14 provides relative transfection efficiencies for Group II amphiphiles.
FIGURE 15 provides relative transfection efficiencies for Group IV amphiphiles.
FIGURE 16 provides a map of pCMVHI-CAT plasmid.
FIGURE 17 shows the hybrid intron of pCMVHI-CAT.
FIGURE 18 (panel A) provides a map of pCFl/CAT plasmid.
FIGURE 18 (panel B) provides a map of pCF2/CAT plasmid.
FIGURE 19 shows a plot of corrected chloride ion transport in nasal polyp epithelial cells from a cystic fibrosis patient.
FIGURE 20 provides a map of pMyc4-CFTR plasmid. a FIGURE 21 demonstrates intravenous targeting of the heart and lung. FIGURE 22 demonstrates the improved in vivo performance of amphiphile No. 37 when provided in less than fully protonated form.
Detailed Description of the Invention Information Concerning the Structure of Cationic Amphiphiles of the Invention
This invention provides for cationic amphiphile compounds, and compositions containing them, that are useful to facilitate transport of biologically active molecules into cells. The amphiphiles are particularly useful in facilitating the transport of biologically active polynucleotides into cells, and in particular to the cells of patients for the purpose of gene therapy.
In connection with the practice of the present invention, it is noted that "cationic" means that the R groups, as defined herein, tend to have one or more positive charges in a solution that is at or near physiological pH. By this invention, cationic amphiphiles that are capable of accepting additional protons are described. Such cationic amphiphiles have one or more positive charges at pH 7, but have not been fully protonated ,as manipulated herein, and therefore have obtained less than their full cationic potential. Such cationic character may enhance interaction of the amphiphile with therapeutic molecules (such as nucleic acids which have a negative charge) or with cell structures (such as plasma membrane glycoproteins) thereby contributing to successful entry of the therapeutic molecules into cells, or processing within subcompartments (such as the nucleus) thereof. For example, it is observed that a positively charged molecule, such as a cationic amphiphile capable of accepting additional protons, may have the necessary positive charges to be able to transverse a cell membrane and also, given the lack of full protonation, may be able to disassociate from a biologically active molecule such as
H negatively charged nucleic acids. In this regard, the reader is referred to the numerous theories in the art concerning transfection-enhancing function of cationic amphiphiles, none of which is to be taken as limiting on the practice of the present invention.
Biological molecules for which transport into cells can be facilitated according to the practice of the invention include, for example, genomic DNA, cDNA, mRNA, antisense RNA or DNA, polypeptides and small molecular weight drugs or hormones. Representative examples thereof are mentioned below in connection with the description of therapeutic (pharmaceutical) compositions of the invention.
Cationic amphiphiles in Category A (T-shaped/steroid based) according to the practice of the invention possess several novel features. These features may be seen in comparison with, for example, cationic amphiphile structures such as those disclosed in U.S. Patent No. 5, 283,185 to Epand et al., a representative structure of which is is 3B [N-(N ,N - dimethylaminoethane)-carbamoyl] cholesterol, commonly known as "DC- chol", and to those disclosed by Behr et al. Proc. Natl. Acad. Sci., USA, 86, 6982- 6986 (1 89), a representative structure of which is dioctadecylamidolo- glycylspermine ("DOGS").
Cationic amphiphiles in Category A of the present invention contain distinctive structural features: (1) the presence of a lipophilic group which is connected directly, or through a linking group, to two cationic groups (see below) that themselves comprise amino, alkylamine or polyalkylamine groups, there resulting an overall and novel "T-shaped" structure; and (2) in many cases, and in comparison with numerous art-recognized amphiphiles, the use of a relatively short linking group to bring into close proximity the lipophilic and cationic regions of the amphiphile. Without being limited as to theory, it is believed that these features contribute substantially to the transfection- enhancing capability of these compounds. As an example of this, Figure 10 ή below demonstrates the very substantial in vivo transfection-enhancing capability of spermidine cholesterol carbamate (a novel amphiphile of the invention) in comparision to DC- chol and DMRIE — two well recognized transfectants.
In an imporant embodiment of the invention the biologically active molecule is an encoding polynucleotide that is expressed when placed in the cells of a patient leading to the correction of a metabolic defect. In a particularly important example, the polynucleotide encodes for a polypeptide having an amino acid sequence sufficiently duplicalive of that of human cystic fibrosis transmembrane regulator ("CFTR") to allow possession of the biological property of epithelial cell anion channel regulation.
As aforementioned, characteristic and novel features of the amphiphiles of the invention include first, that the linking group that connects the two cationic amine groups to the lipophilic group is very short, or absent entirely, and second, that the resultant linking of the the two cationic R groups to the lipophilic group forms a T-shaped structure when viewed from the position of atom "X" (a carbon or nitrogen atom) as depicted, for example, in Structures (I), (II), (III) and (IV, see atom "E").
As examples of the cationic amphiphiles of Category A of the invention, both spermidine cholesterol carbamate ( N4 -spermidine cholesteryl carbamate) and spermine cholesterol carbamate ( N4 -spermine cholesteryl carbamate) have been determined to be superior transfectants in vivo in comparison with non "T-shaped" amphiphiles having otherwise equivalent amounts of cationic alkylamine structure. Superior performance (see also Example 3) has thus been determined for:
o
Figure imgf000023_0001
( spermidine cholesterol carbamate ) in comparison with, for example,
Figure imgf000023_0002
(N -spermidine cholesteryl carbamate).
Additionally, superior performance has been determined for
Figure imgf000023_0003
H ( spermine cholesterol carbamate ) in comparison with, for example,
Figure imgf000023_0004
Thermospermine cholesteryl carbamate), and
(N 1 -Spermine
Figure imgf000023_0005
carbamate).
9L l Applicants have also noted that numerous of the T-shaped/steroid- based cationic amphiphiles of the invention have structural features in common with naturally occurring polyamines such as spermine and spermidine (including N-atom spacing). In this regard, the structures of Category "A" (T- shaped/steroid based) amphiphiles 53, 67, 78, 90, and 91 are representative. As can be seen by examination of the data in Figures 13, 14 and 15, the placement of the nitrogen atoms in the polar head groups of the amphiphiles such that they are separated by one or more combinations of 3 and 4 carbon atoms leads to high in vivo transfection efficiency for plasmid transgenes complexed therewith. Applicants have also noted that these in-common structural features may have a useful effect upon the binding of the amphiphiles to DNA, and on interaction with cell surface polyamine receptors. Interaction with cell polyamine receptors may be particularly important with respect to the treatment of cancer cells by gene therapy, since the DNA replication requirements of such cells may lead to high level expression of such receptors. In accordance with the present invention, however, it is observed that the performance of the non-Tshaped/steroid based cationic amphiphiles is significantly improved by use thereof in anot fully protonated form. Thus, by not providing a source of additional protons, improved transfection can be obtained. Category A/Group I Amphiphiles
In connection with the design of the Group I amphiphiles of the invention, the following considerations are of note. Many of these design features are then discussed in connection with the other amphiphiles of the invention, those classified under Groups II, II and IV.
Accordingly, there are provided cationic amphiphiles of Group I (see Figure 1, panels A , B, and C) capable of facilitating transport of biologically active molecules into cells, said amphiphiles having the structure (I),
A2-
Figure imgf000025_0001
wherein:
Z is a steroid;
X is a carbon atom or a nitrogen atom;
Y is a short linking group , or Y is absent;
R is H, or a saturated or unsaturated aliphatic group;
R is — NH— , an alkylamine, or a polyalkylamine;
R4 is H, or a saturated or unsaturated aliphatic group;
R2 is — NH— , an alkylamine, or a polyalkylamine; and wherein R- is the same or is different from R2 , except that both R' and
R- cannot be — NH— . The Linking Group
Preferably the linking group that connects the lipophilic group to the two cationic R groups is relatively short. It is preferred that within linking group Y are contained no more than about three or four atoms that themselves form a bridge of covalent bonds between X and Z. Examples of Y groups include — -(CH2)2- ; -(CH2)3- ; -(CH2)-(CO)- ; -(CH2)n-NH-(C=O)- where n is preferably 4 or less. Additional linking groups useful in the practice of the invention are those patterned on small amino acids such as glycinyl, alanyl, beta-alanyl, serinyl, and the like.
With respect to the above representations, the left hand side thereof-as depicted- is intended to bond to atom "X", and the right hand side thereof to group "Z"( see structure I).
3-3 In certain preferred embodiments of the invention, Y is a linking group wherein no more than one atom of this group forms a bond with both "X"and "Z". Examples of preferred linking groups include ~CH — , >C=S, and >C=0.
Alternatively, the linking group "Y"may be absent entirely.
As aforementioned (see Structure I, directly above), "X" forms a connecting point in the amphiphiles to which is also attached the two cationic R groups. As can be seen therein (see also Figure 1 ), the placement of the nitrogen atom that represents "X" clearly causes the molecule to assume a T- shape. Steroid Lipophilic Groups
Cationic amphiphiles according to the practice of the invention may include a variety of structures as lipophilic group. Steroids represent a preferred group of such structures.
With respect to the design and orientation of steroids as lipophilic groups according to the practice of the invention, the following considerations are of note. Steroids are widely distributed in the animal, microbial and plant kingdoms. They may be defined as solid alcohols that typically contain, as their basic skeleton, 17 carbon atoms arranged in the form of a perhydrocyclopenteno-phenanthrene ring system. Accordingly, such compounds include bile acids, cholesterol and related substances, vitamin D, certain insect molting hormones, certain sex hormones, corticoid hormones, certain antibiotics, and derivatives of all of the above wherein additional rings are added or are deleted from the basic structure, [see Natural Products Chemistry, K. Nakanashi et al. eds., Academic Press, Inc., New York (1974), volume 1, at Chapter 6 for a further discussion of the broad classes of molecules that are understood in the art to be steroids]. Additionally, for the purposes of the invention, the term steroid is used broadly to include related molecules derived from multiple isoprenoid units, such as vitamin E. Steroids
? representative of those useful in the practice of the invention are shown in Figures 1, 2, 3 and 5.
As elaborated below, certain preferred amphiphiles of the invention include a steroid component "Z" that is selected from the group consisting of 3-sterols, wherein said sterol molecule is linked by the 3-O- group thereof , or by N- in replacement thereof, to Y (see Figure I). Such structures include, for example, spermidine cholesterol carbamate, spermine cholesterol carbamate, spermidine 7-dehydrocholesteryl carbamate, lysine 3-N-dihydrocholesteryl carbamate, spermidine cholestamine urea, and N-3-aminopropyl-N-4- aminobutylcholestamine.
In a further preferred embodiment, the steroid group is linked to Y (or directly to X if Y is absent) from ring position 17 of the steroid nucleus (see Figures 1 and 3), or from the arm that normally extends from position 17 in many steroids (see Figures 1 and 3), or from any shortened form of said arm.
In connection with the selection of steroids for inclusion in the amphiphiles of the invention, it is preferred that the molecules have structures which can be metabolized by the body and are nontoxic at the doses thereof that are used. Preferred are steroids such as cholesterol and ergosterol that are substantially non toxic and which possess biologically normal stereospecificity in order to facilitate their safe metabolism in patients. Additional steroids useful in the practice of the invention include, for example, ergosterol Bl, ergosterol B2, ergosterol B3, androsterone, cholic acid, desoxycholic acid, chenodesoxycholic acid, lithocholic acid and, for example, various derivatives thereof as are shown in the panels of Figures 2 and 3.
With respect to the orientation of the steroid lipophilic group, that is, how the group is attached(with or without a linker) to the cationic (alkyl) amine groups of an amphiphile, the following further information is of note. Any ring position or substituent on the steroid can in general be used as point of attachment. It is preferred, however, to use a point of attachment that (1) as" mimimizes the complexity of chemical syntheses, and (2) is positioned near either "end" of the steroid molecule, for example , a position near ring position 3, or near ring position 17( or the arm that typically extends therefrom). Such positions provide an orientation of the steroid with respect to the rest of the amphiphile structure that faciliates bilayer formation, and/or micelle formation, and/or stabilizes interaction with the biologically active molecules to be carried into the target cells. Representative structures showing attachment of the cationic (alkyl) amine groups to the steroid lipophilic group through the arm extending from ring position 17 therof are shown in Figure 3 (panels A, B). With respect to this type of structure, it is further preferred that any polar groups on the steroid, such as may be attached to ring position 3, be either removed or capped (for example, hydroxy as methoxy) to avoid potentially destabilizing bilayer or micelle structures.
The representation in Figure 3 of cationic amphiphiles in which the steroid lipophilic group thereof is linked to the cationic alkylamine groups through steroid ring position 17 is but an example of the invention. Similarly, the representation in Figures 1 to 4 of cationic amphiphiles in which the steroid lipophilic group thereof is linked to the cationic alkylamine groups through steroid ring position 3 is an example of the invention. As aforementioned, use of any steroid ring position (or moiety or branch extending therefrom) as point of attachment is within the practice of the invention.
Preferred steroids for use as group "Z" according to the practice of the invention include: 3- sterols (derived from cholesterol)
&.(/
Figure imgf000029_0001
3-N steryl groups (patterned on cholesterol)
Figure imgf000029_0002
ergosterol and derivatives
Figure imgf000029_0003
Representative species of steroid that are patterened on ergosterol and that may be used to define the structure of cationic amphiphiles of the invention include: ergosterol (double bonds as shown); ergosterol Bl (Δ 8, 9; Δ 14, 15; Δ 22, 23); ergosterol Bl (Δ 6, 7; Δ 8, 14; Δ 22, 23); ergosterol Bl (Δ 7, 8; Δ 14, 15; Δ 22, 23); and lumisterol ( the 9b-H isomer of ergosterol).
cholic acid and derivatives
η
Figure imgf000030_0001
Representative species of steroid that are patterened on cholic acid and that may be used to define the structure of cationic amphiphiles of the invention include: cholic acid wherein r1 and r2 = OH; desoxycholic acid wherein r* = H and r2 =- OH; chenodesoxycholic acid wherein r- = OH and r2 - H; and lithocholic acid wherein r and r2 = II.
androsterone and derivatives thereof
Figure imgf000030_0002
Selection of Groups R1, R2, R3, and R4
For R3and R4:
According to the practice of the invention R3 and R4 are, independently, H, or saturated or unsaturated aliphatic groups. The aliphatic groups can be branched or unbranched. Representative groups include alkyl, alkenyl, and cycloalkyl. For R1 and R2:
R- and R2 represent structures recognized in the art as being amine; alkylamines (including primary, secondary, and tertiary amines), or extended versions thereof-herein termed "polyalkylamines". It is understood that both alkylamine and polyalkylamine groups as defined herein may include one or more carbon-carbon double bonds and the use of such alkenylamines is therefore within the practice of the invention.
Representative alkylamines include: (a) - NH-(CH )Z — where z is other than 0; (b) - f[CH3(CH2)y]N] -(CH2)Z - where z is other than 0; and
(c) - [[CH3(CH2)χ]fCH3(CH2)y]]N -(CH2)Z - where z is other than 0.
With respect to the circumstance where one or both of R* and R2 are tertiary amines, such as is represented in Structure (c) above, it is understood that a hydrogen atom corresponding to either R3 or R , as appropriate, may or may not be present since such hydrogen atoms correspond to the N:H(+) structure whose level of protonation will vary according to pH.
The term "polyalkylamine" as referred to herein defines a polymeric structure in which at least two alkylamines are joined. The alkylamine units that are so joined may be primary or secondary, and the polyalkylamines that result may contain primary, secondary, or tertiary N-atoms. The alkylamine
(sub)units may be saturated or unsaturated, and therefore the term
"alkylamine" encompasses alkenylamines in the description of the invention.
Representative resultant polyalkylamines include: (d) — [NH- , where z is other than 0, and q is 2 or higher; (e) — [NH- — , where y and z are each other than 0, and p
Figure imgf000031_0001
Figure imgf000031_0002
and q are each other than 0; (1) - [NH-(CH2)(x)]n -[NH-(CH2)(y)]p - [NH- ~ , where x, y, and z are each other than 0, and n, p and q are
Figure imgf000031_0003
each other than 0; (g) - [NH-(CH2)(w)]m - [NH-(CH2)(χ)]n ~[NH-
(CH ) y)Jp - [NH-(CH2)(z)]q - , where w, x, y, and z are each other than
0, and m, n, p, and q are each other than 0; (h) —
Figure imgf000031_0004
— [NH-
Figure imgf000031_0005
— [[CH3(CH2)y]N] -(CH2)Z - , where x, n and z are each other than 0; (i) - [NH-(CH2)(w)]p - [[CH3(CH2)χ]N]-(CH2)y - [NH-
Figure imgf000031_0006
— , where w, p, y, z, and p are each other than 0; and (j)
e9.η - [NH-(CH2)(V)]! - [NH-(CH2)(w)]m - [NH-(CII2)(χ)]n -[NH-(CH2)(y)Jp
- [ H-(CH2 z-)]q — , where v, w, x, y, and z are each other than 0, and 1, m, n, p, and q are each other than 0.
As mentioned above R* and R2, independently, can be — NH— , an alkylamine, or a polyalkylamine, and can be the same or different from each other, except that both R1 and R2 cannot be -Nil- in order to (1) preserve the "T- shape" of the resultant compound, and (2) to provide for the stability thereof. It is preferred that - in combination- the combined backbone length of R3R' (or of R4R2) be less than about 40 atoms of nitrogen and carbon, more preferrably less than about 30 atoms of nitrogen and carbon.
In the case where the R^ group adjacent to R-' (or R2 adjacent to R4) includes a terminal nitrogen atom that defines a tertiary center, then a quaternary amine is formed (at that nitrogen atom of R' ) if R3 is an aliphatic group, and a tertiary amine remains (at that nitrogen atom of R-) if R3 is H.
Accordingly, with respect to such resultant R R' or R4R2 structures, representative respective formulas are:
(k) H-(CH2)(W) — [[CH3(CH2)χ][CH3(CH2)y]N] -(CH2)Z - , where w and z are each other than zero; and (1) H — [[CH3(CH2)χl[CH3(CH2)y]N]-
(CH2)Z — , where z is other than zero.
In connection with interpreting the structural diagrams described herein, it is intended that the attachment of R R' — (or R4R~ — ) structures to atom "X" is through the right hand side (as depicted) of the R3R' — , that is, through a CH2 — moiety. The coefficents (i.e. v, w, x, y, and z and 1, m, n, p, and q) as depicted herein represent whole numbers. For the purposes of the invention, "whole number" means 0 and the natural numbers
1,2,3,4,5,6 and up, unless specifically restricted.
With respect to the amphiphiles of the invention including those represented by formulas (a) to (1), it is noted that there are certain preferences concerning the design of such groups depending on whether atom 'X" as it is shown according to structure (I) above, is a nitrogen atom or a carbon atom. If
"X" is nitrogen, then amphiphiles containing R -R* ( or R -R2 ) groups that end in an N atom [ i.e formula (e) where z equals 0 and q=l ; formula (h) where z equals 0] are not preferred, since the resultant N-N linkage involving position
X results in an amphiphile that may be unstable and/or difficult to prepare.
An additional group of structures that are difficult to prepare and/or are unstable is represented, for example, by the R sequence (whether in R*-, or bridging R1 and R3) -NH- CH2-NH-CH - . Accordingly, use of such structures [ i.e. formula (a) where Z equals 1, formula (e) where one or both of y and z equals l]in the practice of the invention is not preferred.
With respect to the design of structures (such as those depicted above) for inclusion in cationic amphiphiles, the following further considerations are of note. Any combination of alternating amine and alkyl moieties creates an R structure within the scope of the invention. A polyalkylamine may be represented, for example, by the formulas above, although many more structures (such structures being within the scope of the invention) can be depicted by extending the number of, or types or combinations of, alkylamine subunits within the amphiphile structure. That further such variations can be made is apparent to those skilled in the art.
It is noted that a polyalkylamine group (or resultant R3R* group) that is very long may interfere, for example, with the solubility of the resultant amphiphile, or interfere with its ability to stably interact with the biologically active molecule selected for intracellular delivery. In this regard, polyalkylamines (or resultant R R' groups) having a backbone length of about 40 nitrogen and carbon atoms, or more, may not be suitable for inclusion in amphiphiles. However, for each such proposed structure, its properties may be determined by experimentation, and its use is nonetheless within the practice of the invention.
3/ Accordingly, specific alkylamine and polyalkylamine structures result as follows:
Table 1 For R' and/or R2
(1) -NH-
(2) -NH-(CH2)(2)-
(3) -NH-(CH2)(3)-
(4) -NH-(CH2)(4)-
(5) -NH-(CH2)(6)-
(6) -NH-(CH2)(3)- NH-(CH2)(4).
(7) -NH-(CH2)(2)- NH-(CH2)(2)-
(8) -NH-(CH2)(4)- NH-(CH2)(3)-
(9) -NH-(CH2)(y)- NH-(CH2)(z)-
( 10) -NH-(CH2)(x)-NH-(CH2)(y }-NI I-(CH2)(z)-
(1 1) -NH-(CH2)(w)-NH-(CH2)(χ)-NH-(CH2)(y)-NII-(CH2)(z)-
(12) -NH-(CH2)(v) -NH-(CH2)(w)-NH-(CH2)(χ)-NH-(CH2)(y)-NH-
Figure imgf000034_0001
(13) -[NH-(CH2)(w)]m - [NH-(CH2)(χ)]n -| [CH3(CH2)y]N] -(CH2)Z -
(14) -[NH-(CH2)(χ)]n -[[CH3(CH2)y]Nl -(CH2)Z -
(15) -[NH-(CH2)(w)]m - [NH-(CH2)(χ)]n -[[CH3(CH2)y]N] -(CH2)Z -
(16) - [[CH3(CH2)χ][CH3(CH2)y]N]-(CH2)z -
(17) -NH-(CH2)(z)- NH -
(18) -NH-(CH2)(y)-NH-(CH2)(z)-NH -
(19) -NH-(CH2)(y)-CH=CH-(CH2)z -
(20) - [NH-(CH2)(w)Jp -[[CH3(CH2)χ]N] -(CH2)y - [NH-(CH2)(z)]q -
^; For R3 and/or
R
(1) H-
(2) CH3-
(3) CH3-(CH2)2-
(4) CH3-(CH2)4-
(5) CH3-(CH2)Z-
(6) CH3-[CH3-(CH2)Z]CH -
(7) CH3-[CH3-(CH2)21CH -
(8) CH3-[[CH3-(CH2)yJ[CH3-(CH2)z]]C -
(9) CH3-(CH2)Z-CH=CH-CH2 -
(10) CH3-[CH3-(CH2)y-CH-CH-(CH2)z]CH -
(1 1) CH3-[[CH3-(CH2)w-CH=CH-(CH2)χ][CH3-(CH2)y-CH=CH- (CH2)Z]]CH -
(12) CH3-[CH3-(CH2)ylCH-(CH2)z -
23 Category A/Group II Amphiphiles
Additionally there are provided cationic amphiphiles of Group II (see Figure 5) capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (II),
Figure imgf000036_0001
wherein:
Z is a steroid;
X is a carbon atom or a nitrogen atom;
Y is a linking group or Y is absent;
R3 is an amino acid, a derivatized amino acid, H or alkyl;
R- is —Nil- , an alkylamine, or a polyalkylamine;
R4 is an amino acid, a derivatized amino acid, H or alkyl;
R2 is — NH- , an alkylamine, or a polyalkylamine; and wherein R* is the same or is different from R2 , except that both R^ and
R2 cannot be --NH-.
Representative amphiphiles provided according to Group II include amphiphiles 87, 91, 93, 95, 97, 99, 100, and 103. With respect to the structural features of these amphiphiles, and the other amphiphiles of Group II, the following should be considered. The steroid group may be selected according to the criteria defined above for the Category A/Group I amphiphiles. Accordingly, preferred amphiphiles include those selected from 3- sterols, wherein the sterol molecule is linked by the 3-O- group thereof, or by N in replacement thereof, to "Y".
The linking group Y of the Group II amphiphiles consists of an N- acylamino acid (or a derivative thereof), or consists of a group (such as > C=O or > C=S) wherein no more than one atom of said group forms a bond with both "X" and "Z". Optionally, group Y may be absent. Representative N- acylamino groups include an N-Acyl serine ( No. 87), an N-Acyl glycine (No. 91), and an N-Acyl aspartic acid ( No. 103). With respect to the use of N- Acyl aspartic acid in amphiphile No. 103, it is noted that, as provided, the gamma carboxyl thereof is further derivatized to an additional alkylamine moiety.
The crtiteria for selection of R* and R2 are as set forth for the Group I amphiphiles. R3 and R4 represent H or alkyl, or may be natural or artificial amino acids including derivatives of either. Representative examples of R3 or R4 amino acid groups include those derived from tryptophan ( No. 97) and from arginine ( No. 95).
Category B/Group HI Amphiphiles
Additionally there are provided cationic amphiphiles of Category B/ Group III (see Figure 6) capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (III),
Figure imgf000038_0001
wherein:
Z is an alkylamine or a dialkylamine, linked by the N-atom thereof, to Y, or directly to X if Y is absent, wherein if Z is a dialkylamine, the alkyl groups thereof can be the same or different;
X is a carbon atom or a nitrogen atom;
Y is a short linking group , or Y is absent;
R3 is H, or a saturated or unsaturated aliphatic group;
R' is — NH- , an alkylamine, or a polyalkylamine;
R4 is II, or a saturated or unsaturated aliphatic group;
R2 is —NH— , an alkylamine, or a polyalkylamine; and wherein R is the same or is different from R2 , except that both R and
R2 cannot be -NH-.
Representative cationic amphiphiles according to the practice of the invention that contain an alkyl amine or dialkylamine as lipophilic group include, for example, N,N-dioctadecyllysineamide; N ' , N ' -dioctadecy l- 1 ,2,6- triaminohexane; N,N-didodecyllysineamide; N,N- didecyllysineamide; spermidine- N,N- dioctadecyl urea; N-myristyllysineamide; and N- (dioctyldecylaminoethyl)-lysineamide . Representative amphiphiles are depicted (Figure 6) as amphiphiles 43, 47, 56, 60, and 73. With respect to the structural features of these amphiphiles, and the other amphiphiles of Group III, the following should be considered.
With respect to the selection of the lipophilic alkylamine or dialkylamine group "Z", Table 2 below provides representative structures.
Table 2 3^ For "Z"
(1) CH3-(CH2)] 3-NH-
(2) CH3-(CH2)z-NH~
(3) [[CH3(CH2)17][CH3(CH2)17]]N-
(4) [[CH3(CH2)j 1][CH3(CH2)1 j]]N-
(5) [[CH3(CH2)9][CH3(CH2)9]]N-
(6) [[CH3(CH2)x][CH3(CH2)y]]N-
(7) [[CH3(CH2)x][CH3(CH2)yCH=CH(CH2)z]]N-
(8) [[CH3(CH2)w][CH3(CH2)χCH-=CH(CH2)yCH=CH(CH2)z]]N-
In connection with the selection of suitable alkylamine or dialkylamine groups for inclusion at position Z in the amphiphiles of the invention, an alkyl chain(s) of the group should not be so large in molecular weight that it interferes with the solubility of the amphiphile, or interferes with its ability to interact with plasmid DNA. Additionally, an alkyl chain of an alkylamine or dialkylamine may include one or more points of unsaturation.
The selection of R groups R-* , R2, R3, and R4 follows that disclosed for the Group I amphiphiles, and these R groups may be selected, for example, from Table I. Linking group Y may be seleected as for the Group I amphiphiles, and preferred examples thereof include — CH2 — , and > C=O.
3"? Category B/Group IV Amphiphiles
Additionally there are provided cationic amphiphiles of Group IV (see Figure 7) capable of facilitating transport of biologically active molecules into cells said amphiphiles having the structure (IV),
Figure imgf000040_0001
(R6) (IV)
wherein:
A and B are independently O, N or S;
R-> and R" are independently alkyl or acyl groups and may be saturated or contain sites of unsaturation;
C is selected from the group consisting of -CH2-, >C=0, and >C=S;
E (analogous to "X" in structures I, II, III) is a carbon atom or a nitrogen atom;
D is a linking group such as -NH(C=O)- or -O(C=O)- , or D is absent;
R3 is H, or a saturated or unsaturated aliphatic group;
R' is — NH— , an alkylamine, or a polyalkylamine;
R4 is H, or a saturated or unsaturated aliphatic group;
R2 is — NH— , an alkylamine, or a polyalkylamine; and wherein R' is the same or is different from R2 , except that both R and
R2 cannot be -NH-.
Representative amphiphiles of Group IV include Nos. 64, 76, 85, 89, 94, 98, 102, 105, 1 10, and 1 1 1. With respect to the structural features of these amphiphiles, and the other amphiphiles of Group IV, the following should be considered.
3r With respect to the selection of R , R2, R3, and R4, the teachings provided for Group I, II, and III amphiphiles are applicable. As aforementioned, group "E" represents a carbon atom or a nitrogen atom.
R-- and R" are independently alkyl or acyl groups, preferrably containing about 8 to about 30 carbon atoms, and such groups may contain one or more points of unsaturation.
With respect to the selection of Group D, linkers such as -NH(C=O)- or -O(C=O)- are preferred, and are depicted such that the left side thereof in intended to bond to "C" and the right side thereof is intended to bond to "E". Optionally, group D may be absent (amphiphile No.94). Additional linkers may be selected based on the teachings provided with respect to Groups I, II, and III above, and based upon the in vivo test date derived ( Figure 15), it is preferred that the linker D be short or absent.
Category C - non T-shaped/steroid-based cationic amphiphiles )
As aforementioned, the invention also provides for formulations of non T-shaped/steroid-based amphiphiles (Category C), and use thereof, such as
Figure imgf000041_0001
(N 1 -spermidine cholesteryl carbamate),
Figure imgf000041_0002
ermosperm ne cholesteryl carbamate), and
3f
Figure imgf000042_0001
(N ' -Spermine cholesteryl carbamate).
Additional Category C amphiphiles that may be used according to the practice of the invention include, for example, those described in U.S. Patent 5, 283,185 to Epand et al. including 3β [N-Ol^N1 - dimethylaminoethane)- carbamoylj cholesterol, termed "DC-chol"; cholestryl-3β- carboxamidoethylene trimethylammonium iodide; cholestryl -3β- oxysuccinamideoethylene trimethylammonium iodide, and the like including β- alanyl cholesterol.
Further such amphiphiles include those that may be patterned upon DOTAP, ChoTB, and ChoSC (Leventis et al., Biochemica et Biophysica Acta, 1023, 1990, pp. 124-132) but not if provided in quaternary form.
An additional class of such amphiphiles is provided by the N ' - (alkylamine) linked cationic facial amphiphiles described in Walker et al., Proceedings of the National Academy of Sciences, USA , 93, 1996, 1585-1590, including, for example, structures described in Table 1 thereof . Category D - non T-shaped/ non steroid-based cationic amphiphiles )
The invention also provides for diverse formulations of non T- shaped/non steroid-based amphiphiles (Category D),and use thereof, such as may be formulated with:
(1) cationic amphiphiles patterned on N-[l(2,3-dioleyloxy)propylJ-N,N,N- trimethylammonium chloride ("DOTMA"), but being non-quaternary variants thereof, that can be further protonated ( see Feigner, et al., Proc. Natl. Acad. Sci. USA, 84, 7413-7417, 1987, and U.S. Patent 4,897,355 to Eppstein et al. ;
(2) cationic amphiphiles patterned on numerous structures depicted in Behr, J- P., Bioconjugate Chemistry, 5, 1994, 382-389, but being non-quaternary i variants thereof (compare therein - Chart 3, C]2GluPhCnN+, and C14GluCnN+ ; Chart 8, TMAG, and the like);
(3) cationic amphiphiles patterned upon l-[2-(acyloxy)ethyl]-2-alkyl
(alkenyl)-3-(2-hydroxyethyl) imidazolium chloride, see Solodin et al.,
Biochemistry, 1995, 34,
13537-13544; and additional species in conformity with this classification as are described in
Ledley et al, Human Gene Therapy , 6, 1995, 1129-1144, and Gao et al.,
Gene Therapy ,2, 1995, 710-722.
Co-lipids
Representative co-lipids that are useful according to the practice of the invention for mixing with one or more cationic amphiphiles include dioleoylphosphatidylethanolamine ("DOPE"), diphytanoylphosphatidyl- ethanolamine, lyso-phosphatidylethanolamines other phosphatidyl- ethanolamines, phosphatidylcholines, lyso-phosphatidylcholines and cholesterol. Typically, a preferred molar ratio of cationic amphiphile to colipid is about 1 :1. However, it is within the practice of the invention to vary this ratio (see Example 3 below), including also over a considerable range.
It is generally believed in the art that preparing cationic amphiphiles as complexes with co-lipids (particularly neutral co-lipids) enhances the capability of the amphiphile to facilitate transfections. Although colipid- enhanced performance has been observed for numerous of the amphiphiles of the invention, the amphiphiles of the invention are active as transfectants without co-lipid. Accordingly, the practice of the present invention is neither to be considered limited by theories as to co-lipid participation in intracellular delivery mechanisms, nor to require the involvement of co-lipids.
Transacylation Reactions
4Y Although heretofore unrecognized in the art, it has been determined also that certain co-lipids may react chemically with certain types of cationic amphiphiles under conditions of co-storage, there resulting new molecular species. Generation of such new species is believed to occur via mechanisms such as transacylation. In this regard, see Figure 4 which depicts a transacylation reaction involving spermine cholesterol carbamate(No.67) and DOPE, there resulting lyso PE species and multiple forms of particular acyl- cationic amphiphile ( designated No. 80).
With respect to such reactions, the following remarks are of interest. With respect to use of amphiphile No.67, it has been observed that a mixture of amphiphile and DOPE, in chloroform solvent, does not appear to participate in such reactions. However, preparing the amphiphile and co-lipid in an aqueous solution where bilayer-containing structures such as liposomes can form will permit transacylation. Additionally, if amphiphile and co-lipid are dried down to a thin film, such as from chloroform (thereby placing the 2 species in intimate contact), then transacylation also occurs, possibly as a result of entropic effects. It is expected that these phenomena would also apply to lyophilized amphiphile/DOPE preparations.
Accordingly, it is highly preferred to maintain such amphiphile /DOPE preparations at very cold temperatures, such as -70 degrees C. Preparation of amphiphile No. 67 as a mono, di, or tri acetate salt has also been determined to slow transacylations.
It is to be understood that therapeutically-effectivc pharmaceutical compositions of the present invention may or may not contain such transacylation byproducts, or other byproducts, and that the presence of such byproducts does not prevent the therapeutic use of the compositions containing them. Rather use of such compositions is within the practice of the invention, and such compositions and the novel molecular species thereof are therefore specifically claimed. Preparation of Pharmaceutical Compositions and Administration Thereof The present invention provides for pharmaceutical compositions that facilitate intracellular delivery of therapeutically effective amounts of biologically active molecules. Pharmaceutical compositions of the invention facilitate entry of biologically active molecules into tissues and organs such as the gastric mucosa, heart, lung, and solid tumors. Additionally, compositions of the invention facilitate entry of biologically active molecules into cells that are maintained in vitro , such as in tissue culture. The amphiphilic nature of the compounds of the invention enables them to associate with the lipids of cell membranes, other cell surface molecules, and tissue surfaces, and to fuse or to attach thereto. One type of structure that can be formed by amphiphiles is the liposome, a vesicle formed into a more or less spherical bilayer, that is stable in biological fluids and can entrap biological molecules targeted for intracellular delivery. By fusing with cell membranes, such liposomal compositions permit biologically active molecules carried therewith to gain access to the interior of a cell through one or more cell processes including endocytosis and pinocytosis. However, unlike the case for many classes of amphiphiles or other lipid-like molecules that have been proposed for use in therapeutic compositions, the cationic amphiphiles of the invention need not form highly organized vesicles in order to be effective, and in fact can assume (with the biologically active molecules to which they bind) a wide variety of loosely organized structures. Any of such structures can be present in pharmaceutical preparations of the invention and can contribute to the effectivenesss thereof.
Biologically active molecules that can be provided intracellularly in therapeutic amounts using the amphiphiles of the invention include:
(a) polynucleotides such as genomic DNA, cDNA, and mRNA that encode for therapeutically useful proteins as are known in the art,
(b) ribosomal RNA;
4z (c) antisense polynucleotides, whether RNA or DNA, that are useful to inactivate transcription products of genes and which are useful, for example, as therapies to regulate the growth of malignant cells; and
(d) ribozymes.
In general, and owing to the potential for leakage of contents therefrom, vesicles or other structures formed from numerous of the cationic amphiphiles are not preferred by those skilled in the art in order to deliver low molecular weight biologically active molecules. Although not a preferred embodiment of the present invention, it is nonetheless within the practice of the invention to deliver such low molecular weight molecules intracellularly. Representative of the types of low molecular weight biologically active molecules that can be delivered include hormones and antibiotics.
Cationic amphiphile species of the invention may be blended so that two or more species thereof are used, in combination, to facilitate entry of biologically active molecules into target cells and/or into subcellular compartments thereof. Cationic amphiphiles of the invention can also be blended for such use with amphiphiles that are known in the art.
Dosages of the pharmaceutical compositions of the invention will vary, depending on factors such as half-life of the biologically-active molecule, potency of the biologically-active molecule, half-life of the amphiphile(s), any potential adverse effects of the amphiphile(s) or of degradation products thereof, the route of administration, the condition of the patient, and the like. Such factors are capable of determination by those skilled in the art.
A variety of methods of administration may be used to provide highly accurate dosages of the pharmaceutical compositions of the invention. Such preparations can be administered orally, parenterally, topically, transmucosally, or by injection of a preparation into a body cavity of the patient, or by using a sustained-release formulation containing a biodegradable material, or by onsite delivery using additional micelles, gels and liposomes. Nebulizing devices, powder inhalers, and aerosolized solutions are representative of methods that may be used to administer such preparations to the respiratory tract.
Additionally, the therapeutic compositions of the invention can in general be formulated with excipients (such as the carbohydrates lactose, trehalose, sucrose, mannitol, maltose or galactose) and may also be lyophilized (and then rehydrated) in the presence of such excipients prior to use. Conditions of optimized formulation for each amphiphile of the invention are capable of determination by those skilled in the pharmaceutical art. By way of example, for spermidine cholesterol carbamate (amphiphile No. 53), it has been determined that use of sucrose is preferred over mannitol in order to prevent formation of amphiphile/DNA aggregates, particularly as the concentration of DNA is increased therein. Addition of such excipients maintains the consistency of lyophilized pharmaceutical compositions during storage, and prevent difficulties such as aggregation, or insolubity, that may likely occur upon rehydration from the lyophilized state.
Accordingly, a principal aspect of the invention involves providing a composition that comprises a biologically active molecule (for example, a polynucleotide) and one or more cationic amphiphiles (including optionally one or more co-lipids), and then maintaining said composition in the presence of one ore more excipients as aforementioned, said resultant composition being in liquid or solid (preferably lyophilized) form, so that: (1) the therapeutic activity of the biologically active molecules is substantially preserved; (2) the transfection-enhancing nature of the amphiphile( or of amphiphile/ DNA complex) is maintained. Without being limited as to theory, it is believed that the excipients stabilize the interaction (complexes)of the amphiphile and biologically active molecule through one or more effects including:
(1) minimizing interactions with container surfaces,
(2) preventing irreversible aggregation of the complexes, and (3) maintaining amphiphile/DNA complexes in a chemically-stable state, i.e., preventing oxidation and/or hydrolysis.
Although the presence of excipients in the pharmaceutical compositions of the invention stabilizes the compositions and faciliates storage and manipulation thereof, it has also been determined that moderate concentrations of numerous excipients may interfere with the transfection- enhancing capability of pharmaceutical formulations containing them. In this regard, an additional and valuable characteristic of the amphiphiles of the invention is that any such potentially adverse effect can be minimized owing to the greatly enhanced in vivo activity of the amphiphiles of the invention in comparison with amphiphilic compounds known in the art. Without being limited as to theory, it is believed that osmotic stress ( at low total solute concentration) may contribute positively to the successful transfection of polynucleotides into cells in vivo . Such a stress may occur when the pharmaceutical composition, provided in unbuffered water, contacts the target cells. Use of such otherwise preferred compositions may therefore be incompatible with treating target tissues that already are stressed, such as has damaged lung tissue of a cystic fibrosis patient. Accordingly, and using sucrose as an example, selection of concentrations of this excipient that range from about 15 mM to about 200 mM provide a compromise betweeen the goals of (1) stabilizing the pharmaceutical composition to storage and (2) mimizing any effects that high concentrations of solutes in the composition may have on transfection performance.
Selection of optimum concentrations of particular excipients for particular formulations is subject to experimentation, but can be determined by those skilled in the art for each such formulation.
Protonation State
An additional aspect of the invention concerns the protonation state of the cationic amphiphiles of the invention prior to their contacting a biological molecule such as plasmid DNA in order to form a therapeutic composition. It is within the practice of the invention to utilize fully protonated, partially protonated, or free base forms of the amphiphiles in order to form such therapeutic compositions. However, for purposes of this invention, the use of a partially protonated cationic amphiphile, or free based form, is preferred. The preparation of the cationic amphiphile in a non-salt form, i.e., in the absence of a source of protons during preparation, is desired. It is noted that the amphiphile may be subjected to various protonation states during preparation, however, a non-fully protonated state is desired at the time of its combination with a neutral co-lipid (such as DOPE), or with an active biological molecule, for example a DNA plasmid. It is further noted that the co-lipid itself may provide a source of protons to the cationic amphilphile. However, the contribution of such protons , under the conditions of manipulation used herein, is not expected to fully protonate the cationic amphiphile. Moreover based on equilibrium considerations it is noted that, at any given time, a population of cationic amphiphiles (including if in contact with co-lipids or therapeutic molecules) will contain a certain percentage of molecules in a fully protonated state. However, so long as the average protonation of the mixture is such that the overall charge indicates that the amphiphiles are not fully protonated, then the cationic amphiphile is considered to not be fully protonated, and its use is within the practice of the invention..
With respect to amphiphile No. 67 (spermine cholesterol carbamate), it has been observed that when providing this amphiphile for a transfecting composition with DOPE (itself provided as a zwitterion), transgene expression was best for the free base, but decreased if the amphiphile was prepared as an acetate salt. Activity decreased step-wise through the mono and di acetate salts and was minimal for the tri-acetate salt. Under the circumstances described, the plasmid DNA provided for contacting with the amphiphile was prepared (without buffer) as a sodium salt in water.
Similar results were observed for amphiphile No. 37 (see Example 11) where provision of the amphiphile in free base form, prior to its contacting co- lipid and plasmid DNA, resulted in an approximate 50-fold improvement in reporter gene expression.
•yr Methods of Syntheses
The following methods illustrate production of certain of the cationic amphiphiles of the invention. Those skilled in the art will recognize other methods to produce these compounds, and to produce also the other compounds of the invention. Group I amphiphiles (A) N -Spermidine cholesteryl carbamate
Spermidine cholesterol carbamate (Figure 1, No. 53) was synthesized according to the following procedure which is outlined in Figure 8. Synthesis of N1, N8-DiCBZ -N -Spermidine Cholesterol Carbamate
N , N - dicarbobenzoxyspermidine (61% yield, m.p. 104 - 105° C) was prepared according to the procedure of S. K. Sharma, M. J. Miller, and S. M. Payne, J. Med. Chem., 1989, 32, 357-367. The N1 , N8 - dicarbobenzoxyspermidine (25 g , 60.5 mmol) and triethylamine (25 ml, 178 mmol) were dissolved in 625 ml of anhydrous methylene chloride, cooled to 0
- 4°C and stirred under N2. Cholesteryl chloroformate (27.2 g, 60.6 mmol)
was dissolved in 250 ml of methylene chloride and added to the reaction over a
20 minute period. A white precipitate formed upon addition. After the addition was complete, the reaction was stirred at 0 - 4°C for 10 minutes and then at room temperature for 1.5 hr. At this point, the white precipitate completely dissolved. The reaction was followed by TLC with hexane/ethayl acetate 6 / 4 as eluent (product Rf = 0.25). To this reaction mixture was added
625 ml of methylene chloride and 625 ml of water. The layers were then allowed to separate. The organic layer was dried over MgSO and filtered.
The filtrate was concentrated in vacuo to give an oil. Vacuum drying was then carried out overnight. This crude product had a glue-like consistency. The crude product was purified by column chromatography (2 kg silica gel, eluent
- hexane / ethyl acetate 6 / 4) to give 46.8 g of the
Figure imgf000051_0001
^ dicarbobenzoxyspermidine)carbamoyl] cholesterol (also described herein as
N - , N8" diCBZ-N4- spermidine cholesterol carbamate) in 93% yield.
Final Synthesis of Spermidine Cholesterol Carbamate
To 6.0 grams of 10% palladium on activated carbon under N was added a solution of 30 grams of 3-β-[N4-(N] ,N8- dicarbobenzoxyspermidine)carbamoyl] cholesterol in 1 liter of ethanol, see Figure 13. The reaction mixture was purged with N2 and stirred under H2
(atmospheric pressure) for 18 hr. The mixture was again purged with N-> and filtered through a 10 g bed of celite. The filter cake was washed with 2 liters of 10% triethylamine in ethanol and the combined filtrates were concentrated in vacuo to a gel. The product was then dried under vacuum overnight to a sticky solid. This crude product was purified by column chromatography (2 kg of silica gel, eluent - 4 L of chloroform / methanol 95 / 5 followed by 30 L of chloroform / methanol / iso-propylamine 95 / 5 / 5, Rf = 0.24) to obtain 13.1 g of the desired spermidine cholesterol carbamate in 64% yield. HPLC (C-18 reversed phase column, linear gradient elution profile - methanol / iso-propanol / water / trifluoroacetic acid 60 / 20 / 20 / 0.1 to methanol / iso-propanol / trifluoroacetic acid 70 / 30 / 0.1 to methanol / iso-propanol / chloroform / trifluoroacetic acid 60 / 20 / 20 / 0.1) analysis of this material showed it to be 99.2% pure with the 7-dehydrocholesterol analog present at a level of 0.8%.
In connection with this example and those that follow, it is noted that all TLC plates were visualized with phosphomolybdic acid. (B) N4- Spermine cholesteryl carbamate
Spermine cholesterol carbamate (Figure 1, No. 67) was prepared according to the following procedure which is outlined in Figure 9. N1^12 -diCBZ-spermine
Benzylchloroformate (1.76g, 1.5 ml, 10.36 mmol) was dissolved in methylene chloride (5 ml) and placed in a three neck flask under a nitrogen atmosphere. Imidazole (1.4 g, 20.6 mmol) was dissolved in methylene chloride (20 ml) and placed in an addition funnel. The three neck flask was cooled to
0°C and the imidazole solution was added gradually over 20 min. The mixture was stirred at room temperature for 1 hour and then methylene chloride ( 25 mL) and citric acid (10%, 25 ml) were added. The layers were separated and the organic fraction was washed with citric acid (10%, 25 ml). The organic component was dried over magnesium sulfate and concentrated in vacuo. The residue was dried under high vacuum for 1 hour at ambient temperature.
To the residue was added dimethylaminopyridine (35 mg), methylene chloride (25 ml) and the mixture was cooled to 0°C, under a nitrogen atmosphere. To an addition funnel was added a solution of spermine (l g, 4.94 mmol) in methylene chloride (25 ml). The spermine solution was added gradually over 15 min. The reaction mixture was stirred overnight at ambient temperature and then concentrated in vacuo. The residue was dissolved in ethyl acetate (80 ml) and washed three times with water (15 ml). The organics were dried over magnesium sulfatc, filtered and concentrated in vacuo to give a crude white solid. The material was purified by flash chromatography (65g silica gel, 100: 100: 10 CHC13: MeOH: NH4OH, product Rf.=0.33), to give
after drying under high vacuum 1.01g (2.146 mmol, 43 % yield) of product.
N ,N*2-diCBZ- N4- spermine cholestryl carbamate
Cholesteryl chloroformate (964 mg, 2.15 mmol) was dissolved in chloroform (10 ml) and added dropwise to a cooled (0°C) solution of N^,N^2- diCBZ spermine (l .Olg, 2.15 mmol), triethylamine (1 ml) in chloroform (10 ml). The reaction was allowed to warm to room temperature and stirred for 2 hours. To the reaction solution was added water (25 ml) and chloroform (25 ml). The layers were separated and the organic fraction dried over magnesium sulfate. The solution was concentrated in vacuo to give a crude material that was purified by flash chromatography (68g silica gel, MeOH / CHCl 1/4, product Rf. =0.36) to give 1.23 g (1.39 mmol, 65% yield) of product. final synthesis of N -Spermine Cholesteryl Carbamate il N1 ,N12-diCBZ-N -spermine cholesteryl carbamate (262 mg, 0.300 mmol) was dissolved in 5 ml of acetic acid and 45 mg of 10% Pd on C was added. The solution was purged with nitrogen and stirred under hydrogen at atmospheric pressure. The hydrogenolysis was allowed to proceed for 1 ■ hours. The reaction mixture was filtered and the catalyst was washed with 40 ml of ethyl acetate / acetic acid 9 / 1 and the filtrate will be concentrated in vacuo to give a residue. The crude product was dissolved in 35 mL of IN
NaOH and extracted three times with 40 ml of chloroform / methanol 9 / 1.
The combined organic fractions were washed with 20 mL of water and dried over Na2SO4. The solution was filtered, concentrated in vacuo and dried under vacuum to give 125 mg of the desired product in 67% yield.
In connection with the above procedure, it is noted that the hydrogenolysis should be carried out under acidic conditions, in order to minimize the poisoning of the catalyst.
Urea analogs - such as spermine or spermidine cholestamine urea - can be prepared by a sequence of reactions well known to those versed in the art of organic synthesis. For example an amine can be treated with an equal molar amount of carbonyldiimidazole followed by the addition of a second amine to give the desired urea. (C) N,N Bis (3-aminopropyl)-O-cholesteryl -3-carbamate
N,N Bis (3-aminopropyl)-O-cholesteryl-3-carbamate (Figure 1 , No.
69) was prepared according to the following procedure.
Bis (3-CBZ aminopropyl) amine was prepared using the method described above for N ,N1 -diCBZ-spermine, except that N-(3-aminopropyl)l,3- propanediamine was substituted for spermine as reactant. The pure product was isolated in 34 % yield by silica gel flash chromatography using as solvent CHC13/ MeOH/ NH4OH 80/20/0.5.
The Bis (3-CBZ aminopropyl) amine so prepared was then reacted with cholesteryl chloroformate according to the method described above for the synthesis of N*, N -DiCBZ -N4-spermidine cholesteryl carbamate. The pure product (N,N Bis ( 3-CBZ aminopropyl)-O-cholesteryl-3-carbamate) was obtained in 73% yield.
Synthesis of N,N Bis(3-aminopropyl)-O-cholesteryl-3-carbamate was completed by hydrogenolysis of the CBZ groups from N,N Bis(3-CBZ aminopropyl)-O-cholesteryl-3-carbamate following the procedure described above in relation to the synthesis of N -spermidine cholesteryl carbamate. The product was obtained in 23% yield without silica gel chromatography purification.
(D) N.N Bis (6-aminohexyl)-O-cholesteryl -3- carbamate.
N,N Bis (6-aminohexyl)-O-cholesteryl-3-carbamate (Figure 1 , No. 70) was prepared according to the following procedure.
First, Bis (6-CBZ aminohexyl) amine was prepared using the method described above for N ,N^2 -diCBZ-spermine, except that Bis(hexamethylene)triamine was substituted for spermine as reactant. Pure product was isolated in 24% yield by recrystallization from toluene.
Bis (6-CBZ aminohexyl) amine was then reacted with cholesteryl chloroformate according to the method described above for the synthesis of N' , N -DiCBZ -N -spermidine cholesteryl carbamate. Product N,N Bis(6- CBZ aminohexyl)-O-cholesteryI-3-carbamate was isolated in 40% yield by silica gel flash chromatography using hexanes/ethyl acetate 7/3 .
(E) Lysine 3-N- dihydrocholesteryl carbamate
Lysine 3-N- dihydrocholesteryl carbamate (Figure 1 , panel C) was prepared according to the following procedure.
To a solution of dihydrocholesterol (5.0 g, 12.9 mmol, Aldrich), phthalimide (2.0 g, 13.6 mmol, Aldrich), and triphenylphosphine (3.8 g, 13.6 mmol, Aldrich) in THF (20 ml, Aldrich) stirred at 0° C under a nitrogen atmosphere was added dropwise diethylazodicarboxylate (2.3 ml, 14.5 mmol,
Aldrich). Upon the completion of addition the reaction mixture was allowed
5~3 to warm to ambient temperature and stirred overnight. The reaction mixture was concentrated in vacuo to a residue. This residue was dissolved in 50 ml hexane / ethyl acetate 95 / 5 and a precipitate formed. The mixture was filtered. The filtrate was concentrated to dryness in vacuo, dissolved in 25 ml of hexane / ethyl acetate 95 / 5 and chromatographed on 200 g silica gel (eluent 2 L hexane / ethyl acetate 95 / 5 then 1 L hexane / ethyl acetate 90 / 10). A 76% yield of the desired 3-phthalimidocholestane (5.43 g) was obtained.
The 3-phthalimidochoIestane (5.40 g, 9.75 mmol) was dissolved in 60 mL of methanol and anhydrous hydrazine (3.1 ml, 99 mmol) was added. The reaction mixture was stirred and heated at reflux under a nitrogen atmosphere for 4 hr. This mixture was then cooled to room temperature, 3.1 mL of concentrated HC1 was added and the resulting mixture was heated at reflux overnight. Upon cooling to ambient temperature, 100 ml of diethyl ether and 50 ml of 1 N NaOH were added (final pH of 10.1) and the layers were separated. The aqueous layer was extracted with 50 ml of diethyl ether and the combined organic fractions were filtered. The filtrate was concentrated in vacuo and the residue was purified by silica gel chromatography (chloroform / methanol 90 / 10) to give 2.24 g of 3-aminocholestane in 59 % yield.
L-Na,Ne-diBOClysine N-hydroxysuccinimide ester (286 mg, 0.644 mmol, Sigma) and 3-aminocholestane (250 mg, 0.644 mmol) were dissolved in
5 mL of methylene chloride, 0.1 mL of triethylamine was added and the resulting solution was stirred under a nitrogen atmosphere at ambient temperature overnight. To the reaction mixture was added 10 mL of water and
25 mL of methylene chloride and the layers were separated. The aqueous layer was extracted with 25 mL of methylene chloride and the combined organic fractions were dried over MgSO4 and filtered. The filtrate was concentrated in vacuo and the residue was purified by chromatography on 25 g of silica gel (eluent - hexane / ethyl acetate 6 / 4, sample applied in hexane / ethyl acetate 9 / 1). The purified material was dissolved in 25 mL of chloroform and HC1 gas was bubbled through the solution for 2 hr. followed by nitrogen for 10 min. The solution was concentrated in vacuo to give 299 mg of the desired product in 79% yield as the dihydrochloride salt.
(F) N -* ,N -Bis(3-aminopropyI)-N4-spermidine cholesteryl carbamate
N ,N -Bis(3-aminopropyl)-N4-spermidine cholesteryl carbamate
(Figure 1, No. 75) was prepared according to the following procedure.
N -Spermidine cholesteryl carbamate (1.14g, 2.04 mmol) was dissolved in
MeOH (5 mL). Freshly distilled acrylonitrile (0.28 mL, 4.29 mmol) was added and the solution was stirred at room temperature for 18 h. The solvent was concentrated in vacuo to give an oil. Vacuum drying was then carried out overnight. The crude product was purified by column chromatography (125 g silica gel, eluent - CHC13 MeOH 1/9) to give 1.15 g (85 %) of the N1.N8-Bis
(cyanoethyl) N -Spermidine cholesteryl carbamate.
Raney Nickel 50% slurry (1.2 g, Aldrich) was placed in a Parr Bomb with 1M
NaOH in 95% EtOH (50 mL). The N 1,N8-Bis (cyanoethyl) N4-Spermidine cholesteryl carbamate. was dissolved in EtOH (35 mL) and added to the bomb.
The vesicle was evacuated and placed under Argon pressure (80-100 psi), three times and then evacuated and placed under Hydrogen pressure (100 psi), three times. The reaction was stirred under hydrogen pressure (100 psi) at room temperature for 72h. The vesicle was evacuated and placed under argon pressure. The catalyst was removed by filtration. The filtrate was concentrated in vacuo . The resulting oil was dissolved in 2:1 CH2C12: MeOH
(100 mL) and washed with H2O (35 and 25 mL). The organic layer was dried over Na2SO4 and filtered. The filtrate was concentrated in vacuo and the residue was purified by chromatography on 100 g of silica gel (eluent - CHCl3/MeOH/conc. NH4OH 40/25/10, sample applied in CHCl3/MeOH
40/25). The purified material was concentrated in vacuo with iPrOH (3 X 50 mL) and CH2C12(3X50 mL) and then vacuum dried to give 986 mg (85%) of
Nl ,N8-Bis(3-aminopropyl)-N4-spermidine cholesteryl carbamate. (G) N(N4-3-aminopropyl-spermidine) cholesteryl carbamate
N(N4-3-aminopropyl-spermidine) cholesteryl carbamate (Figure 1 , No. 78) was prepared as follows:
N , N°-dicarbobenzoxyspermidine (1.0 g, 2.4 mmol) was dissolved in
MeOH (10 mL). Freshly distilled acrylonitrile (0.3 mL, 4.5 mmol) was added and the reaction was stirred at room temperature for 18 h. The solvent was concentrated in vacuo to give an oil. The crude product was purified by column chromatography (100 g silica gel, eluent - CHCl3/MeOH 1/19) to give
1.10 g (97 %) of N -2-Cyanoethyl-N % N8 - dicarbobenzoxyspermidine.
The N -2-Cyanoethyl-N , N -dicarbobenzoxyspermidine (0.5 g, 1.07 mmol) was dissolved in MeOH (5 mL) and CoCl (280 mg, 2.15 mmol,
Aldrich) was added. The blue solution was cooled in an ice bath and NaBH4
(405 mg, 10.7 mmol, Aldrich) was added in portions over 15 min. The resulting black solution was stirred at room temperature for 1 h. The black solution turned blue over this period. To the reaction was added CH2Cl2/MeOH 2/1 (30 mL). A black ppt formed. To this was added H2O
(20mL) and the mixture was filtered. The resulting layers were separated and the organic layer dried with MgS04. The drying agent was filtered and the filtrate concentrated in vacuo to give an oil. The crude product was purified by column chromatography (50 g silica gel, eluent - CHCl3/MeOH/conc
NH4OH 100/100/5) to give 309 mg (62 %) of the N^-aminopropyl-N 1 , N8
- dicarbobenzoxyspermidine.
To the N -3-aminopropyl-N , N8 - dicarbobenzoxyspermidine (300 mg, 0.66 mmol) dissolved in CH C12 was added Et3N under N2. Cholesteryl chloro formate (326 mg, 0.726 mmol, Aldrich) was dissolved in CH2C12 and added to the reaction dropwise. The mixture was stirred for 2h at room temperature. After adding CH2C1 (25 mL) and H O (10 mL), the layers were separated. The organic layer was dried with MgSO4 and filtered. The filtrate was concentrated in vacuo to give 640 mg of crude product. The residue was purified by chromatography on 80 g of silica gel (eluent - CHC13 / MeOH 90 /10, sample applied in CHC13 / MeOH 90/10). The purified material was concentrated in vacuo and then vacuum dried to give 329 mg
(57%) of N-(N -3-aminopropyl-N , N8 - dicarbobenzoxyspermidine) cholesteryl carbamate.
To 10% Pd on carbon (65 mg, Aldrich) was added a solution of N-(N4-
3-aminopropyl-N , N8 - dicarbobenzoxyspermidine) cholesteryl carbamate (300 mg) in acetic acid (25 mL). The reaction was placed under H2 and stirred at room temperature overnight. After being placed under N2, the reaction was filtered. The catalyst was washed with 10 % acetic acid in EtOAc (50 mL).
The filtrate was concentrated in vacuo to give an oil. The oil was dissolved in 2/1 CII2Cl2/MeOH (35 mL) and washed with 1 M NaOH (15 mL). The organic layer was dried with MgSO4 and filtered. The filtrate was concentrated in vacuo and vacuum dried to give 196 mg (93%) of N-(N4-3- aminopropylspermidine) cholesteryl carbamate.
(II) N-fN N4,N "Tris (3-aminopropyl) spermidine! cholesteryl carbamate
N-[N ,N ,N "Tris (3-aminopropyl) spermidine] cholesteryl carbamate (Figure 1 , No. 96) was prepared by reacting N-(N4-3-aminopropylspermidine) cholesteryl carbamate with acrylonitrile (90% yield) and subsequent reduction of the di adduct with Raney nickel (75 % yield) as described for the preparation of N',N8Bis(3-aminopropyl)-N4-spermidine cholesteryl carbamate. (I) N,N-Bis(4-aminobutyl) cholesteryl carbamate
N,N-Bis(4-aminobutyl) cholesteryl carbamate (Figure 1 , No. 82) was prepared as follows.
To a mixture of Benzylamine (2.0 g, 18.6 mmol, Aldrich), Na2CO
(4.4g, 42 mmol) and KI (1.4 g, 9.5 mmol) in n-butanol (50 mL) was added 4-
Chlorobutyronitrile (4.0 mL, 95 mmol) under nitrogen. The reaction was stirred at reflux of 48 h under nitrogen. After cooling to room temperature,
6 diethyl ether (50 mL) was added and the precipitate filtered off. The filtrate was concentrated in vacuo to an oil. Toluene ( 100 mL) was added and the solution was concentrated in vacuo . Chloroform (100 mL) was added and again the solution was concentrated in vacuo and then vacuum dried for 18 h.
The resulting oil was dissolved in Chloroform (100 mL) filtered and concentrated in vacuo. The crude product was purified by column chromatography (250 g silica gel, eluent - hexanes/EtOAc 60/40) to give
3.75g (97 %) of N,N-Bis (3-cyanopropyl) benzylamine.
The N,N-Bis (3-cyanopropyl) benzylamine (3.7 g, 17.8 mmol) was dissolved in EtOH (150 mL) and Acetic acid (4 mL) was added. This solution was added to 10% Pd on carbon (400 mg) under N2. The mixture was placed under H2 and the reaction stirred for 18 h at room temperature. The reaction was placed under N2. The catalyst was filtered off and washed with EtOH
(150 mL). The filtrate was concentrated in vacuo , chloroform (50 mL) was added and again concentrated in vacuo . The resulting oil was vacuum dried for 0.5 h and used directly in the next reaction. To this oil dissolved in CH2C12
(lOOmL) was added Et3N (5 mL, 35 mmol) under N2 and the solution cooled in an ice bath. Cholesteryl chloro formate (6.2 g, 13.87 mmol) was dissolved in CH2CI2 (100 mL) and this solution was added to the reaction dropwise over
10 min. The cooling bath was removed and the reaction stirred at room temperature for 18 h under N2. CH2C12 (100 mL) and H2O (100 mL) was added and the resulting layers were separated. The organic layer was dried with MgSO4 and filtered. The filtrate was concentrated in vacuo and vacuum dried for 1 h. The crude product was purified by column chromatography
(600 g silica gel, eluent - hexanes/EtOAc 60/40) to give 1.05g (10 %) of N,N-
Bis (3-cyanopropyl) cholesteryl carbamate.
Raney Nickel 50% slurry (1.2 g) was placed in a Parr Bomb with 1M
NaOH in 95% EtOH (50 mL). The N,N-Bis (3-cyanopropyl) cholesteryl carbamate (1.0 g, 1.77 mmol was dissolved in EtOH (100 L) and added to the
5T bomb. The vesicle was evacuated and placed under Argon pressure (80-100 psi), three times and then evacuated and placed under Hydrogen pressure ( 100 psi), three times. The reaction was stirred under hydrogen pressure (100 psi) at room temperature for four days. The vesicle was evacuated and placed under argon pressure. The catalyst was removed by filtration. The filtrate was concentrated in vacuo . The resulting oil was dissolved in 2:1 CH2CI2: MeOH
(250 L) and washed twice with H2O (75 and 50 mL). The organic layer was dried over Na2S04 and filtered. The filtrate was concentrated in vacuo and the residue was purified by chromatography on 1 10 g of silica gel (eluent - CHCl3/MeOH/iPrNH2 95/5/5, sample applied in CHCl3/MeOH 95/5). The purified material was concentrated in vacuo and then vacuum dried to give 900 mg (85%) of N,N"Bis(4-aminobutyl) cholesteryl carbamate.
(J) N,N-Bis(N'-3-aminopropyl-4-aminobutyl) cholesteryl carbamate
N,N-Bis(N'-3-aminopropyl-4-aminobutyl) cholesteryl carbamate (Figure 1, No. 83) was prepared by reacting N,N"Bis(4-aminobutyl) cholesteryl carbamate with acrylonitrile (82% yield) and subsequent reduction of the di acrylonitrile adduct with Raney nickel (81 % yield) as described for the preparation of N\N8-Bis(3-aminopropyl)-N4-spermidine cholesteryl carbamate. (K) N4 Spermidine cholesteryl carboxamide
N4 Spermidine cholesteryl carboxamide ( Figure 1 , No. 90) was prepared as follows.
A solution of cholesteryl chloride (5.0 g, 12.3 mmol) in THF (50 mL) was added dropwise over 0.5 h under reflux to Magnesium turnings (390 mg) in THF (25 mL). Initially a pinch of Iodine and three drops of Iodomethane were added to initiate the reaction. After refluxing for 3 h. the reaction was cooled to room temperature. This mixture was poured onto Dry ice (10 g) and then stirred for lh. This solution was cooled in an ice bath and added to ice cold 1 M H2SO4 (100 mL). After stirring for 5 min., sodium chloride (1 g) and
5*7 diethyl ether (100 mL) was added. The layers were separated and the aqueous layer was extracted with diethyl ether (100 mL). The combined organic layers were washed with a solution of Sodium thiosulfate pentahydrate(120 mg) in H2O (30 mL). The organic layer was concentrated in vacuo and vacuum dried for 18 h. The crude solid was titrated with hexanes (25 mL). After filtration the solid was washed with ice cold hexanes (10 mL). The solid was vacuum dried for lh. The cholesteryl carboxylic acid obtained (3.0 g, 59 %) was ca. 90
% pure and used without further purification.
Cholesteryl carboxylic acid (500 mg, 1.2 mmol) and N- hydroxysuccinimide (140 mg, 1.2 mmol) was dissolved in CH2CI2 . To this solution was added Dicyclohexylcarbodiimide (275 mg, 1.32 mmol) was added and the reaction was stirred under N2 for 2h. N , N - dicarbobenzoxyspermidine (474 mg, 1.2 mmol) and Et N (1.0 mL, 7.1 mmol) was added and the reaction was stirred under N2 for 72 h. The reaction was filtered and the precipitate was washed with CH2CI2 (50 mL). The filtrate was washed with H20 (25mL). The separated organic layer was dried over
MgSO and filtered. The filtrate was concentrated in vacuo and the residue was purified by chromatography on 150 g of silica gel (eluent - hexanes / EtOAc 1/ 1). The purified material was concentrated in vacuo and then vacuum dried to give 680 mg (70%) of N1,N8-dicarbobenzoxy-N4-spermidine cholesteryl carboxamide.
The carbobenzoxy group were removed from N • ,N8-dicarbobenzoxy- N4- spermidine cholesteryl carboxamide as described in the preparation of N -spermidine cholesteryl carbamate. The purified product, N4 Spermidine cholesteryl carboxamide, was obtained in 53 % yield. Group II Amphiphiles
(A) N I , N -Bis(Arginine carboxamide)-N4-spermidine cholesteryl carbamate
Co W, N -Bis(Arginine carboxamide)-N4-spermidinc cholesteryl carbamate (Figure 5, No. 95) was prepared as follows.
To N(a),N(e),N(e) (alpha, epsilon, epsilon) -tricarbobenzoxyArginine in CH2C12 (25 mL) was added N-hydroxysuccinimide (100 mg, 0.89 mmol) and dicyclohexylcarbodiimide (240 mg, 0.89 mmol). The mixture was stirred under N2 at room temperature for 2.5 hours. N4- Spermidine Cholesteryl
Carbamate (250 mg, 0.448 mmol) and Et3N ( 0.25 mL, 1.8 mmol) was added and the reaction stirred at room temperature under N2 for 72 h. The reaction was filtered and the precipitate was washed with CH2CI2 (20 mL). The filtrate was washed with H2O (20 mL). The separated organic layer was dried over MgSO4 and filtered. The filtrate was concentrated in vacuo and the residue was purified by chromatography on 70 g of silica gel (eluent - CIIC13 /
MeOH 95/ 5). The purified material was concentrated in vacuo and then vacuum dried to give 533 mg (71%) of N1 , N8-Bis (N(a),N e),N(e)- tricarbobenzoxyArginine carboxamide)- N -spermidine cholesteryl carbamate.
The carbobenzoxy group were removed from N\ N8-Bis (N(a),N(e),N e)- tricarbobenzoxyArginine carboxamide)-N4-spermidine cholesteryl carbamate as described in the preparation of N-(N4-3- aminopropylspermidine) cholesteryl carbamate. The product, N , N8- Bis(Arginine carboxamide)-N4-spermidine cholesteryl carbamate was obtained in 27 % yield. Group III Amphiphiles (A) N,N-Dioctadecyllysineamide
N,N- dioctadecy llysineamide( Figure 6, No.73) was prepared according to the following procedure. N,N-dioctadecylamine (1.35 g, 2.58 mmol, Fluka) and L-Na,Ne-diBOClysine N-hydroxysuccinimide ester ( 1.00 g, 2.58 mmol, Sigma) were combined in 15 ml of methylene chloride and 2 ml triethylamine was added. The reaction mixture was heated briefly to effect complete dissolution and then stirred at ambient temperature overnight. Water (20 ml)
& and methylene chloride (50 ml) were added to the reaction mixture and the layers were separated. The aqueous fraction was extracted a second time with
50 ml methylene chloride. The combined organic fractions were dried over MgSO4, filtered and concentrated in vacuo. The residue was purified by column chromatography (150 g silica gel , eluent - hexane/ethyl acetate 8/2).
The purified material, N,N-dioctadecyl-Na,Ne-diBOC lysineamide(l .59 g) was dissolved in 25 ml of chloroform and stirred for 2 hr. while FIC1 gas was bubbled through the solution. This solution was purged with N2 gas and concentrated in vacuo. N,N -dioctadecyllysineamide (1.34 g) was obtained in
68% yield as the di HC1 salt.
(B) N * ,N -* -Dioctadecyl- 1.2,6-triaminohexane
N ,N -Dioctadecy l-L2,6-triaminohexane (Figure 6, No. 47) was prepared as follows. To N,N-Dioctadecyl-Na,Ne-diBOClysineamide (760 mg,
0.823 mmol) in 30 ml anhydrous THF stirred at ambient temperature was added LiAlH4 (185 mg, 4.87 mmol) in portions. The reaction mixture was stirred at ambient temperature overnight under a nitrogen atmosphere. The reaction was quenched by the dropwise addition of 2 ml water and the resulting solution was concentrated in vacuo. To this residue was added in order 10 mL of 1 M HC1, 50 ml of methylene chloride, and 10 ml of 1M
NaOH (final pH 10). The layers were separated and the aqueous fraction was extracted a second time with 50 ml of methylene chloride. The combined organic layers were dried over MgSO and filtered. The filter cake was washed with 50 ml of methylene chloride. The combined filtrates were concentrated in vacuo to give 700 mg of crude product. The crude product was purified by column chromatography (80 g silica gel, eluent - hexane/ethyl acetate 7/3). The fractions containing the purified product were combined and concentrated in vacuo to obtain 490 mg of the product protected as the diBOC derivative. To 200 mg of this diBOC derivative was added 4 ml of chloroform and 1 ml of TFA. The resulting reaction mixture was stirred at ambient temperature for 2 hr and concentrated in vacuo . The residue was dissolved in 25 ml of water and 25 mL of methylene chloride and adjusted to pH 10 with approximately 2 ml of concentrated ammonium hydroxide. The layers were separated and the aqueous layer was extracted a second time with
25 ml of methylene chloride. The organic fractions were combined, dried over Na SO and concentrated in vacuo . The resulting residue was dissolved in 10 ml of diethyl ether, HC1 gas was bubbled through the solution for 2 minutes and the solution was cooled at 4° C overnight. The precipitated product was collected by filtration, washed with cold (4° C) diethyl ether, and dried under vacuum to obtain 160 mg of the desired product in 67% yield.
Group IV Amphiphiles
(A) 1 -(N -spermine)-2,3-dilaurylglycerol carbamate l-(N4-spermine)-2,3-dilaurylglycerol carbamate (Figure 7, No. 89) was prepared as follows. A solution of 3-benzyloxy-l,2-propanediol (1.00 g, 5.49 mmol) in THF (20 mL) was added to a suspension of sodium hydride (60% w/w in oil, 550 mg, 13.725 mmol) in THF (30 mL) and allowed to reflux overnight under dry nitrogen. A solution of dodecyl methane sulfonate (3.39 g, 12.078 mmol) in THF (20 mL) was added and the reaction was refluxed for another two days. After cooling to room temperature the reaction was filtered through a bed of Celite, rinsing with THF. The filtrate was reduced in vacuo to a yellow oil which was redissolved in diethyl ether ( 100 mL). The ether solution was washed with 0.1 N NaOH (30 mL) and dH2O (2 x 30 mL). The organic layer was dried over magnesium sulfate, filtered and reduced in vacuo to a red-brown oil. The crude material was purified by flash column chromatography (300 g silica gel) eluting with 3% ethyl acetate/ hexanes. The desired product was isolated as a pale yellow oil and characterized by * H NMR as 3-OBn-l,2-dilaurylglycerol (1.70 g, 60%). 3-OBn-l,2- dilaurylglycerol (1.70 g, 3.28 mmol) in ethanol (100 mL) was stirred with 10% Pd/C (250 mg, 15 wt%) under a hydrogen atmosphere for 24 hours. The reaction was flushed with nitrogen and filtered through Celite, rinsing with ethanol, to remove the catalyst. The filtrate was reduced in vacuo to a solid. The crude material was purified by flash column chromatography (140 g silica gel) eluting with 10% ethyl acetate/ hexanes. The desired product was isolated as a white solid and characterized by 'H NMR as 1,2-dilaurylglycerol (1.23g, 88%).
A 1.93 M solution of phosgene in toluene (0.77 mL, 1.49 mmol) was added to a solution of 1,2-dilaurylglycerol (580 mg, 1.35 mmol) and N,N- diisopropylethylamine (0.26 mL, 1.49 mmol) in methylene chloride (10 mL) and stirred overnight. A solution of N%N 1 *--di-CBz-spermine*2HCl (734 mg, 1.35 mmol) in 60: 25: 4 chloroform methanol/ water (80 mL) was added. After 3 hours another equivalent of N,N-diisopropylethylamine (0.26 mL, 1.49 mmol) was added. An additional 0.5 equivalents of N,N- diisopropylethylamine (0.13 mL, 0.75 mmol) was added three hours later and the reaction was allowed to stir overnight under nitrogen at ambient temperature. The reaction was washed with 1 M NaOH (20 mL) and dH2O (15 mL). The organic layer was separated, dried over magnesium sulfate, filtered and reduced in vacuo to a white solid The crude material was purified by flash column chromatography (125 g silica gel) eluting with 90: 10: 0.5 chloroform/ methanol/ ammonium hydroxide. The desired product was isolated as an oil and characterized by -Η NMR as l-(N -(N^,N^2-di-CBz- spermine))-2,3-dilaurylglycerol carbamate (188 mg, 15%).
The 1-(N4-(N ,N^2-di-CBz-spermine))-2,3-dilaurylglycerol carbamate (188 mg, 0.203 mmol) was dissolved in glacial acetic acid (10 mL) and stirred with 10% Pd/C (45 mg, 24 wt %) under a hydrogen atmosphere for 5 hours. The catalyst was removed by vacuum filtration rinsing with 10% acetic acid/ ethyl acetate (10 mL) The filtrate was reduced to an oil by rotary evaporation. The resulting oil was dissolved in 10% methanol/ chloroform (85 mL) and was washed with 1M NaOH (15 mL) and dH2O (10 mL). The organic layer was separated, dried over magnesium sulfate, filtered and reduced in vacuo to an oil. The product was characterized by Η NMR as l-(N -spermine)-2,3- dilaurylglycerol carbamate (125 mg, 94%).
Other amphiphiles of the invention may be prepared according to procedures that are within the knowledge of those skilled in art.
s Examples
The following Examples are representative of the practice of the invention. Example 1 - Cell Transfection Assay
Separate 3.35 μmole samples of spermidine cholesterol carbamate (amphiphile No. 53) and the neutral lipid dioleoylphosphatidylethanolamine ("DOPE") were each dissolved in chloroform as stock preparations. Following combination of the solutions, a thin film was produced by removing chloroform from the mixture by evaporation under reduced pressure (20 mm Hg). The film was further dried under vacuum ( 1 mm Hg) for 24 hours. As aforementioned, some of the amphiphiles of the invention participate in transacylation reactions with co-lipids such as DOPE, or are subject to other reactions which may cause decomposition thereof. Accordingly, it is preferred that amphiphile/co-lipid compositions be stored at low temperature, such as - 70 degrees C, until use.
To produce a dispersed suspension, the lipid film was then hydrated with sterile deionized water (1 ml) for 10 minutes, and then vortexed for 1 minute ( sonication for 10 to 20 seconds in a bath sonicator may also be used, and sonication has proved useful for other amphiphiles such as DC-chol). The resulting suspension was then diluted with 4 ml of water to yield a solution that is 670μM in cationic amphiphile and 670μM in neutral colipid.
Experiments were also performed using spermine cholesterol carbamate (amphiphile No. 67) and other amphiphiles of the invention. With respect to spermine cholesterol carbamate, the optimum molar ratio of amphiphile to DOPE under the conditions tested was determined to be 1 :2, not 1 :1. Optimized ratios for many of the amphiphiles of the invention are reported in Figures 13, 14 and 15, and are readily determined by those skilled in the art. For preparation of the transfecting solution, DNA encoding for β- galactosidase (pCMVβ, ClonTech., Palo Alto, CA) was dissolved in OptiMEM culture medium (Gibco/ BRL No. 31885-013). The resulting solution had a DNA concentration of 960 μM (assuming an average molecular weight of 330 daltons for nucleotides in the encoding DNA).
The following procedure was used to test a 1 : 1 molar mixture of the cationic amphiphile spermidine cholesterol carbamate in combination with DOPE. A 165 μl aliquot of spermidine cholesterol carbamate (670 μM) containing also the colipid ( at 670 μM ) was pipetted into 8 separate wells in a 96-well plate containing OptiMEM (165μl) in each well. The resulting 335 μM solutions were then serially diluted 7 times to generate 8 separate amphiphile-containing solutions having concentrations ranging from 335 μM to 2.63 μM, with each resultant solution having a volume of 165 μl. Thus, 64 solutions were prepared in all, there being 8 wells each of 8 different concentrations of amphiphile/DOPE.
Independently, DNA solutions (165μl, 960μM) were pipetted into 8 wells containing OptiMEM (165 μl), and the resulting 480μM solutions were then serially diluted 7 times to generate 8 separate 165 μl solutions from each well, with the concentrations of DNA in the wells ranging from 480 μM to 3.75 μM.
The 64 test solutions (cationic amphiphile: neutral lipid) were then combined with the 64 DNA solutions to give separate mixtures in 64 wells, each having a volume of 330μl, with DNA concentrations ranging from 240 μM to 1.875 μM along one axis, and lipid concentrations ranging from 167 μM to 1.32 μM along the other axis. Thus 64 solutions were prepared in all, each having a different amphiphile: DNA ratio and/or concentration. The solutions of DNA and amphiphile were allowed to stand for 15 to 30 minutes in order to allow complex formation. -1 A CFT-1 cell line (human cystic fibrosis bronchial epithelial cells immortalized with papillomavirus) provided by Dr. James Yankaskas, University of North Carolina, Chapel Hill, was used for the in vitro assay. The cells are homozygous for a mutant allele (deletion of phenylalanine at position 508, hereinafter Δ F508 ) of the gene encoding for cystic fibrosis transmembrane conductance regulator ("CFTR") protein. CFTR is a cAMP- regulated chloride (Cl") channel protein. Mutation of the CFTR gene results typically in complete loss ( or at least substantial impairment) of Cl" channel activity across, for example, cell membranes of affected epithelial tissues.
The Δ F508 mutation is the most common mutation associated with cystic fibrosis disease. For a discussion of the properties of the Δ F508 mutation and the genetics of cystic fibrosis disease see, in particular, Cheng et al., Cell, 63, 827-834 (1990). See also Riordan et al., Science, 245, 1066-1073 (1989); published European Patent Application No. 91301819.8 of Gregory et al., bearing publication number 0 446 017 Al ; and Gregory et al., Nature, 347, 382-385 (1990).
The cells were cultured in Hams Fl 2 nutrient media (Gibco/ BRL No. 31765-027) supplemented with 2% fetal bovine serum ("FBS", Irvine Scientific, No. 3000) and 7 additional supplements. Cells were then plated into 96-well tissue culture plates at a density of approximately 7,500 cells/well. Before being used in the assay, cells were allowed to grow for periods of 5-7 days until a confluent pattern had been achieved.
Following the allotted time period, three 96-well plates with CFT-1 cells were aspirated in order to remove the growth medium. The various concentrations of DNA-lipid complex (in 100 μl aliquots) were transferred to each of three 96-well plates bringing the DNA-lipid complexes in contact with the cells. DNA-only/cell and lipid-only/cell control wells were also prepared on one of the three plates.
-f The 100 μl solutions of DNA-lipid complex were maintained over the cells for 6 hours, after which 50 μl of 30% FBS (in OptiMEM) was added to each well. After a further 20-hour incubation period, an additional 100 μl of 1 % FBS in OptiMEM was also added. Following a further 24-hour incubation period, cells were assayed for expression of protein and β- galactosidase.
For the assays, the resultant medium was removed from the plates and the cells washed with phosphate buffered saline. Lysis buffer (50 μl, 250 mM Tris-HCl, pH 8.0, 0.15% Triton X-100) was then added, and the cells were lysed for 30 minutes. The 96-well plates were carefully vortexed for 10 seconds to dislodge the cells and cell debris, and 5 μl volumes of lysate from each well were transferred to a plate containing lOOμl volumes of Coomassie Plus® protein assay reagent (Pierce Company, No. 23236). The protein assay plates were read by a Bio-Rad Model 450 plate-reader containing a 595nm filter, with a protein standard curve included in every assay.
The level of β-galactosidase activity in each well was measured by adding phosphate buffered saline (50 μl) to the remaining lysates, followed by addition of a buffered solution consisting of chlorophenol red galactopyranoside (100 μl, 1 mg per ml, Calbiochem No. 220588), 60 mM disodium hydrogen phosphate pH 8.0, 1 mM magnesium sulfate, 10 mM potassium chloride, and 50 mM 2-mercaptoethanol. The chlorophenol red galactopyranoside, following enzymatic ( β-galactosidase) hydrolysis, gave a red color which was detected by a plate-reader containing a 570 nm filter. A β- galactosidase (Sigma No. G6512) standard curve was included to calibrate every assay.
Following subtraction of background readings, optical data determined by the plate-reader allowed determination of β-galactosidase activity and protein content. In comparison to the amount of β-galactosidase expressed by known transfectants, for example, DMRIE (l,2-dimyristyloxypropyl-3-
6<? dimethyl-hydroxyethyl ammonium bromide), compounds of the invention are particularly effective in transfecting airway epithelial cells and inducing therein β-galactosidase expression. Relative to DMRIE:DOPE (1 : 1 ), the spermidine cholesterol carbamate: DOPE mixture (also 1 :1) demonstrated transfection efficiency improved by a factor of about 5 (see, for example, Figures 13, 14 and 15).
Example 2 - Transfection of the Gene Encoding for Human Cystic Fibrosis Transmembrane Conductance Regulator Protein
The ability of the cationic amphiphiles of the invention to transfect cells and to induce therein biochemical corrections was demonstrated with a separate in vitro assay. Immortalized human cystic fibrosis airway cells (CFT- 1 , as above) were used.
In preparation for the assay, the cells were grown on glass coverslips until approximately 60% confluent. The cells were then transfected with a complex of spermidine cholesterol carbamate: DOPE (1 :1) and a plasmid(pCMV- CFTR) containing a cDNA that encodes wild type human CFTR. pCMV-CFTR plasmid is a construct containing the encoding sequence for CFTR and the following regulatory elements, a CMV promoter and enhancer, and an SV40 polyadenylation signal. Additional constructs suitable for the practice of this example include pMT-CFTR, Cheng et al.. Cell, 63, 827-834 (1990). The complex used was 10.5 μmolar of spermidine cholesterol carbamate (also of DOPE) and 30 μmolar of pCMV-CFTR based on nucleotide.
48 hours after amphiphile- ediated transfection, cells were tested for cAMP-stimulated Cl" channel activity using the 6-methoxy-N- (3sulfopropyl)quinolinium ("SPQ") assay. See S. Cheng et al., Cell. 66, 1027- 1036 (1991) for further information concerning assay methodology. In the assay, cAMP-dependent Cl" channel activity was assessed using "SPQ" (from Molecular Probes, Eugene, Oregon), a halide-sensitive fluorophore. Increases in halide permeability results in a more rapid increase in SPQ fluorescence, and the rate of change (rather than the absolute change in fluorescence) is the important variable in assessing Cl" permeability. See also Rich et al.. Nature, 347, 358-363 (1990) for background information.
Fluorescence of the SPQ molecule in individual cells was measured using an inverted microscope, Nikon, , a digital imaging system from Universal Imaging, and an ICCD camera, Hamamatsu, Inc.. Cells were selected for analysis without prior knowledge of their expected rate-of-change- in- fluorescence characteristics.
In each experiment, up to five microscope fields of between 90 and 100 cells were examined on a given day, and studies under each condition were repeated on at least 3 different days. Since expression of CFTR is heterogenous (i.e. cells do not produce identical amounts of CFTR), the data presented were for the 20% of cells in each field exhibiting the greatest response.
As expected, cells that were mock transfected failed to exhibit any measurable increase in cAMP-stimulated halide fluorescence. In contrast, cells that had been transfected with the wild type CFTR cDNA displayed a rapid increase in SPQ fluorescence upon stimulation with cAMP agonist, indicating increased permeability to anions. Approximately 60% of the cells assayed exhibited measurable cAMP-stimulated Cl" channel activity. Accordingly, spermidine cholesterol carbamate, and other cationic amphiphiles of the invention similarly tested, are effective in transferring CFTR-encoding plasmid into immortalized CF airway cells. Example 3 - CAT Assay
This assay was used to assess the ability of the cationic amphiphiles of the invention to transfect cells in vivo from live specimens. In the assay, the lungs of balb/c mice were instilled intra-nasally (the procedure can also be performed trans-tracheally) with 100 μl of cationic amphiphile: DNA complex, which was allowed to form during a 15-minute period prior to administration according to the following procedure. The amphiphile (premixed with co-lipid, see below) was hydrated in water for 10 minutes, a period sufficient to yield a suspension at twice the final concentration required. This was vortexed for two minutes and aliquoted to provide 55 microliter quantities for each mouse to be instilled. Similarly, DNA encoding the reporter (CAT) gene was diluted with water to a concentration twice the required final concentration, and then aliquoted at 55 microliters for each mouse to be instilled. The lipid was gently combined with the DNA (in a polystyrene tube), and the complex allowed to form for 15 minutes before the mice were instilled therewith.
The plasmid used (pCMVHI-CAT, see Example 4) provides an encoding DNA for chloramphenicol transfcrase enzyme. Specifics on the amphiphile:DNA complexes are provided below.
Two days following transfection, mice were sacrificed, and the lungs and trachea removed, weighed, and homogenized in a buffer solution (250 mM Tris, pH 7.8, 5mM EDTA). The homogenate was clarified by centrifugation, and the deacetylases therein were inactivated by heat treatment at 70 °C for 10 minutes. Lysate was incubated overnight with acelyl coenzyme A and C'4 — chloramphenicol. CAT enzyme activity was then visualized by thin layer chromatography ("TLC") following an ethyl acetate extraction. Enzyme activity was quantitated by comparison with a CAT standard curve.
The presence of the enzyme CAT will cause an acetyl group to be transferred from acetylcoenzyme A to C14 —chloramphenicol. The acetylated radiolabeled chloramphenicol migrates faster on a TLC plate and thus its presence can be detected. The amount of CAT that had been necessary to generate the determined amount of acetylated chloramphenicol can then be calculated from standards. The activity of spermidine cholesterol carbamate (amphiphile No.53) was determined in the CAT assay in relation to the recognized transfection reagents DMRIE and DC-Choi. Figure 10 demonstrates dramatically (as ng CAT activity per 100 mg tissue) the enhanced ability of spermidine cholesterol carbamate (amphiphile No. 53) to transfect cells in vivo, which enhancement is about 20-fold, or greater, in this assay. In the assay, activity was measured as ng CAT enzyme per 100 mg lung tissue. As a comparison, it is generally observed that DMRIE, a well known transfectant, when prepared as a 1 :1 molar mixture with DOPE and then complexed with plasmid DNA (1.7 mM DMRIE, 1.7 mM DOPE, 1.2 mM plasmid DNA measured as nucleotide) gives about 1 to 2 ng activity per 100 mg lung tissue in this assay.
With respect to the comparison provided by Figure 10, the following conditions are of note. The transfection solution for spermidine cholesterol carbamate contained 6mM DNA measured as concentration of nucleotide, and 1.5 mM of cationic amphiphile. Following generally the procedure of Example 1 , each amphiphile had also been premixed with DOPE, in this case at 1 : 1 molar ratio. For transfection with DC-chol, the molar ratio of DC-chol to DOPE was 3:2, and the concentrations of cationic amphiphile and of DNA (as nucleotide) were 1.3 mM and 0.9 mM, respectively. For transfection with DMRIE, the molar ratio of DMRIE to DOPE was 1 : 1 and the concentrations of cationic amphiphile and of DNA were 1.7 mM and 1.2 mM, respectively. These concentrations (and concentration ratios) for each amphiphile, and colipid and DNA, had been determined to be optimal for transfection for that respective amphiphile, and accordingly were used as the basis for the comparison presented herein.
For spermidine cholesterol carbamate (amphiphile No. 53), optimization experiments were also performed to determine preferred concentrations of plasmid for a particular amphiphile concentration (see Figure 1 1), and also to determine preferred concentrations of the same amphiphile in relation to a particular plasmid concentration (see Figure 12). Transfection efficiency was optimal at an amphiphile concentration of 1.5 mM (DOPE also being present at 1.5 mM), and about 6 mM (by nucleotide) of plasmid, or about at a ratio of 1 :4. It was noted, however, that concentrations of about 0.75 mM of amphiphile, and 3.0 mM of plasmid were less toxic to the target cells.
Intra-nasal transfection with pCMVHI-CAT vector was also performed in mice using spermidine cholesterol carbamate as cationic amphiphile but with cholesterol as co-lipid. In this experiment, the concentrations of spermidine cholesterol carbamate tested were between 1.0 and 1.5 mM (cholesterol being present at a 1 :1 molar ratio in each case, with the mixing of amphiphile and co-lipid being performed as above). The DNA concentration ( measured as nucleotide concentration) was between 4.0 and 6.0 mM. Transfection efficiency (again measured as ng CAT/100 mg tissue) was less effective than with DOPE as co-lipid; however, the transfections were substantially more effective than those achieved using DC-Chol/DOPE. part B
Additional experiments were performed to compare in vivo the transfection efficiency of cationic amphiphiles depicted in Figures 1, 5 and 7. Results therefor are reported in Figures 13, 14 and 15 respectively. The compounds were administered intra-nasally using between 12 and 15 mice per compound. As in part A above, ng CAT activity was measured per 100 mg of tissue. However, improved vectors (pCFl/CAT and its near equivalent pCF2/CAT) were used. In part resulting from improved vector performance, incubations of lysate with acctyl coenzyme A and C' -chloramphenicol were conducted for only 30 minutes. Construction of pCFl/CAT and pCF2/CAT is described below in Example 4.
The in vivo data reported in Figures 13, 14 and 15 were compiled generally as follows. As aforementioned, Figures 1 and 1 1 report data from the complete in vivo optimization of amphiphile No. 53. Amphiphile No. 67 was subjected to a similar partial optimization. With respect to all of the other cationic amphiphiles reported on, and taking advantage of numerous structural similarities, optimized compositions for in vivo testing were extrapolated from in vitro results. This facilitated the screening of large numbers of amphiphiles and produced broadly, if not precisely, comparable data. For all amphiphiles other than Nos. 53 and 67, the ratio, for in vivo testing, of amphiphile concentration to DOPE concentration was taken from the in vitro experiments, as was the optimized ratio of amphiphile concentration to DNA concentration (see Example 1 ). Accordingly, for such amphiphiles the in vivo test concentration was fixed at ImM, thereby fixing also the co-lipid concentration. [Broadly, the molar ratio of the amphiphile to co-lipid DOPE ranged from 1 :2 (for example, spermine cholesterol carbamate, No. 67) through 1 :1 (for example, spermidine cholesterol carbamate, No. 53) to about 2: 1 (for example, amphiphile No. 75)]. The concentration of plasmid DNA varied for each amphiphile species tested in order to duplicate the optimized amphiphile/DNA ratio that had been determined in vitro. part C
That the novel amphiphiles of the invention are an important contribution to the art is immediately seen by comparing their performance - as in vivo transfection enhancers - to that of closely related cationic amphiphiles that lack the novel T-shape. It has been determined that spermidine cholesterol carbamate provides a much greater level of enhancement than N -spermidine cholesteryl carbamate which contains the same number of carbon and nitrogen atoms in its cationic alkylamine component but which is linear and not "T-shaped". Following generally the procedures of Example 3, part B, and using respectively 6mM (as nucleotide), 1.5 mM, and 1.5 mM concentrations of DNA, amphiphile and of co-lipid, the transfection enhancement provided by spermidine cholesterol carbamate (amphiphile No.53) , in relation to N -spermidine cholesteryl carbamate, was determined to be about 30 fold.
Also following the procedures of Example 3, part B, and using respectively 4mM (as nucleotide), ImM, and 2 mM concentrations of DNA, amphiphile and co-lipid, the transfection enhancement provided by spermine cholesterol carbamate (amphiphile No. 67) — in relation to N*- thermospermine cholesteryl carbamate and N -spermine cholesteryl carbamate to which spermine cholesterol carbamate is similarly related — is at least about 30 fold. Example 4- Construction of vectors
As aforementioned, numerous types of biologically active molecules can be transported into cells in therapeutic compositions that comprise one or more of the cationic amphiphiles of the invention. In an important embodiment of the invention, the biologically active macromolecule is an encoding DNA. There follows a description of novel vectors (plasmids) that are preferred in order to facilitate expression of such encoding DNAs in target cells. part A — pCMVHI-CAT pCMVHI-CAT is representative of plasmid constructs useful in the practice of the invention. Although the plasmid is provided in a form carrying a reporter gene (see Example 3), transgenes having therapeutic utility may also be included therein.
The pCMVHI-CAT vector is based on the commercially available vector pCMVβ (Clontech). The pCMVβ construct has a pUC19 backbone (J. Vieira, et al., Gene , 19, 259-268, 1982) that includes a procaryotic origin of replication derived originally from pBR322. Basic features of the pCMVHI- CAT plasmid (as constructed to include a nucleotide sequence coding for CAT) are as follows. Proceeding clockwise — the human cytomegalovirus immediate early gene promoter and enhancer, a fused tripartite leader from
1 adenovirus and a hybrid intron, a linker sequence, the CAT cDNA, an additional linker sequence, the late SV40 polyadenylation signal, and the pUC origin of replication and backbone that includes the gene for ampicillin resistance.
The human cytomegalovirus immediate early gene promoter and enhancer spans the region from nucleotides 1-639. This corresponds to the region from -522 to +72 relative to the transcriptional start site (+1) and includes almost the entire enhancer region from -524 to -118 as originally defined by Boshart et al, Cell 41 :521 -530, 1985. The CAAT box is located at nucleotides 487-491 and the TATA box is at nucleotides 522-526 in pCMVHI-CAT. The CAT transcript is predicted to initiate at nucleotide 549, which is the transcriptional start site of the CMV promoter. The tripartite leader-hybrid intron is composed of a fused tri-partite leader from adenovirus containing a 5' splice donor signal, and a 3' splice acceptor signal derived from an IgG gene. The elements in the intron are as follows: the first leader, the second leader , part of the third leader, the splice donor sequence and intron region from the first leader, and the mouse immunoglobulin gene splice donor sequence. The length of the intron is 230 nucleotides. The CAT coding region comprises nucleotides 1257-1913. The SV40 poly A signal extends from nucleotide 2020 to 2249.
Accordingly, construction of the pCMVHI-CAT plasmid proceeded as follows. The vector pCMVβ (Clontech, Palo Alto, CA) was digested with Not I to excise the β-galactosidase gene. The vector fragment lacking the β- galactosidase gene was isolated and ligated to form pCMV.
The hybrid intron (Figure 17) was obtained from the plasmid pADβ (Clontech). The hybrid intron had been isolated from a 695 base pair Xhol- EcoRI fragment of p91023(B), see Wong et al., Science, 228, 810-815 (1985). The hybrid intron contains the fused tripartite leader from adenovirus, the
0-7 donor site from the first segment of the tripartite leader, and the acceptor site from an IgG gene, and has a length of 230 bp. pADβ was digested with Pml I and Not I, and the -500 base-pair (bp) fragment was isolated, and then ligated into the Not I site of pBluescriptll KS(-) (Stratagene, La Jolla, CA) to form pBluell-HI. pBluell-HI was digested with Xhol and NotI to excise the hybrid intron fragment. This fragment was ligated into the Xhol and NotI sites of pCMV, replacing the SV40 intron to form pCMVHI.
The CAT gene was obtained from the Chloramphenicol Acetyltransferasc GenBlock (Pharmacia, Piscataway, N.T). This 792 bp Hind III fragment was blunted with the Klenow fragment of DNA Polymerase I, then Not I linkers (New England Biolabs) were ligated to each end. After digestion with Not I to expose the Not I sticky ends, the fragment was subcloned into the Not 1 site of pCMV to form pCMV-CAT. pCMV-CAT was digested with Not I to excise the CAT fragment. The CAT fragment was ligated into pCMVHI to form pCMVHI-CAT which is depicted in Figure 16.
Figure imgf000080_0001
Although pCMVHI is suitable for therapeutic transfections, further performance enhancements (including increased expression of transgenes) are provided by the pCFI and pCF2 plasmids. A map of pCFl/CAT is shown in Figure 18, panel A, and a map of pCF2/CAT is shown in panel B.
Briefly, pCFI contains the enhancer/promoter region from the immediate early gene of cytomegalovirus (CMV) . A hybrid intron is located between the promoter and the transgene cDNA. The polyadenylation signal of the bovine growth hormone gene was selected for placement downstream from the transgene. The vector also contains a drug-resistance marker that encodes the aminoglycosidase 3'-phosphotransferase gene (derived from the transposon Tn903, A. Oka et al., Journal of Molecular Biology , 147, 217-226, 1981) thereby conferring resistance to kanamycin. Further details of pCF 1 structure are provided directly below, including description of placement therein of a cDNA sequence encoding for cystic fibrosis transmembrane conductance regulator (CFTR) protein.
The pCFI vector is based on the commercially available vector pCMVβ (Clontech). The pCMVβ construct has a pUC19 backbone (J. Vieira, et al., Gene , 19, 259-268, 1982) that includes a procaryotic origin of replication derived originally from pBR322.
Basic features of the pCFI -plasmid (as constructed to include a nucleotide sequence coding for CFTR) are as follows. Proceeding clockwise — the human cytomegalovirus immediate early gene promoter and enhancer, a fused tripartite leader from adenovirus and a hybrid intron, a linker sequence, the CFTR cDNA, an additional linker sequence, the bovine growth hormone polyadenylation signal, pUC origin of replication and backbone, and the kanamycin resistance gene. The pCFI -CFTR plasmid has been completely sequenced on both strands.
The human cytomegalovirus immediate early gene promoter and enhancer spans the region from nucleotides 1 -639. This corresponds to the region from -522 to +72 relative to the transcriptional start site (+1) and includes almost the entire enhancer region from -524 to -1 18 as originally defined by Boshart et al., Cell, 41 , 521-530 (1985). The CAAT box is located at nucleotides 486-490 and the TATA box is at nucleotides 521-525 in pCFl- CFTR. The CFTR transcript is predicted to initiate at nucleotide 548, which is the transcriptional start site of the CMV promoter.
The hybrid intron is composed of a fused tri-partite leader from adenovirus containing a 5' splice donor signal, and a 3' splice acceptor signal derived from an IgG gene. The elements in the intron are as follows: the first leader (nucleotides 705-745), the second leader (nucleotides 746-816), the third leader (partial, nucleotides 817-877), the splice donor sequence and intron region from the first leader (nucleotides 878-1042), and the mouse immunoglobulin gene splice donor sequence (nucleotides 1043-1 138). The donor site (G|GT) is at nucleotides 887-888, the acceptor site (AG[G) is at nucleotides 1 128-1129 , and the length of the intron is 230 nucleotides. The CFTR coding region comprises nucleotides 1183-5622.
Within the CFTR-encoding cDNA of pCFl-CFTR, there are two differences from the originally-published predicted cDNA sequence (J. Riordan et al., Science, 245, 1066-1073, 1989); (1) an A to C change at position 1990 of the CFTR cDNA which corrects an error in the original published sequence, and (2) a T to C change introduced at position 936. The change at position 936 was introduced by site-directed mutagenesis and is silent but greatly increases the stability of the cDNA when propagated in bacterial plasmids (R. J. Gregory et al. et al., Nature , 347, 382-386, 1990). The 3' untranslated region of the predicted CFTR transcript comprises 51 nucleotides of the 3' untranslated region of the CFTR cDNA, 21 nucleotides of linker sequence and 114 nucleotides of the BGH poly A signal.
The BGH poly A signal contains 90 nucleotides of flanking sequence 5' to the conserved AAUAAA and 129 nucleotides of flanking sequence 3' to the AAUAAA motif. The primary CFTR transcript is predicted to be cleaved downstream of the BGH polyadenylation signal at nucleotide 5808. There is a deletion in pCFl-CFTR at position +46 relative to the cleavage site, but the deletion is not predicted to effect either polyadenylation efficiency or cleavage site accuracy, based on the studies of E.C. Goodwin et al., J. Biol. Chem., 267, 16330-16334 (1992). After the addition of a poly A tail, the size of the resulting transcript is approximately 5.1 kb. pCF2 plasmid, Figure 18 (B), contains a second CMV enhancer, in tandem with the first. Enhanced expression of transgenes from pCFI or pCF2 results from the combination of a strong promoter, the presence of a highly efficient polyadenylation signal, a leader sequence that enhances translation, and an intron to increase message stability. Example 5 - Correction of Chloride Ion Transport Defect in Nasal Polyp Epithelial Cells of a Cystic Fibrosis Patient by Cationic Amphiphile-Mediated Gene Transfer
Primary (non-immortalized) nasal polyp cells from an adult male cystic fibrosis patient (homozygous for the Δ F508mutation) were grown on collagen- coated permeable filter supports (Millicells) to form a polarized and confluent epithelial monolayer. Once the monolayer was electrically tight (about 5 to 7 days post seeding, and as indicated by the development of resistance across the cell sheet), the apical surface can be exposed to formulations of cationic amphiphile: DNA complex.
In this case, the amphiphile (spermidine cholesterol carbamate ) was provided as a 1 : 1 (by mole) mixture with DOPE, and this mixture was then complexed with pCMV-CFTR plasmid vector (a construct encoding wild type human cystic fibrosis transmembrane conductance regulator protein, see above). Concentrations in the final mixture were 42 μmolar of spermidine cholesterol carbamate(and also of DOPE) and 60 μmolar (based on molarity in nucleotides) of the plasmid expression vector.
Expression of CFTR was determined by measuring cAMP-stimulated transepithelial chloride secretion in a modified Ussing chamber, Zabner et al.,
Nature Genetics ,6, 75-83 (1984). The mucosal side of the epithelium was bathed in Ringer's bicarbonate solution bubbled with 95% O2 and 5% CO2.
The composition of the submucosal solution was similar to the mucosal solution with the exception that sodium gluconate replaced sodium chloride. Transepithelial voltage was clamped to 0 mV and short circuit current was recorded. Amiloride (10 μM) was applied into the apical bath, followed by the mucosal addition of forskolin and IBMX (at 100 μM each). 5-nitro-2-(3- phenylpropylamino) benzoic acid ("NPPB") , an inhibitor of CFTR chloride channels, was then added to the mucosal solution at 10 to 30 μM.
SI Chloride secretion (i.e. movement of chloride from the epithelial cells to the mucosal solution) is shown as an upward deflection (see Figuie 19). The same plasmid vector, but containing a reporter gene, was used as a negative control. A cAMP-stimulated current (0.5 to 2.5 μampere/cm*-) was observed in monolayers transfected with wild type CFTR gene. Current was not detected with the pCMV -β-galactosidase control.
Example 6- Correction of Chloride Ion Transport Defect in Airway Epithelial Cells of a Cystic Fibrosis Patient by Cationic Amphiphile-Mediated Gene Transfer
A recommended procedure for formulating and using the pharmaceutical compositions of the invention to treat cystic fibrosis in human patients is as follows.
Following generally the procedures described in Example 1 , a thin film
(evaporated from chloroform) is produced wherein spermine cholesterol carbamate (amphiphile No. 67) and DOPE arc present in the molar ratio of 1 :
2. The amphiphile-containing film is rehydated in water-for -injection with gentle vortexing to a resultant amphiphile concentration of about 3mM.
However, in order to increase the amount of amphiphile/DNA complex that may be stably delivered by aerosol as a homogeneous phase (for example, using a Puritan Bennett Raindrop nebulizer from Lenexa Medical Division,
Lenexa, KS, or the PARI LC Jet™ nebulizer from PARI Respiratory
Equipment, Inc., Richmond, VA), it may be advantageous to prepare the amphiphile-containing film to include also one or more further ingredients that act to stablize the final amphiphile/DNA composition. Accordingly, it is presently preferred to prepare the amphiphile-containing film as a 1 : 2 : 0.05 molar mixture of amphiphile No. 67, DOPE, and PEG(5QOO)-DMPE. [A suitable source of PEG-DMPE, polyethylene glycol 5000 - dimyristoylphoshatidyl ethanolamine, is Catalog No. 880210 from Avanti
9e Polar Lipids, Alabaster, AL]. Additional fatty acid species of PEG-PE may be used in replacement therefor.
Without being limited as to theory,
Figure imgf000085_0001
is believed to stablize the therapeutric compositions by preventing further agrregation of formed amphiphile/DNA complexes. Additionally it is noted that PEG -2QOO)"
DMPE was found to be less effective in the practice of the invention. pCFl-CFTR plasmid (containing an encoding sequence for human cystic fibrosis transmembrane conductance regulator, see Example 4) is provided in water-for-injection at a concentration, measured as nucleotide, of 4 mM. Complexing of the plasmid and amphiphile is then allowed to proceed by gentle contacting of the two solutions for a period of 10 minutes.
It is presently preferred to deliver aerosolized DNA to the lung at a concentration thereof of between about 2 and about 12 mM (as nucleotide). A sample of about 10 to about 40 ml is generally sufficient for one aerosol administration to the lung of an adult patient who is homozygous for the Δ F508 mutation in the CFTR-encoding gene.
It is expected that this procedure (using a freshly prepared sample of amphiphile/DNA) will need to be repeated at time intervals of about two weeks, but depending considerably upon the response of the patient, duration of expression from the transfected DNA, and the appearance of any potential adverse effects such as inflammation, all of which can be determined for each individual patient and taken into account by the patient's physicians.
One important advantage of the cationic amphiphiles of the present invention is that they are substantially more effective — in vivo — than other presently available amphiphiles, and thus may be used at substantially lower concentrations than known cationic amphiphiles. There results the opportunity to substantially minimize side effects (such as amphiphile toxicity, inflammatory response) that would otherwise affect adversely the success of the gene therapy. A further particular advantage associated with
$3 use of many of the amphiphiles of the invention should again be mentioned. Many of the amphiphiles of the invention were designed so that the metabolism thereof would rapidly proceed toward relatively harmless biologically-compatible components. In this regard, highly active amphiphiles 53, 67, and 75 are of particular note.
Example 7- Further Enhancements in Plasmid Design for Gene Therapy : Replicating Episomal Plasmids
Although the above design features substantially enhance the performance of available plasmids, further modifications are desirable in order that therapeutic compositions comprising such plasmids and cationic amphiphiles have optimal performance for gene therapy.
It is desirable that plasmids for gene therapy also be able to replicate in the cells of patients, since continued presence of the plasmid will provide correction of the genetic defect (in the case of cystic fibrosis, lack of functioning CFTR protein in the cell membrane of lung epithelial cells or other cells) over an extended period of time. There is concern that plasmids representative of the current art (that is, those that cannot replicate in the targeted cells of a patient) may be degraded after only a relatively short period of maintenance in the patient, thus requiring excessive repeat administrations.
Long term correction could perhaps be achieved using a vector designed to integrate into chromosomes in the patient's targeted cells (for example, vectors patterned on retrovirus). Such a strategy, however, involves risks including (1) that the vector will integrate into an essential region of a chromosome, or (2) that the vector will integrate adjacent to an oncogene and activate it.
Accordingly, it would be desirable to provide for continued maintenance of gene therapy vectors (plasmids) in target cells by other means. One such strategy is to construct a plasmid capable of being maintained
Ϊsf separately in the nucleus of a target cell, and that is also able to replicate there (i.e. an episome).
Plasmids provided according to this aspect of the invention can be constructed as follows. It has been determined (C. McWhinney et al., Nucleic Acids Research, 18, 1233-1242, 1990) that the 2.4 kb Hindlll-Xhol fragment that is present immediately 5' to exon 1 of the human c-myc gene contains an origin of replication. The fragment was then cloned into a plasmid that if transfected into HeLa cells was shown to persist therein for more than 300 generations under drug selection. Replication was shown to be semiconservative (C. McWhinney et al.). Although approximately 5% of the plasmid population was lost per cell generation without drug selection in those experiments, this result nonetheless demonstrates substantial stabilization would be of benefit with respect to the design of therapeutic plasmids for gene therapy.
Accordingly, in one example of a replicating episomal vector, a variant of pCFl-CFTR (or pCFl-CAT) can be constructed in which a copy of the 2.4 kb Hindlll-Xhol fragment is placed just 5' to the CMV enhancer/promoter region of the pCFI backbone. Alternatively, between 2 and about 4 - in tandem - copies of the 2.4 kb fragment may be similarly positioned. The increase in plasmid size that results from insertion of the 2.4 kb fragment (or multiple copies thereof) is predicted to provide an additional benefit, that is, to facilitate plasmid unwinding, thus facilitating the activity of DNA polymerase.
Use of this origin of replication, or multiple copies thereof, allows the resultant plasmid to replicate efficiently in human cells. Other DNA sequences containing other origins of replication may also be used (for example, as found in the human β-globin gene, or the mouse DHFR gene.
A plasmid that can be constructed according to this aspect of the invention and containing the cytomegalovirus promoter and enhancer, an intron, the CFTR cDNA, the bovine growth hormone polyadenylation signal, the kanamycin resistance transposon Tn903, and 4 copies of the 2.4 kb 5' flanking region of the human c-myc gene is shown in Figure 20. Example 8-Further Enhancements in Plasmid Design for Gene Therapy : Use of Cytokine Promoters to Modulate Expression of Transgenes in Gene Therapy
Chronic inflammation is associated with numerous of the disease states that can be treated by gene therapy. Representative of such disease states are cystic fibrosis (using CFTR), bronchitis, adult respiratory distress syndrome (using alpha- 1 antitrypsin), and metastatic cancers (through upregulation of p53, TIMP-1 , and TIMP-2). Inflammatory conditions typically involve many interrelated processes (for example, involvement by many types of immune system cells and liver proteins), whereby the body attempts to heal a damaged or infected tissue. However, chronic inflammation which persists as a result of an unresolved condition may lead to permanent tissue damage, as is the case with respect to lung tissue affected by cystic fibrosis and associated and unresolved lung infections. In fact, permanent damage to the lung tissue of cystic fibrosis patients is a leading cause of their mortality. It would be desirable to provide gene therapy in such a manner as to treat inflammatory conditions associated with the targeted disease state.
Accordingly, a further aspect of the present invention involves construction of gene therapy vectors in which the therapeutic transgene is placed under control of an RNA polymerase promoter from a cytokine gene (or a gene that encodes another similar regulatory protein) such as, for example, the promoter for any of interleukin 2, interleukin 8, interleukin 1, interleukin 11, interleukin 6, endothelin -1, monocyte chemoattractant protein -1 , IL-lra (receptor agonist), or for GM-CSF.
Cytokines may be defined as hormone-like intercellular signal proteins that are involved in regulation of cell proliferation, differentiation, and function, such as concerning haematopoiesis and lymphopoiesis. The interleukins are a particular group of cytokines having promoters that are useful in the practice of the invention. The interleukins are proteins, typically of unrelated origin, which act as intercellular signals mediating reactions between immunoreactive cells. However, it is understood that many "interleukins" have effects upon additional cell types including endothelial cells, epithelial cells, and fibroblasts.
Since the concentration of many cytokines is upregulated at an affected site in response to the level of inflammation that is present, gene therapy vectors can be designed wherein the level of therapeutic transgene expressed therefrom is determined, in part, by the level of inflammation present. There follows hereafter description of how such vectors are designed using primarily properties of the interleukin 8 gene as an example.
It has been determined that numerous biologically active molecules are present in tissues at concentrations thereof that increase with the severity of an inflammatory condition (for example, tumor necrosis factor "TNF" and potentially transcription factors such as NF-kB, AP-1, NF-IL6 and octamer binding protein).
It has also been determined that interleukin 8, a polypeptide of 8,500 MW, is upregulated by inflammation and acts as a potent chemoattractant for T lymphocytes and neutrophil cells that are themselves involved in the inflammation response. The interleukin 8 gene is regulated primarily at the transcriptional level, and it has also been determined (H. Nakamura et al., Journal of Biological Chemistry , 266, 19611-19617, 1991 ) that TNF can increase interleukin 8 transcription by more than 30 -fold in vitro in bronchial epithelial cells. Accordingly, there follows description of gene therapy vectors which take advantage of the above.
A plasmid can be constructed that is substantially similar to pCFI, that is, derived from a pUC plasmid containing a bacterial-derived origin of replication and a gene conferring resistance to kanamycin. The resultant plasmid contains also, in sequence, a CMV enhancer, a promoter, a hybrid intron, a cDNA sequence encoding CFTR, and the bovine growth hormone polyadenylation signal. As RNA polymerase promoter there is selected the - 335 to +54 region of the interleukin 8 promoter. This region gave the highest ratio in terms of promoter activity plus TNF over minus TNF (Nakamura, 1991)
Such a plasmid has particularly valuable performance attributes. As inflammation increases in a cystic fibrosis-affected lung (and therefore the need to treat the lung with gene therapy also increases), the concentration of various inflammation-related molecules ( such as TNF) will increase. By placing the CFTR-encoding cDNA of the therapeutic plasmid under the control of a transcriptional promoter (that of interleukin 8, for example) that is itself sensitive to the concentration of inflammation-related substances in contact with the cell, the promoter will function as a natural gene switch such that the amount of beneficial CFTR transcription will be tailored to the amount of inflammation. As aforementioned, RNA polymerase promoter sequences derived from the other aforementioned genes are also useful in the practice of the invention. Example 9 Intravenous Delivery of Transgenes
For some disease states, such as cystic fibrosis, it is desirable to deliver transgenes to the lung. Delivery by aerosol is the most direct approach to achieve this goal. However, given the difficulties inherent with the delivery of an aerosol together with the potential need to target organs other than the lung (for example, the pancreas for cystic fibrosis), it is important to evaluate the feasibility of lung delivery using non-aerosol delivery formats. Accordingly, intravenous delivery of a reporter transgene was performed using a mouse model and the feasibility of intravenous organ targeting was assessed. A comparison was made of feasibility of delivery to the lung and the heart. The reporter plasmid pCF-1 CAT (Example 4) was used and was purified to minimize endotoxin (<1 EU/mg pDNA), and also chromosomal DNA contamination (< 2%). Amphiphile No. 53 (1 : 1 with DOPE) / DNA complex was prepared according to the procedures of Example 3. The amphiphile was provided as the free base, the plasmid was prepared as a sodium salt in water, and the DOPE was provided in zwitterionic form.
The animal model was the BALB/c mouse. Females 6-8 weeks old weighing 16-18 g were injected intravenously using the tail vein, using 5 animals per group. The volume of lipid:pDNA complex used was 100 μl in all experiments. Unless noted otherwise, mice were sacrificed 48 h following adminstration of the complex. Organs were frozen immediately on dry ice to store for subsequent analysis.
Expression of chloramphenicol acetyl transferase (CAT) was quantitated using a radiochemical assay for CAT enzymatic activity. Organs were weighed and homogenized on ice in a lysis buffer containing protease inhibitors. The lysate was freeze-thawed 3X, centrifuged, and heated to 65°C to inactivate deacetylases before adding it to a reaction mixture containing ^C- chloramphenicol. After an incubation at 37°C, the mixture was extracted with ethyl acetate, concentrated, spotted onto TLC plates and eluted with CHCl3/MeOH. Spots corresponding to the acylated reaction products were quantitated (Betagen) and converted to ng CAT activity using authentic CAT standards.
It was surprisingly determined that targeting to the heart could be substantially improved by altering the molar ratio (at a constant DNA concentration of 0.9 mM, measured as nucleotide) of amphiphile/DNA in the therapeutic composition. This information is of value in connection with gene therapy for the heart, such as for coronary disease. However, targeting to the lung remained relatively constant over a range of amphiphile/DNA ratios, all at constant DNA concentration (Figure 21).
?1 At molar ratios of less than about 0.5, the organ distribution was found to be strongly weighted toward the lung. At this molar ratio, the zeta potential of the complex is negative (about -30 mV) due, in part, to excess negative charge from the DNA relative to the amphiphile. At an amphiphile/DNA ratio of 1.25, however, where the complex has a positive zeta potential (about +30mV), organ distribution was remarkably altered and substantial expression was found in the heart (Figure 21).
Zeta potentials of the samples can be measured (using typically 5 measurements per sample) employing a Malvern Zetasizer 4 (Malvern
Instruments, Southborough, MA.) and a zeta cell (AZ-104 cell, Malvern
Instruments Co.). Dried lipid films containing the cationic lipid and DOPE are hydrated in distilled water (dI I2O). DNA typically should be diluted to a concentration of about 300 μM in dH2O. The DNA solution (1.5 mL) can then be added to an equal volume of cationic lipid vesicles and incubated at room temperature for 10 min. Enough NaCl (for example, 4 mM stock) may be added to result in a final concentration of 1 mM NaCl. If necessary, the sample can be diluted further with 1 mM NaCl (to maintain a photomultiplier signal below 4000 counts per second), and distilled water can be used in place of the NaCl solutions.
According to this aspect of the invention, amphiphiles No. 53 and No. 67 are among those preferred for use in intravenous targeting of the heart, as are many other amphiphiles selected from Groups I and II. Example 10- Additional Experimental Procedures (A) Additional synthesis procedure for N -spermine cholesteryl carbamate, amphiphile No. 67
(Synthesis of N^,N^2 -diCbz-spermine di-HCl salt)
Benzylchloroformate (15 mL, 105 mmol) was dissolved in methylene chloride (335 mL) and placed in a three neck flask under a nitrogen atmosphere. Imidazole (14 g, 206 mmol) was dissolved in methylene chloride
HO (200 mL). The three neck flask was cooled to 0-2 °C using an ice-water bath and the imidazole solution was added gradually over 30 min. The cooling bath was removed and the mixture stirred at room temperature for 1 hour. Methylene chloride ( 250 mL) and aqueous citric acid (10%, 250 mL) were added to the mixture. The layers were separated and the organic layer was washed with aqueous citric acid (10%, 250 mL). The organic fraction was dried over magnesium sulfate and concentrated in vacuo. The resulting oil was vacuum dried for 2 hours at ambient temperature. To the oil was added dimethylaminopyridine (530 mg, 4.3 mmol) and methylene chloride (250 mL). The mixture was cooled to 0-2 °C and kept under a nitrogen atmosphere. A solution of spermine (lOg, 49 mmol) in methylene chloride (250 mL) was added gradually over 15 minutes, maintaining a reaction temperature of 0-2 °C. The reaction mixture was stirred overnight at ambient temperature and then concentrated in vacuo. To the resulting material was added IM hydrochloric acid (67 mL) and methanol (400 mL). The solution was cooled overnight at 4 °C yielding a white precipitate. The precipitate was isolated by vacuum filtration using Whatman #1 filter paper. The N ' ,N - -diCbz-spermine di HC1 salt (13.38g, 24.7 mmol, 50% yield) thus obtained was dried under vacuum at ambient temperature for 17 hours. (Synthesis of N\N '2-diCbz-N -spermine cholesteryl carbamate)
N^N^-diCbz-spermine di HC1 salt (13.38g, 24.7 mmol) was dissolved in a chloroform, methanol and water mixture in the ratio 65:25:4 (940 mL). The solution was stirred at room temperature and cholesteryl chloroformate (1 lg, 24.5 mmol) was added. The solution was stirred at ambient temperature for 1.5 hours and then diluted with IM sodium hydroxide solution (165 mL). The organic and aqueous layers were separated and the organic layer containing the product was washed with water (1 10 mL). The organic fraction was dried over sodium sulfate, concentrated in vacuo and vacuum dried. The crude oil was purified by chromatography using silica gel cιι (60A, 1 Kg) . The silica was packed in 10% MeOH / CI1C13 and the column was eluted with 25% MeOH / CHC13. Fractions of 900 mL were collected and analyzed by thin layer chromatography. Fractions containing the product (Rf. = 0.5 in 20% MeOH / CHC1 ) were combined and concentrated in vacuo. The resulting oil was dried under vacuum for 17 hours to give 8.5g (9.67 mmol, 39% yield) of product.
9P- (Synthesis of N -spermine cholesteryl carbamate)
N^,N^2-diCbz-N4-spermine cholesteryl carbamate (8.5g, 9.67 mmol) was dissolved in 200 mL of acetic acid and 1.66 g of 10% Pd on carbon was added. The solution was purged with nitrogen and stirred under hydrogen at atmospheric pressure. The hydrogen was supplied to the reaction flask using a balloon filled with hydrogen gas. The hydrogenolysis was allowed to proceed for 3 hours. The reaction mixture was filtered through Whatman #1 filter paper and the catalyst was washed with 250 mL of 10% acetic acid in ethyl acetate. The filtrate was concentrated in vacuo to give a residue, coevaporation with chloroform aids removal of the acetic acid. To the crude product was added IM sodium hydroxide solution (400 mL) and the solution was extracted three times with 10% MeOH / CHC13 (700 mL). The combined organic fractions were washed with water (600 mL) and dried over sodium sulfate. The solution was filtered, concentrated in vacuo and vacuum dried at ambient temperature for 48 hours. The crude material was purified by chromatography on silica gel (500 g). The column was packed in 40:25 MeOH : CHC13 and eluted with 40:25 MeOH : CHC13 and then 40:25:10 MeOH :
CHC1 : NH4OH. The fractions collected were analyzed by thin layer chromatography and the product containing fractions were combined and concentrated in vacuo (the evaporation was assisted by the addition of iso- propanol in order to azeotrope the residual water). The material was vacuum dried at ambient temperature for 48 hours to give N -spermine cholesteryl carbamate (4g, 6.5 mmol, 67% yield). (B) N4-(N'-cholesteryl carbamate glycineamide)-spermine (amphiphile No.
211
N-t-BOC-glycine-N-hydroxysuccinimide ester (0.5 g, 1.83 mmol) was added to a solution of diCbz-spermine'2HCl (1.0 g, 1.94 mmol) and N,N- diisopropylethylamine (0.3 mL, 1.72 mmol) in 65/ 25/ 4 chloroform/ methanol/ water (50 mL). The solution was stirred overnight at room temperature 3 Analysis of the reaction by TLC (20% methanol/ chloroform) indicated the presence of a new spot. The reaction was washed first with IM NaOH (10 mL) then with H O (10 mL). The organic layer was separated, dried over sodium sulfate, vacuum filtered, and reduced in vacuo to an oil. The crude material was purified by flash column chromatography (85 g silica gel) eluting with 20% methanol/ chloroform. The desired product was isolated and characterized by !H NMR as N^N12-diCbz-N4-(N'-t-BOC-glycineamide)- spermine (402 mg, 0.65 mmol, 35%).
Benzyl chloroformate (100 mg, 0.58 mmol) was added to a solution of
N1 ,N12-diCbz-N4-(N'-t-BOC-glycineamide)-spermine (220 mg, 0.354 mmol) and triethylamine (4 drops) in methylene chloride (20 mL). The reaction was stirred overnight at room temperature. Analysis of the reaction by TLC (20% methanol/ chloroform) indicated the presence of a new, higher running spot.
The reaction was quenched by the addition of IM HCl (5 mL). The organic layer was isolated, washed with H2O (5 mL), dried over sodium sulfate, filtered, and reduced in vacuo .
The resulting crude material was dissolved in chloroform (30 mL) and anhydrous HCl gas was bubbled through the solution for 2 hours. Analysis of the reaction by TLC (10% methanol/ chloroform) indicated the complete disappearance of the starting material. The reaction was purged with dry nitrogen, and washed with IM NaOH (2 x 10 mL) and dH2O (10 mL). The organic layer was isolated, dried over sodium sulfate, filtered, and reduced in vacuo to give N' ,N ,N -triCbz-N4-glycineamide-spermine (219 mg, 0.33 mmol, 93% yield for two steps).
Cholesteryl chloroformate (148 mg, 0.33 mmol) was added to a solution of N N9,N^2-triCbz-N4-glycineamide-spermine (219 mg, 0.33 mmol) and triethylamine (0.3 mL, 2.15 mmol) in methylene chloride (30 mL).
The reaction was stirred at room temperature for 3 hours. The reaction was washed with H2O (10 mL). The organic layer was separated, dried over sodium sulfate, filtered, and reduced in vacuo . The crude material was purified by flash column chromatography (30 g silica gel) eluting with 65% ethyl acetate/ hexanes. The desired product was isolated and characterized by
*H NMR as N' ,N^,N^2-triCbz-N4-(N'-cholesteryl carbamate glycineamide)- spermine (221 mg, 0.2 mmol, 62% yield).
N ,N^,N^2-tri-Cbz-N4-(N'-cholesteryl carbamate glycineamide)- spermine (221 mg, 0.2 mmol) was stirred with 10% Pd/C (50 mg) in glacial acetic acid (10 mL) under a hydrogen atmosphere for 2.5 hours. Analysis of the reaction by TLC (65% ethyl acetate/ hexanes) indicated the complete disappearance of the starting material. The flask was purged with nitrogen and the catalyst was removed by vacuum filtration through filter paper rinsing with 10% acetic acid/ ethyl acetate (20 mL). The filtrate was reduced in vacuo to an oil which was dissolved in 10% methanol/ chloroform (100 mL) and washed with IM NaOH (20 mL) and H2O (15 mL). The organic layer was separated, dried over sodium sulfate, filtered, and reduced in vacuo. The isolated product was characterized by ' H NMR as N4-(N'-cholesteryl carbamate glycineamide)-spermine (128 mg, 0.19 mmol, 95% yield). (C) Synthesis of N4-spermidine-2,3-dilauryloxypropylamine, amphiphile No. 94.
2,3 Dimyristoylglycerol (600 mg, 1.4 mmol) was dissolved in pyridine and the solution cooled to 0°C. The solution was stirred under a nitrogen atmosphere and p-toluenesulfonyl chloride (300 mg, 1.57 mmol) was added. The solution was allowed to warm to room temperature and was then stirred overnight at ambient temperature. To the solution was added hydrochloric acid (2.5M, 20 mL) and the solution was extracted three times with methylene chloride (25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to give a crude oil. The oil was purified by flash chromatography (50g of silica gel, 60A) eluting with 5% ethyl acetate / hexane. The oil obtained by flash chromatography was dried under high vacuum at ambient temperature to give 2,3-Dimyristoylglycerol- tosylate(630 mg, 77% yield).
2,3-Dimyristoylglycerol-tosylate (300 mg, 0.51 mmol) and N' ,N8- diCbz-spermidine (1.5g, 3.6 mmol) were dissolved in toluene (15 mL). The solution was stirred under a nitrogen atmosphere and heated at reflux (110°C). The reaction was heated for 5 days at reflux temperature. The reaction was cooled to room temperature and then filtered through Whatman #1 filter paper. The filtrate was concentrated in vacuo . The residue was dissolved in chloroform (50 mL) and washed with sodium hydroxide solution (1 M, 10 mL) and water (10 mL). The organic fraction was dried over sodium sulfate, filtered and concentrated in vacuo . The crude material was purified by flash chromatography (30g silica gel, 60A) eluting with 5% methanol / chloroform. The product containing fractions were concentrated in vacuo. The material was purified by a second flash chromatography column (20 g silica, 6θA) eluting with 50% ethyl acetate / hexane. Chromatography gave, after drying the product under high vacuum at ambient temperature, N4-(N ] ,N -diCbz- spermidine-2,3-dilauryloxypropylamine, as an oil (142 mg, 35% yield).
N - N *,N8 -diCbz-spermidine-2,3-dilauryloxypropylamine (142 mg, 0.18 mmol) in glacial acetic acid (5 L) was stirred with 10% Pd C (50 mg) under a hydrogen atmosphere, for 2 hours. The catalyst was removed by vacuum filtration through Whatman #1 filter paper. The catalyst was washed with ethyl / acetate hexane (10%, 10 mL). The filtrate was concentrated in vacuo and dried for 2 hours under high vacuum. To the residue was added sodium hydroxide solution (1 M, 8 mL) and the solution was extracted three times with methanol / chloroform (10%, 20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to give after drying under high vacuum N -spermidine-2,3- dilauryloxypropylamine (52 mg, 52% yield). (D) Synthesis of N4-spermine-2.3-dilauryloxypropylamine, amphiphile No. 102
N-^N12-diCbz-spermine (0.87g, 1.85 mmol) and 2,3- dimyristoylglycerol-tosylate (280mg, 0.48 mmol) were dissolved in toluene (25 mL) and heated at reflux temperature (110°C) for 3 days. The solution was concentrated in vacuo and the resulting material was purified by flash chromatography (30g silica gel, 6θA) eluting with 10% methanol /chloroform. The material isolated was dissolved in methanol / chloroform (10%, 85 mL) and washed twice with sodium hydroxide solution (1 M, 15 mL) and water (10 mL). The organic fraction was dried over sodium sulfate, filtered and concentrated in vacuo . The material was dried under high vacuum overnight, at ambient temperature, to yield N4-(N ' ,N -diCbz-spermine)-2,3- dilauryloxypropylamine (180 mg, 43 % yield).
N4-(N ,N*2-diCbz-spermine)-2,3-dilauryloxypropylmine (180 mg, 0.2 mmol) in glacial acetic acid (10 mL) was stirred with 10% Pd/C (50 mg) under a hydrogen atmosphere, for 3 hours. The catalyst was removed by vacuum filtration through Whatman #1 filter paper. The catalyst was washed with ethyl / acetate hexane (10%, 30 mL). The filtrate was concentrated in vacuo and dried for 2 hours under high vacuum. To the residue was added methanol / chloroform (10%, 85 mL) and the organic layer was washed twice with sodium hydroxide solution (1 M, 15 mL) and water (10 mL). The organic fraction was dried over sodium sulfate, filtered and concentrated in vacuo to give after drying under high vacuum N4-spermine-2,3-dilauryloxypropylamine (50 mg, 40% yield).
Example 1 1 - CAT Assay of N '- Spermine Cholestryl Carbamate (No. 37) N*1 - spermine cholesteryl carbamate (see above, amphiphile No. 37) was evaluated in the in vivo CAT assay following generally the procedure of Example 3. Preparation of stock solutions of the N1 - spermine cholesteryl carbamate, and the neutral co-lipid DOPE (dioleoyl [18:1] phosphatidyl- ethanolamine) was as described in Example 1 , except that for certain preparations (see below) the amphiphile was provided(from chloroform) as a fully protonated hydrochloride salt.
For transfections, the amphiphile was tested at a 1 :1 or 1 :2 molar ratio to DOPE, at the final concentrations of 3.6 mM reporter plasmid DNA (as nucleotide), 0.6 mM cationic amphiphile, and either 0.6 or 1.2 mM of DOPE.
As demonstrated in Figure 22, providing the amphiphile in free base form dramatically increased reporter gene expression compared to the fully protonated hydrochloride salt.
The above descriptions of preferred embodiments of the invention have been presented to illustrate the invention to those skilled in the art. They are not intended to limit the invention to the precise forms disclosed.
π

Claims

What is claimed is:
1. A composition comprising a mixture of:
(a) a cationic amphiphile capable of accepting additional protons; and
(b) a biolgically active nucleic acid molecule.
2. The composition of Claim 1 further comprising a co-lipid.
3. The composition of Claim 2 wherein a proton source other than the colipid is absent.
4. The composition of Claim 1 wherein said cationic amphiphile is less than about 50% protonated.
5. The composition of Claim 1 wherein said cationic amphiphile is T- shaped.
6. The composition of Claim 1 wherein said cationic amphiphile is steroid based.
7. A composition comprising a mixture of:
(a) a cationic amphiphile capable of accepting additional protons, and
(b) a co-lipid.
8. A method of transfecting a cell comprising: contacting said cell with a biologically active nucleic acid molecule in the presence of a cationic lipid, wherein said cationic lipid is capable of accepting additional protons.
9. The method of Claim 8 wherein said contacting is further in the presence of a co-lipid.
10. A composition produced by the method of combining:
(a) a cationic amphilphile capable of accepting additional protons,
(b) a biologically active nucleic acid molecule.
11. A composition of Claim 11 further comprising a co-lipid. 1
PCT/US1997/009748 1996-06-10 1997-06-10 Cationic amphiphile compositions for intracellular delivery of therapeutic molecules WO1998013026A1 (en)

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WO1999052858A2 (en) * 1998-04-08 1999-10-21 Celltech Therapeutics Limited Lipids
US6583301B1 (en) 1998-04-08 2003-06-24 Celltech R & D Limited Lipids
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US7709457B2 (en) 1999-09-01 2010-05-04 Genecure Pte Ltd. Methods and compositions for delivery of pharmaceutical agents
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JP2003515568A (en) * 1999-12-04 2003-05-07 リサーチ ディベロップメント ファンデーション Carbon dioxide enhancement in inhalation therapy
WO2002096928A2 (en) * 2001-05-29 2002-12-05 Genethon Peptide vector for transferring molecules of interest to eurocaryotic cells
WO2002096928A3 (en) * 2001-05-29 2004-02-26 Genethon Peptide vector for transferring molecules of interest to eurocaryotic cells
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